Multiple platform build/check report for BioC 3.20 - CHECK results for graper on palomino8

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4688
palomino8	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4284
lconway	macOS 12.7.1 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4455
kjohnson3	macOS 13.6.5 Ventura	arm64	4.4.1 (2024-06-14) -- "Race for Your Life"	4404
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for graper on palomino8

To the developers/maintainers of the graper package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: graper

Version: 1.21.0

Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:graper.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings graper_1.21.0.tar.gz

StartedAt: 2024-07-24 00:43:00 -0400 (Wed, 24 Jul 2024)

EndedAt: 2024-07-24 00:44:33 -0400 (Wed, 24 Jul 2024)

EllapsedTime: 92.2 seconds

RetCode: 0

Status: OK

CheckDir: graper.Rcheck

Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:graper.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings graper_1.21.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/graper.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'graper/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'graper' version '1.21.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'graper' can be installed ... OK
* used C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
* checking C++ specification ... NOTE
  Specified C++11: please drop specification unless essential
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'F:/biocbuild/bbs-3.20-bioc/R/library/graper/libs/x64/graper.dll':
  Found '_exit', possibly from '_exit' (C)
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'F:/biocbuild/bbs-3.20-bioc/meat/graper.Rcheck/00check.log'
for details.

Installation output

graper.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library'
* installing *source* package 'graper' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
using C++11
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/BH/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/BH/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c fit_graper.cpp -o fit_graper.o
In file included from F:/biocbuild/bbs-3.20-bioc/R/library/BH/include/boost/math/special_functions/detail/round_fwd.hpp:11,
                 from F:/biocbuild/bbs-3.20-bioc/R/library/BH/include/boost/math/special_functions/math_fwd.hpp:29,
                 from F:/biocbuild/bbs-3.20-bioc/R/library/BH/include/boost/math/special_functions/digamma.hpp:15,
                 from graper_linear_dense_ff.h:2,
                 from fit_graper.cpp:4:
F:/biocbuild/bbs-3.20-bioc/R/library/BH/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]
   23 | #    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
      |      ^~~~~~~
g++ -shared -s -static-libgcc -o graper.dll tmp.def RcppExports.o fit_graper.o -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.20-bioc/R/library/00LOCK-graper/00new/graper/libs/x64
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)

Tests output

graper.Rcheck/tests/testthat.Rout


R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-877.744
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-576.423
ELB improved by 301.32

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-517.11
ELB improved by 59.313

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-481.435
ELB improved by 35.6751

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-466.202
ELB improved by 15.2338

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.524
ELB improved by 6.67749

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.374
ELB improved by 4.14972

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.87
ELB improved by 3.50463

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.438
ELB improved by 3.43184

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.918
ELB improved by 3.5202

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.398
ELB improved by 3.51988

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.149
ELB improved by 3.24885

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.449
ELB improved by 2.69995

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.406
ELB improved by 2.04328

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.952
ELB improved by 1.4532

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.939
ELB improved by 1.01378

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.21
ELB improved by 0.728714

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.652
ELB improved by 0.558091

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.194
ELB improved by 0.458195

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.795
ELB improved by 0.398586

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.434
ELB improved by 0.361372

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.097
ELB improved by 0.3365

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.779
ELB improved by 0.318294

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.475
ELB improved by 0.303518

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.185
ELB improved by 0.290361

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.907
ELB improved by 0.277879

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.641
ELB improved by 0.26567

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.388
ELB improved by 0.253661

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.146
ELB improved by 0.241961

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.915
ELB improved by 0.23077

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.695
ELB improved by 0.220313

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.484
ELB improved by 0.210818

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.281
ELB improved by 0.202515

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.086
ELB improved by 0.195656

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.895
ELB improved by 0.190574

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.707
ELB improved by 0.187768

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.519
ELB improved by 0.188035

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.327
ELB improved by 0.192578

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.124
ELB improved by 0.202798

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.905
ELB improved by 0.218945

