Britta Velten
| Snapshot Date: 2024-05-30 18:57:37 -0400 (Thu, 30 May 2024) |
| git_url: https://git.bioconductor.org/packages/graper |
| git_branch: devel |
| git_last_commit: 7b45fcc |
| git_last_commit_date: 2024-04-30 11:11:42 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-05-31 19:28:58 -0400 (Fri, 31 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4669 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" | 4404 |
| merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4431 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4384 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 878/2233 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.21.0 (landing page) Britta Velten
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: graper |
| Version: 1.21.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings graper_1.21.0.tar.gz |
| StartedAt: 2024-05-31 04:27:03 -0400 (Fri, 31 May 2024) |
| EndedAt: 2024-05-31 04:28:23 -0400 (Fri, 31 May 2024) |
| EllapsedTime: 80.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings graper_1.21.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/graper.Rcheck’
* using R version 4.4.0 RC (2024-04-16 r86468)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.21.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
* checking C++ specification ... NOTE
Specified C++11: please drop specification unless essential
* checking installed package size ... NOTE
installed size is 6.2Mb
sub-directories of 1Mb or more:
libs 6.1Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 4 NOTEs
See
‘/home/biocbuild/bbs-3.20-bioc/meat/graper.Rcheck/00check.log’
for details.
graper.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘graper’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
using C++11
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -c fit_graper.cpp -o fit_graper.o
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/detail/round_fwd.hpp:11,
from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/math_fwd.hpp:29,
from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/digamma.hpp:15,
from graper_linear_dense_ff.h:2,
from fit_graper.cpp:4:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]
23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
| ^~~~~~~
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.20-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)
graper.Rcheck/tests/testthat.Rout
R version 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-854.373
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-582.107
ELB improved by 272.267
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-521.848
ELB improved by 60.2589
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-476.375
ELB improved by 45.473
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.249
ELB improved by 23.126
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.755
ELB improved by 9.49336
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.044
ELB improved by 4.71073
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.854
ELB improved by 3.19043
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.254
ELB improved by 2.59973
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.84
ELB improved by 2.41465
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.461
ELB improved by 2.37902
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.102
ELB improved by 2.35904
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.824
ELB improved by 2.278
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.726
ELB improved by 2.09774
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.899
ELB improved by 1.82636
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.388
ELB improved by 1.51135
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.174
ELB improved by 1.2146
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.188
ELB improved by 0.98543
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.354
ELB improved by 0.834116
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.634
ELB improved by 0.719815
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.037
ELB improved by 0.597526
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.566
ELB improved by 0.470196
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.205
ELB improved by 0.361057
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.924
ELB improved by 0.281305
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.695
ELB improved by 0.229082
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.499
ELB improved by 0.196322
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.323
ELB improved by 0.175425
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.162
ELB improved by 0.161498
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.01
ELB improved by 0.151778
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.865
ELB improved by 0.144724
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.726
ELB improved by 0.139448
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.59
ELB improved by 0.135412
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.458
ELB improved by 0.132273
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.328
ELB improved by 0.129808
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.2
ELB improved by 0.127867
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.074
ELB improved by 0.126348
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.949
ELB improved by 0.12518
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.825
ELB improved by 0.124303
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.701
ELB improved by 0.123655
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.578
ELB improved by 0.123164
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.455
ELB improved by 0.122736
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.333
ELB improved by 0.122263
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.211
ELB improved by 0.121639
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.09
ELB improved by 0.120782
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.971
ELB improved by 0.11965
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.852
ELB improved by 0.118255
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.736
ELB improved by 0.116661
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.621
ELB improved by 0.114974
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.507
ELB improved by 0.113338
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.396
ELB improved by 0.111916
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.285
ELB improved by 0.110897
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.174
ELB improved by 0.110488
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.063
ELB improved by 0.110938
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.951
ELB improved by 0.112573
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.835
ELB improved by 0.115875
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.713
ELB improved by 0.121643
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.582
ELB improved by 0.131334
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.434
ELB improved by 0.147752
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.258
ELB improved by 0.176277
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.032
ELB improved by 0.225599
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.732
ELB improved by 0.30052
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.356
ELB improved by 0.376168
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.95
ELB improved by 0.405281
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.556
ELB improved by 0.394527
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.176
ELB improved by 0.379447
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.807
ELB improved by 0.369096
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.446
ELB improved by 0.361497
