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This page was generated on 2024-06-27 11:38 -0400 (Thu, 27 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4691
lconwaymacOS 12.7.1 Montereyx86_644.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" 4405
kjohnson3macOS 13.6.5 Venturaarm644.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" 4354
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 764/2243HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gDRimport 1.3.1  (landing page)
Arkadiusz Gladki
Snapshot Date: 2024-06-26 14:00 -0400 (Wed, 26 Jun 2024)
git_url: https://git.bioconductor.org/packages/gDRimport
git_branch: devel
git_last_commit: 8ad4737
git_last_commit_date: 2024-05-29 06:19:11 -0400 (Wed, 29 May 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.6.5 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for gDRimport on lconway

To the developers/maintainers of the gDRimport package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gDRimport.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: gDRimport
Version: 1.3.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data gDRimport
StartedAt: 2024-06-26 16:41:09 -0400 (Wed, 26 Jun 2024)
EndedAt: 2024-06-26 16:42:01 -0400 (Wed, 26 Jun 2024)
EllapsedTime: 52.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data gDRimport
###
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* checking for file ‘gDRimport/DESCRIPTION’ ... OK
* preparing ‘gDRimport’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ConvertingMAEtoPharmacoSet.Rmd’ using rmarkdown
--- finished re-building ‘ConvertingMAEtoPharmacoSet.Rmd’

--- re-building ‘ConvertingPharmacoSetToGDR.Rmd’ using rmarkdown
--- finished re-building ‘ConvertingPharmacoSetToGDR.Rmd’

--- re-building ‘gDRimport.Rmd’ using rmarkdown

Quitting from lines 48-61 [unnamed-chunk-3] (gDRimport.Rmd)
Error: processing vignette 'gDRimport.Rmd' failed with diagnostics:
There were errors reading the manifest file. Please see the logs:
Error in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/readxl/libs/readxl.so':
  dlopen(/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/readxl/libs/readxl.so, 0x0006): Symbol not found: (_iconv)
  Referenced from: '/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/readxl/libs/readxl.so'
  Expected in: '/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/lib/libR.dylib'

--- failed re-building ‘gDRimport.Rmd’

SUMMARY: processing the following file failed:
  ‘gDRimport.Rmd’

Error: Vignette re-building failed.
Execution halted