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.668
ELB improved by 0.23719

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.419
ELB improved by 0.248835

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.171
ELB improved by 0.24758

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.935
ELB improved by 0.236197

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.714
ELB improved by 0.221348

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.507
ELB improved by 0.207168

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.312
ELB improved by 0.194902

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.127
ELB improved by 0.184448

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.952
ELB improved by 0.175333

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.785
ELB improved by 0.167088

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.626
ELB improved by 0.159367

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.474
ELB improved by 0.151945

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.329
ELB improved by 0.1447

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.191
ELB improved by 0.137586

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.061
ELB improved by 0.130602

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.937
ELB improved by 0.123757

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.82
ELB improved by 0.117038

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.71
ELB improved by 0.110384

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.606
ELB improved by 0.10369

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.509
ELB improved by 0.0968406

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.419
ELB improved by 0.08976

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.337
ELB improved by 0.0824587

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.262
ELB improved by 0.0750435

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.194
ELB improved by 0.0676903

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.134
ELB improved by 0.0605954

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.08
ELB improved by 0.0539312

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.032
ELB improved by 0.0478214

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.989
ELB improved by 0.0423342

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.952
ELB improved by 0.0374897

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.919
ELB improved by 0.0332721

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.889
ELB improved by 0.0296433

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.863
ELB improved by 0.026555

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.839
ELB improved by 0.0239591

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.817
ELB improved by 0.0218166

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.797
ELB improved by 0.0201065

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.778
ELB improved by 0.0188374

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.76
ELB improved by 0.0180628

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.742
ELB improved by 0.0179067

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.723
ELB improved by 0.0185982

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.703
ELB improved by 0.0205122

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.679
ELB improved by 0.0241737

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.648
ELB improved by 0.030107

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.61
ELB improved by 0.038303

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.563
ELB improved by 0.0472631

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.509
ELB improved by 0.0536229

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.455
ELB improved by 0.054166

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.406
ELB improved by 0.0489984

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.365
ELB improved by 0.0413481

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.33
ELB improved by 0.0343592

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.301
ELB improved by 0.0293829

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.275
ELB improved by 0.0264675

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.249
ELB improved by 0.0252247

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.224
ELB improved by 0.0252567

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.198
ELB improved by 0.0262415

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.17
ELB improved by 0.0278781

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.14
ELB improved by 0.0298018

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.109
ELB improved by 0.031538

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.076
ELB improved by 0.0325561

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.044
ELB improved by 0.032449

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.012
ELB improved by 0.0311441

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.983
ELB improved by 0.0289623

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.957
ELB improved by 0.0264461

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.933
ELB improved by 0.0240958

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.911
ELB improved by 0.0222093

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.89
ELB improved by 0.0208773

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.87
ELB improved by 0.0200563

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.85
ELB improved by 0.0196374

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.831
ELB improved by 0.0194802

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.811
ELB improved by 0.01942

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.792
ELB improved by 0.0192709

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.773
ELB improved by 0.0188495

iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.755
ELB improved by 0.0180241

iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.738
ELB improved by 0.0167694

iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.723
ELB improved by 0.0151838

iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.71
ELB improved by 0.0134478

iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.698
ELB improved by 0.0117484

iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.688
ELB improved by 0.0102194

iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.679
ELB improved by 0.00892446

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-837.419
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-585.376
ELB improved by 252.043

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-524.026
ELB improved by 61.3504

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-474.099
ELB improved by 49.9265

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.3
ELB improved by 27.799

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.491
ELB improved by 11.8088

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.871
ELB improved by 5.61997

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.156
ELB improved by 3.71543

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.95
ELB improved by 3.20628

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.684
ELB improved by 3.26585

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.033
ELB improved by 3.65094

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.89
ELB improved by 4.14302

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.452
ELB improved by 4.43806

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.195
ELB improved by 4.25674

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.628
ELB improved by 3.56713

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.977
ELB improved by 2.65122

