Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-06-11 14:43 -0400 (Tue, 11 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4757 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4491 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4522 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4468 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 962/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HiCBricks 1.22.0 (landing page) Koustav Pal
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the HiCBricks package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCBricks.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HiCBricks |
Version: 1.22.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HiCBricks_1.22.0.tar.gz |
StartedAt: 2024-06-10 18:25:51 -0400 (Mon, 10 Jun 2024) |
EndedAt: 2024-06-10 18:30:33 -0400 (Mon, 10 Jun 2024) |
EllapsedTime: 281.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HiCBricks.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HiCBricks_1.22.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/HiCBricks.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.5 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘HiCBricks/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HiCBricks’ version ‘1.22.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HiCBricks’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
HiCBricks.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HiCBricks ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘HiCBricks’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HiCBricks)
HiCBricks.Rcheck/HiCBricks-Ex.timings
name | user | system | elapsed | |
BrickContainer_change_experiment_name | 1.220 | 0.176 | 2.086 | |
BrickContainer_change_output_directory | 1.015 | 0.137 | 1.786 | |
BrickContainer_get_path_to_file | 0.752 | 0.109 | 1.361 | |
BrickContainer_list_chromosomes | 0.820 | 0.131 | 1.458 | |
BrickContainer_list_experiment_name | 0.855 | 0.137 | 1.485 | |
BrickContainer_list_files | 0.873 | 0.138 | 1.533 | |
BrickContainer_list_output_directory | 0.837 | 0.124 | 1.479 | |
BrickContainer_list_resolutions | 0.861 | 0.131 | 1.543 | |
BrickContainer_unlink_resolution | 1.803 | 0.287 | 3.171 | |
Brick_add_ranges | 2.147 | 0.194 | 3.519 | |
Brick_call_compartments | 1.446 | 0.216 | 2.530 | |
Brick_export_to_sparse | 2.753 | 0.334 | 4.735 | |
Brick_fetch_range_index | 1.024 | 0.141 | 1.838 | |
Brick_fetch_row_vector | 1.621 | 0.287 | 2.952 | |
Brick_get_bintable | 0.864 | 0.131 | 1.429 | |
Brick_get_chrominfo | 0.873 | 0.141 | 1.580 | |
Brick_get_entire_matrix | 1.840 | 0.255 | 3.227 | |
Brick_get_matrix | 1.227 | 0.201 | 2.214 | |
Brick_get_matrix_mcols | 1.209 | 0.208 | 2.123 | |
Brick_get_matrix_within_coords | 1.724 | 0.224 | 2.985 | |
Brick_get_ranges | 0.903 | 0.128 | 1.646 | |
Brick_get_values_by_distance | 1.392 | 0.254 | 2.510 | |
Brick_get_vector_values | 1.247 | 0.209 | 2.108 | |
Brick_list_matrices | 0.834 | 0.133 | 1.508 | |
Brick_list_matrix_mcols | 0.858 | 0.134 | 1.559 | |
Brick_list_mcool_normalisations | 0.000 | 0.001 | 0.001 | |
Brick_list_mcool_resolutions | 0 | 0 | 0 | |
Brick_list_rangekeys | 0.859 | 0.131 | 1.462 | |
Brick_list_ranges_mcols | 0.868 | 0.135 | 1.593 | |
Brick_load_cis_matrix_till_distance | 1.128 | 0.207 | 2.010 | |
Brick_load_data_from_mcool | 0.000 | 0.001 | 0.003 | |
Brick_load_data_from_sparse | 0.000 | 0.001 | 0.000 | |
Brick_load_matrix | 1.235 | 0.245 | 2.274 | |
Brick_local_score_differentiator | 1.875 | 0.248 | 3.162 | |
Brick_make_ranges | 0.009 | 0.000 | 0.019 | |
Brick_matrix_dimensions | 1.204 | 0.209 | 2.559 | |
Brick_matrix_exists | 1.218 | 0.195 | 2.144 | |
Brick_matrix_filename | 1.263 | 0.192 | 2.182 | |
Brick_matrix_isdone | 1.103 | 0.182 | 1.968 | |
Brick_matrix_issparse | 1.093 | 0.176 | 1.927 | |
Brick_matrix_maxdist | 1.163 | 0.186 | 2.254 | |
Brick_matrix_minmax | 1.201 | 0.186 | 2.103 | |
Brick_mcool_normalisation_exists | 0 | 0 | 0 | |
Brick_rangekey_exists | 0.852 | 0.135 | 1.525 | |
Brick_return_region_position | 0.971 | 0.139 | 1.719 | |
Brick_vizart_plot_heatmap | 2.357 | 0.272 | 4.096 | |
Create_many_Bricks | 0.877 | 0.124 | 1.522 | |
Create_many_Bricks_from_mcool | 0.001 | 0.000 | 0.000 | |
load_BrickContainer | 0.901 | 0.127 | 1.567 | |