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.086
ELB improved by 0.359221
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.711
ELB improved by 0.374958
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.275
ELB improved by 0.43632
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.711
ELB improved by 0.563899
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.028
ELB improved by 0.683576
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.311
ELB improved by 0.716963
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.582
ELB improved by 0.728917
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.824
ELB improved by 0.757869
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.045
ELB improved by 0.779234
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.302
ELB improved by 0.742744
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.696
ELB improved by 0.606452
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.266
ELB improved by 0.429307
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.973
ELB improved by 0.293667
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.757
ELB improved by 0.215561
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.576
ELB improved by 0.181366
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.405
ELB improved by 0.170198
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.246
ELB improved by 0.159536
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.105
ELB improved by 0.140917
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.979
ELB improved by 0.126298
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.851
ELB improved by 0.127391
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.708
ELB improved by 0.143147
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.548
ELB improved by 0.159767
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.393
ELB improved by 0.155715
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.269
ELB improved by 0.12396
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.186
ELB improved by 0.0828912
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.135
ELB improved by 0.0510605
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.103
ELB improved by 0.0319962
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.081
ELB improved by 0.0217739
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.065
ELB improved by 0.0163483
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.051
ELB improved by 0.0132814
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.04
ELB improved by 0.0113554
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.03
ELB improved by 0.0100064
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.021
ELB improved by 0.00897659
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-865.859
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-580.485
ELB improved by 285.374
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-520.259
ELB improved by 60.2267
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-477.757
ELB improved by 42.5021
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.048
ELB improved by 18.7087
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.271
ELB improved by 6.77691
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.39
ELB improved by 3.88135
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.465
ELB improved by 2.92465
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.929
ELB improved by 2.53628
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.56
ELB improved by 2.36855
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.278
ELB improved by 2.28265
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.073
ELB improved by 2.20507
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.994
ELB improved by 2.07897
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.126
ELB improved by 1.86789
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.55
ELB improved by 1.57605
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.299
ELB improved by 1.25027
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.35
ELB improved by 0.949815
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.638
ELB improved by 0.711876
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.095
ELB improved by 0.542839
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.664
ELB improved by 0.43068
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.305
ELB improved by 0.358906
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.992
ELB improved by 0.313538
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.707
ELB improved by 0.28473
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.441
ELB improved by 0.266166
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.187
ELB improved by 0.253976
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.941
ELB improved by 0.245825
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.701
ELB improved by 0.240301
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.464
ELB improved by 0.236532
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.23
ELB improved by 0.233949
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.998
ELB improved by 0.23214
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.767
ELB improved by 0.230727
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.538
ELB improved by 0.229274
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.311
ELB improved by 0.227253
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.087
ELB improved by 0.22411
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.867
ELB improved by 0.219448
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.654
ELB improved by 0.213201
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.448
ELB improved by 0.205659
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.251
ELB improved by 0.197332
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.062
ELB improved by 0.188766
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.882
ELB improved by 0.180432
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.709
ELB improved by 0.172719
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.543
ELB improved by 0.165961
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.383
ELB improved by 0.160507
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.226
ELB improved by 0.156794
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.07
ELB improved by 0.155476
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.913
ELB improved by 0.157663
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.747
ELB improved by 0.165412
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.565
ELB improved by 0.18284
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.346
ELB improved by 0.218706
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.054
ELB improved by 0.29156
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.623
ELB improved by 0.431474
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.98
ELB improved by 0.642576
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.144
ELB improved by 0.836671
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.206
ELB improved by 0.937728
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.249
ELB improved by 0.957137
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.364
ELB improved by 0.884829
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.583
ELB improved by 0.780722
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.87
ELB improved by 0.713645
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.16
ELB improved by 0.709985
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.383
ELB improved by 0.776259
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.516
ELB improved by 0.867716
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.635
ELB improved by 0.880465
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.86
ELB improved by 0.774744