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.114
ELB improved by 1.86261

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.777
ELB improved by 1.33717

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.752
ELB improved by 1.02454

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.916
ELB improved by 0.836849

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.202
ELB improved by 0.713236

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.58
ELB improved by 0.622099

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.031
ELB improved by 0.549691

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.539
ELB improved by 0.491271

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.093
ELB improved by 0.446521

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.675
ELB improved by 0.418214

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.262
ELB improved by 0.412966

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.822
ELB improved by 0.439851

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.33
ELB improved by 0.491464

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.814
ELB improved by 0.515976

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.332
ELB improved by 0.482175

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.9
ELB improved by 0.431778

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.506
ELB improved by 0.394016

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.138
ELB improved by 0.368795

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.787
ELB improved by 0.350662

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.451
ELB improved by 0.335468

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.131
ELB improved by 0.320371

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.828
ELB improved by 0.303455

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.544
ELB improved by 0.283712

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.283
ELB improved by 0.261139

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.046
ELB improved by 0.236754

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.834
ELB improved by 0.212462

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.643
ELB improved by 0.191008

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.466
ELB improved by 0.176633

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.288
ELB improved by 0.178332

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.065
ELB improved by 0.222706

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.667
ELB improved by 0.398285

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.809
ELB improved by 0.857259

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.6
ELB improved by 1.20955

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.588
ELB improved by 1.01184

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.852
ELB improved by 0.735674

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.388
ELB improved by 0.464041

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.132
ELB improved by 0.256562

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.98
ELB improved by 0.151472

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.877
ELB improved by 0.102797

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.799
ELB improved by 0.078142

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.735
ELB improved by 0.0643226

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.679
ELB improved by 0.0562613

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.627
ELB improved by 0.0517358

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.577
ELB improved by 0.0494878

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.529
ELB improved by 0.0486577

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.48
ELB improved by 0.0487709

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.43
ELB improved by 0.0500209

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.376
ELB improved by 0.0537204

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.313
ELB improved by 0.0630107

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.229
ELB improved by 0.0844008

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.099
ELB improved by 0.129786

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.892
ELB improved by 0.207354

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.619
ELB improved by 0.272995

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.375
ELB improved by 0.243648

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.217
ELB improved by 0.158516

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.122
ELB improved by 0.0941594

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.064
ELB improved by 0.0585366

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.024
ELB improved by 0.0396432

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.995
ELB improved by 0.0293409

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.971
ELB improved by 0.0235057

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.951
ELB improved by 0.0201151

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.933
ELB improved by 0.0181574

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.916
ELB improved by 0.0171114

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.899
ELB improved by 0.0167027

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.883
ELB improved by 0.016781

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.865
ELB improved by 0.0172523

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.847
ELB improved by 0.0180318

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.828
ELB improved by 0.0190073

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.808
ELB improved by 0.0200136

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.787
ELB improved by 0.0208303

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.766
ELB improved by 0.0212184

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.745
ELB improved by 0.02099

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.725
ELB improved by 0.0200791

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.707
ELB improved by 0.0185662

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.69
ELB improved by 0.0166428

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.675
ELB improved by 0.0145423

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.663
ELB improved by 0.0124753

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.652
ELB improved by 0.0105917

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.643
ELB improved by 0.00897036

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-851.441
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-544.699
ELB improved by 306.743

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-485.734
ELB improved by 58.9651

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.233
ELB improved by 31.5011

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.096
ELB improved by 12.1364

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.779
ELB improved by 5.31679

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.389
ELB improved by 3.39013

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.607
ELB improved by 2.78187

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.945
ELB improved by 2.66252

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.156
ELB improved by 2.78927

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.104
ELB improved by 3.05197

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.742
ELB improved by 3.36174

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.143
ELB improved by 3.59865

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.519
ELB improved by 3.62461

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.173
ELB improved by 3.34584

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.389
ELB improved by 2.78345

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.275
ELB improved by 2.11463

