Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-05-30 11:35:04 -0400 (Thu, 30 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4753 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4518 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 962/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HiCBricks 1.22.0 (landing page) Koustav Pal
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the HiCBricks package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCBricks.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HiCBricks |
Version: 1.22.0 |
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings HiCBricks_1.22.0.tar.gz |
StartedAt: 2024-05-29 23:17:07 -0400 (Wed, 29 May 2024) |
EndedAt: 2024-05-29 23:20:23 -0400 (Wed, 29 May 2024) |
EllapsedTime: 196.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HiCBricks.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings HiCBricks_1.22.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/HiCBricks.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘HiCBricks/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HiCBricks’ version ‘1.22.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HiCBricks’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
HiCBricks.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL HiCBricks ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘HiCBricks’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HiCBricks)
HiCBricks.Rcheck/HiCBricks-Ex.timings
name | user | system | elapsed | |
BrickContainer_change_experiment_name | 1.162 | 0.038 | 1.216 | |
BrickContainer_change_output_directory | 0.917 | 0.040 | 0.985 | |
BrickContainer_get_path_to_file | 0.732 | 0.036 | 0.768 | |
BrickContainer_list_chromosomes | 0.752 | 0.015 | 0.769 | |
BrickContainer_list_experiment_name | 0.736 | 0.008 | 0.744 | |
BrickContainer_list_files | 0.782 | 0.019 | 0.803 | |
BrickContainer_list_output_directory | 0.722 | 0.021 | 0.742 | |
BrickContainer_list_resolutions | 0.817 | 0.007 | 0.825 | |
BrickContainer_unlink_resolution | 1.725 | 0.044 | 1.769 | |
Brick_add_ranges | 2.029 | 0.055 | 2.085 | |
Brick_call_compartments | 1.256 | 0.060 | 1.316 | |
Brick_export_to_sparse | 2.277 | 0.095 | 2.374 | |
Brick_fetch_range_index | 0.853 | 0.029 | 0.882 | |
Brick_fetch_row_vector | 1.333 | 0.031 | 1.365 | |
Brick_get_bintable | 0.757 | 0.060 | 0.817 | |
Brick_get_chrominfo | 0.771 | 0.004 | 0.775 | |
Brick_get_entire_matrix | 1.118 | 0.036 | 1.154 | |
Brick_get_matrix | 1.738 | 0.048 | 1.786 | |
Brick_get_matrix_mcols | 1.026 | 0.024 | 1.050 | |
Brick_get_matrix_within_coords | 1.472 | 0.056 | 1.529 | |
Brick_get_ranges | 0.766 | 0.019 | 0.785 | |
Brick_get_values_by_distance | 1.387 | 0.041 | 1.441 | |
Brick_get_vector_values | 1.107 | 0.032 | 1.140 | |
Brick_list_matrices | 0.812 | 0.020 | 0.833 | |
Brick_list_matrix_mcols | 0.733 | 0.020 | 0.754 | |
Brick_list_mcool_normalisations | 0.001 | 0.000 | 0.001 | |
Brick_list_mcool_resolutions | 0.001 | 0.000 | 0.000 | |
Brick_list_rangekeys | 0.703 | 0.024 | 0.727 | |
Brick_list_ranges_mcols | 0.744 | 0.004 | 0.749 | |
Brick_load_cis_matrix_till_distance | 1.137 | 0.028 | 1.165 | |
Brick_load_data_from_mcool | 0.001 | 0.000 | 0.000 | |
Brick_load_data_from_sparse | 0 | 0 | 0 | |
Brick_load_matrix | 1.052 | 0.047 | 1.098 | |
Brick_local_score_differentiator | 1.646 | 0.052 | 1.699 | |
Brick_make_ranges | 0.005 | 0.003 | 0.009 | |
Brick_matrix_dimensions | 1.027 | 0.016 | 1.043 | |
Brick_matrix_exists | 0.990 | 0.017 | 1.007 | |
Brick_matrix_filename | 1.099 | 0.039 | 1.142 | |
Brick_matrix_isdone | 0.998 | 0.048 | 1.046 | |
Brick_matrix_issparse | 1.025 | 0.036 | 1.061 | |
Brick_matrix_maxdist | 1.028 | 0.036 | 1.064 | |
Brick_matrix_minmax | 1.033 | 0.024 | 1.057 | |
Brick_mcool_normalisation_exists | 0 | 0 | 0 | |
Brick_rangekey_exists | 0.722 | 0.016 | 0.751 | |
Brick_return_region_position | 0.898 | 0.019 | 0.982 | |
Brick_vizart_plot_heatmap | 1.995 | 0.036 | 2.032 | |
Create_many_Bricks | 0.768 | 0.008 | 0.776 | |
Create_many_Bricks_from_mcool | 0.000 | 0.000 | 0.001 | |
load_BrickContainer | 0.792 | 0.008 | 0.800 | |