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.239
ELB improved by 0.62171
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.744
ELB improved by 0.494922
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.325
ELB improved by 0.418401
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.946
ELB improved by 0.379595
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.598
ELB improved by 0.347322
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.299
ELB improved by 0.299383
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.057
ELB improved by 0.2418
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.866
ELB improved by 0.190882
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.712
ELB improved by 0.153928
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.583
ELB improved by 0.129518
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.469
ELB improved by 0.113536
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.367
ELB improved by 0.102728
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.271
ELB improved by 0.0954614
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.181
ELB improved by 0.0906632
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.094
ELB improved by 0.0863325
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.015
ELB improved by 0.0795589
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.946
ELB improved by 0.0688518
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.89
ELB improved by 0.0559282
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.846
ELB improved by 0.0439714
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.811
ELB improved by 0.0349115
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.782
ELB improved by 0.0289532
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.756
ELB improved by 0.0255365
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.732
ELB improved by 0.0241327
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.708
ELB improved by 0.0245886
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.68
ELB improved by 0.0273222
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.647
ELB improved by 0.0336869
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.6
ELB improved by 0.0468071
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.527
ELB improved by 0.0729219
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.406
ELB improved by 0.120618
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.219
ELB improved by 0.187198
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.984
ELB improved by 0.235411
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.754
ELB improved by 0.229469
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.563
ELB improved by 0.191595
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.408
ELB improved by 0.154388
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.282
ELB improved by 0.126309
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.176
ELB improved by 0.106108
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.084
ELB improved by 0.0923616
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404
ELB improved by 0.083508
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.924
ELB improved by 0.0764429
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.856
ELB improved by 0.0674471
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.801
ELB improved by 0.0550344
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.76
ELB improved by 0.0411243
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.731
ELB improved by 0.0287343
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.712
ELB improved by 0.0194629
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.699
ELB improved by 0.0132667
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.689
ELB improved by 0.0093863
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-827.592
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-578.037
ELB improved by 249.556
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-521.811
ELB improved by 56.2255
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-483.725
ELB improved by 38.0858
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-465.539
ELB improved by 18.1864
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.267
ELB improved by 8.27172
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.459
ELB improved by 4.80793
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.884
ELB improved by 3.57583
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.673
ELB improved by 3.21083
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.623
ELB improved by 3.0499
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.773
ELB improved by 2.84962
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.235
ELB improved by 2.53865
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.108
ELB improved by 2.12681
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.434
ELB improved by 1.67373
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.168
ELB improved by 1.26589
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.208
ELB improved by 0.960071
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.456
ELB improved by 0.752275
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.848
ELB improved by 0.607748
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.347
ELB improved by 0.501256
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.922
ELB improved by 0.424503
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.55
ELB improved by 0.372374
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.212
ELB improved by 0.33807
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.896
ELB improved by 0.315655
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.595
ELB improved by 0.301201
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.303
ELB improved by 0.292321
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.015
ELB improved by 0.287507
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.729
ELB improved by 0.285729
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.443
ELB improved by 0.286235
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.155
ELB improved by 0.288473
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.863
ELB improved by 0.292068
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.566
ELB improved by 0.29684
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.263
ELB improved by 0.302826
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.953
ELB improved by 0.310295
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.633
ELB improved by 0.319754
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.301
ELB improved by 0.331928
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.953
ELB improved by 0.347729
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.585
ELB improved by 0.368202
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.191
ELB improved by 0.394468
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.763
ELB improved by 0.427626
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.294
ELB improved by 0.468612
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.776
ELB improved by 0.51795
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.201
ELB improved by 0.575385
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.562
ELB improved by 0.639367
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.855
ELB improved by 0.706496
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.084
ELB improved by 0.77124
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.257
ELB improved by 0.8267
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.389
ELB improved by 0.86804
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.488
ELB improved by 0.90156
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.524
ELB improved by 0.96331
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.386