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.753
ELB improved by 1.52133

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.665
ELB improved by 1.08791

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.852
ELB improved by 0.813793

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.199
ELB improved by 0.65272

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.641
ELB improved by 0.558356

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.141
ELB improved by 0.500096

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.68
ELB improved by 0.460223

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.251
ELB improved by 0.428882

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.851
ELB improved by 0.400812

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.477
ELB improved by 0.373472

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.131
ELB improved by 0.345957

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.813
ELB improved by 0.318318

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.522
ELB improved by 0.291084

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.257
ELB improved by 0.264911

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.017
ELB improved by 0.240351

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.799
ELB improved by 0.217757

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.602
ELB improved by 0.197264

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.423
ELB improved by 0.178841

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.26
ELB improved by 0.162346

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.113
ELB improved by 0.147583

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.978
ELB improved by 0.134342

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.856
ELB improved by 0.122422

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.744
ELB improved by 0.111646

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.642
ELB improved by 0.101865

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.55
ELB improved by 0.0929545

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.465
ELB improved by 0.0848134

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.387
ELB improved by 0.0773596

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.317
ELB improved by 0.0705256

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.253
ELB improved by 0.0642557

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.194
ELB improved by 0.0585029

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.141
ELB improved by 0.0532267

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.092
ELB improved by 0.0483916

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.048
ELB improved by 0.0439659

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.009
ELB improved by 0.0399206

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.972
ELB improved by 0.0362286

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.939
ELB improved by 0.0328649

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.91
ELB improved by 0.0298054

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.883
ELB improved by 0.0270276

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.858
ELB improved by 0.0245097

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.836
ELB improved by 0.0222312

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.816
ELB improved by 0.0201724

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.797
ELB improved by 0.0183149

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.781
ELB improved by 0.0166413

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.766
ELB improved by 0.0151349

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.752
ELB improved by 0.0137807

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.739
ELB improved by 0.0125641

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.728
ELB improved by 0.0114721

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.717
ELB improved by 0.0104925

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.708
ELB improved by 0.00961401

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-862.719
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-564.955
ELB improved by 297.764

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-503.607
ELB improved by 61.3479

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-465.424
ELB improved by 38.1835

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.4
ELB improved by 16.0239

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.139
ELB improved by 6.2609

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.645
ELB improved by 3.49379

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.137
ELB improved by 2.50866

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.084
ELB improved by 2.05232

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.279
ELB improved by 1.80503

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.643
ELB improved by 1.63667

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.145
ELB improved by 1.49794

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.773
ELB improved by 1.37139

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.522
ELB improved by 1.2516

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.384
ELB improved by 1.13763

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.354
ELB improved by 1.02991

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.425
ELB improved by 0.92906

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.59
ELB improved by 0.835458

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.84
ELB improved by 0.749216

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.17
ELB improved by 0.670126

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.573
ELB improved by 0.597632

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.042
ELB improved by 0.530864

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.573
ELB improved by 0.46882

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.162
ELB improved by 0.410652

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.806
ELB improved by 0.355953

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.501
ELB improved by 0.304894

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.243
ELB improved by 0.258117

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.027
ELB improved by 0.216433

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.846
ELB improved by 0.180468

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.696
ELB improved by 0.150423

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.57
ELB improved by 0.126024

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.463
ELB improved by 0.106639

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.372
ELB improved by 0.0914533

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.292
ELB improved by 0.0796314

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.222
ELB improved by 0.0704214

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.159
ELB improved by 0.063199

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.101
ELB improved by 0.0574741

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.048
ELB improved by 0.0528754

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.999
ELB improved by 0.0491282

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.953
ELB improved by 0.0460315

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.91
ELB improved by 0.0434396

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.868
ELB improved by 0.0412461

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.829
ELB improved by 0.0393734

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.791
ELB improved by 0.0377642

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.755
ELB improved by 0.0363755

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.72
ELB improved by 0.0351746

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.686
ELB improved by 0.0341363

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.652
ELB improved by 0.0332406

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.62
ELB improved by 0.0324716

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.588
ELB improved by 0.0318161

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.557
ELB improved by 0.0312634

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.526
ELB improved by 0.0308044

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.496
ELB improved by 0.0304315

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.465
ELB improved by 0.0301383

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.435
ELB improved by 0.0299191

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.406
ELB improved by 0.0297693

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.376
ELB improved by 0.029685

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.346
ELB improved by 0.029663

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.317
ELB improved by 0.0297005

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.287
ELB improved by 0.0297955

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.257
ELB improved by 0.0299465

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.227
ELB improved by 0.0301526

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.196
ELB improved by 0.0304137

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.166
ELB improved by 0.0307301

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.135
ELB improved by 0.0311034

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.103
ELB improved by 0.0315362

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.071
ELB improved by 0.032033

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.038
ELB improved by 0.0326003

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.005
ELB improved by 0.0332479

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.971
ELB improved by 0.0339901

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.936
ELB improved by 0.0348468

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.9
ELB improved by 0.0358467

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.863
ELB improved by 0.0370297

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.825
ELB improved by 0.0384512

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.785
ELB improved by 0.0401879

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.742
ELB improved by 0.0423445

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.697
ELB improved by 0.0450633

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.649
ELB improved by 0.0485326

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.596
ELB improved by 0.0529938

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.537
ELB improved by 0.0587375

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.471
ELB improved by 0.0660755

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.396
ELB improved by 0.0752708

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.309
ELB improved by 0.0864185

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.21
ELB improved by 0.0993159

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.097
ELB improved by 0.113437

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.968
ELB improved by 0.128135

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.825
ELB improved by 0.143054

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.667
ELB improved by 0.158449

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.492
ELB improved by 0.175171

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.297
ELB improved by 0.19429

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.081
ELB improved by 0.216522

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.839
ELB improved by 0.241551

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.572
ELB improved by 0.267496

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.281
ELB improved by 0.291083

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.972
ELB improved by 0.30883

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.653
ELB improved by 0.318511

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.333
ELB improved by 0.320009

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.018
ELB improved by 0.315627

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.708
ELB improved by 0.310063

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.398
ELB improved by 0.309804

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.076
ELB improved by 0.321479

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.728
ELB improved by 0.348572

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.34
ELB improved by 0.387491

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.912
ELB improved by 0.428671

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.448
ELB improved by 0.463504

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.965
ELB improved by 0.483577

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.489
ELB improved by 0.475236

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.057
ELB improved by 0.432822

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.681
ELB improved by 0.375658

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.345
ELB improved by 0.335505

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.013
ELB improved by 0.332773

iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.662
ELB improved by 0.351138

iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.333
ELB improved by 0.328561

iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.078
ELB improved by 0.255145

iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.894
ELB improved by 0.183767

iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.765
ELB improved by 0.128888

iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.678
ELB improved by 0.0868474

iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.621
ELB improved by 0.0571917

iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.583
ELB improved by 0.0382441

iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.556
ELB improved by 0.0268097

iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.536
ELB improved by 0.0199844

iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.52
ELB improved by 0.0158047

iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.507
ELB improved by 0.0131119

iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.496
ELB improved by 0.0112632

iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.486
ELB improved by 0.00990978

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
   2.20    0.26    3.17

Example timings

graper.Rcheck/graper-Ex.timings

name	user	system	elapsed
coef.graper	0.06	0.00	0.06
getPIPs	0.06	0.00	0.06
graper	0.09	0.01	0.11
makeExampleData	0.02	0.00	0.02
makeExampleDataWithUnequalGroups	0.01	0.00	0.01
plotELBO	0.22	0.03	0.25
plotGroupPenalties	1.24	0.05	1.29
plotPosterior	0.73	0.01	0.75
predict.graper	2.09	0.08	2.17
print.graper	0.07	0.00	0.06