ELB improved by 1.13783
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.94
ELB improved by 1.44656
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.46
ELB improved by 1.47984
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.407
ELB improved by 1.05331
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.766
ELB improved by 0.640417
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.374
ELB improved by 0.392814
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.112
ELB improved by 0.26172
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.914
ELB improved by 0.198116
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.739
ELB improved by 0.174864
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.563
ELB improved by 0.176286
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.38
ELB improved by 0.182972
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.208
ELB improved by 0.171171
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.07
ELB improved by 0.138225
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.968
ELB improved by 0.10194
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.895
ELB improved by 0.0729662
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.843
ELB improved by 0.0524064
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.804
ELB improved by 0.038814
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.774
ELB improved by 0.0301955
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.749
ELB improved by 0.0246779
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.728
ELB improved by 0.0209417
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.71
ELB improved by 0.0182188
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.694
ELB improved by 0.0161021
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.68
ELB improved by 0.0143793
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.667
ELB improved by 0.0129345
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.655
ELB improved by 0.0116999
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.644
ELB improved by 0.0106318
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.635
ELB improved by 0.0097
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-867.596
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-564.675
ELB improved by 302.921
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-498.957
ELB improved by 65.718
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.454
ELB improved by 37.5032
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.644
ELB improved by 14.8103
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.199
ELB improved by 6.44526
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.072
ELB improved by 4.12709
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.832
ELB improved by 3.23942
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.976
ELB improved by 2.85599
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.301
ELB improved by 2.67566
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.727
ELB improved by 2.5735
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.215
ELB improved by 2.51206
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.733
ELB improved by 2.48156
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.259
ELB improved by 2.47455
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.788
ELB improved by 2.4711
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.358
ELB improved by 2.43007
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.061
ELB improved by 2.29629
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.031
ELB improved by 2.03004
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.383
ELB improved by 1.64814
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.155
ELB improved by 1.22866
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.297
ELB improved by 0.857238
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.718
ELB improved by 0.579544
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.321
ELB improved by 0.396544
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.037
ELB improved by 0.284394
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.82
ELB improved by 0.216478
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.647
ELB improved by 0.173761
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.502
ELB improved by 0.145098
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.377
ELB improved by 0.124496
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.268
ELB improved by 0.108793
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.172
ELB improved by 0.0962828
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.086
ELB improved by 0.0860017
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.009
ELB improved by 0.077366
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.939
ELB improved by 0.069997
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.875
ELB improved by 0.0636324
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.817
ELB improved by 0.0580803
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.764
ELB improved by 0.0531952
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.715
ELB improved by 0.048864
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.67
ELB improved by 0.0449976
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.628
ELB improved by 0.041525
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.59
ELB improved by 0.0383897
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.554
ELB improved by 0.0355466
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.521
ELB improved by 0.0329597
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.491
ELB improved by 0.0306002
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.462
ELB improved by 0.028445
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.436
ELB improved by 0.0264752
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.411
ELB improved by 0.0246751
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.388
ELB improved by 0.0230312
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.367
ELB improved by 0.021531
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.346
ELB improved by 0.0201633
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.328
ELB improved by 0.0189168
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.31
ELB improved by 0.0177809
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.293
ELB improved by 0.0167451
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.277
ELB improved by 0.0157992
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.262
ELB improved by 0.0149339
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.248
ELB improved by 0.0141402
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.235
ELB improved by 0.01341
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.222
ELB improved by 0.0127362
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.21
ELB improved by 0.0121123
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.198
ELB improved by 0.0115327
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.187
ELB improved by 0.0109924
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.177
ELB improved by 0.0104874
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.167
ELB improved by 0.010014
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.157
ELB improved by 0.00956897
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
2.026 0.156 2.171
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.056 | 0.000 | 0.058 | |
| getPIPs | 0.049 | 0.004 | 0.053 | |
| graper | 0.078 | 0.016 | 0.094 | |
| makeExampleData | 0.008 | 0.004 | 0.011 | |
| makeExampleDataWithUnequalGroups | 0.013 | 0.000 | 0.013 | |
| plotELBO | 0.225 | 0.023 | 0.249 | |
| plotGroupPenalties | 0.845 | 0.057 | 0.901 | |
| plotPosterior | 0.439 | 0.027 | 0.467 | |
| predict.graper | 2.064 | 0.012 | 2.076 | |
| print.graper | 0.042 | 0.011 | 0.054 | |