Back to Multiple platform build/check report for BioC 3.20:   simplified   long
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This page was generated on 2024-07-24 11:39 -0400 (Wed, 24 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4688
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4284
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4455
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4404
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 202/2248HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodbHmdb 1.11.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-07-23 14:00 -0400 (Tue, 23 Jul 2024)
git_url: https://git.bioconductor.org/packages/biodbHmdb
git_branch: devel
git_last_commit: c3d59a4
git_last_commit_date: 2024-04-30 11:39:05 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

CHECK results for biodbHmdb on palomino8

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbHmdb
Version: 1.11.0
Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings biodbHmdb_1.11.0.tar.gz
StartedAt: 2024-07-23 22:21:27 -0400 (Tue, 23 Jul 2024)
EndedAt: 2024-07-23 22:24:46 -0400 (Tue, 23 Jul 2024)
EllapsedTime: 198.7 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbHmdb.Rcheck
Warnings: 2

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings biodbHmdb_1.11.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbHmdb/DESCRIPTION' ... OK
* this is package 'biodbHmdb' version '1.11.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbHmdb' can be installed ... WARNING
Found the following significant warnings:
  EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
  EntryMaker.hpp:22:14: warning:   'bool EntryMaker::closed' [-Wreorder]
  EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
See 'F:/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck/00install.out' for details.
* used C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'zip'
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'HmdbMetabolitesConn' 'HmdbMetabolitesEntry' 'hmdbToSqlite'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/libs/x64/biodbHmdb.dll':
  Found '_exit', possibly from '_exit' (C)
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 2 NOTEs
See
  'F:/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck/00check.log'
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library'
* installing *source* package 'biodbHmdb' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor 'EntryMaker::EntryMaker()':
EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
   23 |         TagDetector accession_tag;
      |                     ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning:   'bool EntryMaker::closed' [-Wreorder]
   22 |         bool closed;
      |              ^~~~~~
EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
    5 | EntryMaker::EntryMaker() :
      | ^~~~~~~~~~
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -s -static-libgcc -o biodbHmdb.dll tmp.def EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.20-bioc/R/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  'biodbHmdb' 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2024-07-23 22:24:26.280][biodb::testContext]
biodb.INFO [2024-07-23 22:24:26.283][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-23 22:24:26.284][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2024-07-23 22:24:26.286][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-23 22:24:26.287][biodb::testContext]
biodb.INFO [2024-07-23 22:24:26.289][biodb::testThat]
biodb.INFO [2024-07-23 22:24:26.290][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2024-07-23 22:24:26.291][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:24:26.292][biodb::testThat]
biodb.INFO [2024-07-23 22:24:26.440][biodb::testContext]
biodb.INFO [2024-07-23 22:24:26.441][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-23 22:24:26.443][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-07-23 22:24:26.444][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-23 22:24:26.445][biodb::testContext]
biodb.INFO [2024-07-23 22:24:26.474][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-07-23 22:24:26.483][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-23 22:24:26.490][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-23 22:24:26.491][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-23 22:24:26.492][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-23 22:24:26.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.497][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-23 22:24:26.512][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-23 22:24:26.514][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.517][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-23 22:24:26.518][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-23 22:24:26.519][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.523][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-23 22:24:26.524][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-23 22:24:26.525][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-23 22:24:26.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.530][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-23 22:24:26.531][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-23 22:24:26.532][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-23 22:24:26.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.536][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-23 22:24:26.538][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-23 22:24:26.539][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.542][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-23 22:24:26.543][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-23 22:24:26.544][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-23 22:24:26.545][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.549][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-23 22:24:26.550][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-23 22:24:26.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.554][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-23 22:24:26.556][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-23 22:24:26.557][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-23 22:24:26.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.561][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-23 22:24:26.562][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-23 22:24:26.564][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-23 22:24:26.565][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-23 22:24:26.566][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-23 22:24:26.567][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-23 22:24:26.568][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.572][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-23 22:24:26.573][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-23 22:24:26.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.577][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-23 22:24:26.578][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-23 22:24:26.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.583][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-23 22:24:26.584][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-23 22:24:26.585][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.588][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-23 22:24:26.590][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-23 22:24:26.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.594][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-23 22:24:26.595][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-23 22:24:26.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.600][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-23 22:24:26.601][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-23 22:24:26.604][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-23 22:24:26.605][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.609][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-23 22:24:26.610][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-23 22:24:26.611][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-23 22:24:26.612][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.617][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-23 22:24:26.645][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:26.659][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-23 22:24:26.660][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:26.667][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:24:26.669][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:26.670][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:24:26.671][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:26.672][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:24:26.674][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-23 22:24:26.675][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:24:26.676][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:26.677][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-23 22:24:26.678][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:24:26.679][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:26.681][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:26.682][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-23 22:24:26.682][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-23 22:24:26.682][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-23 22:24:26.682][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-23 22:24:26.682][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-23 22:24:26.683][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:24:26.684][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:26.685][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:26.686][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:24:26.688][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:26.689][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:26.690][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:24:26.691][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:26.692][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:24:26.693][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:24:26.694][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:26.695][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:26.697][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-23 22:24:26.699][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:26.700][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-23 22:24:26.701][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:26.702][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:24:26.703][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:26.705][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:24:26.706][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:26.707][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:24:26.708][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-23 22:24:26.709][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:24:26.710][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:26.712][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-23 22:24:26.713][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:24:26.714][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:26.715][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:26.716][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-23 22:24:26.716][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-23 22:24:26.716][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-23 22:24:26.716][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-23 22:24:26.716][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-23 22:24:26.718][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:24:26.719][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:26.720][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:26.721][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:24:26.722][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:26.723][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:26.724][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:24:26.725][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:26.727][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:24:26.728][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:24:26.729][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:26.730][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:26.731][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-23 22:24:26.733][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:26.734][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-23 22:24:26.736][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:26.737][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:24:26.738][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:26.739][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:24:26.740][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:26.741][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:24:26.743][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-23 22:24:26.744][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:24:26.745][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:26.746][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-23 22:24:26.747][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:24:26.749][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:26.750][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:26.751][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:26.752][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:24:26.753][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:26.754][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:26.755][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:24:26.757][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:26.758][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:26.759][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:24:26.760][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:26.761][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:24:26.762][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:24:26.763][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:26.764][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:26.766][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-23 22:24:26.768][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:26.769][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-23 22:24:26.770][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:26.771][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:24:26.772][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:26.774][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:24:26.775][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:26.776][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:24:26.777][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-23 22:24:26.778][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:24:26.780][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:26.781][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-23 22:24:26.782][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:24:26.783][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:26.784][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:26.785][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:26.787][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:24:26.788][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:26.789][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:26.790][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:24:26.791][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:26.792][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:26.793][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:24:26.794][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:26.796][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:24:26.797][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:24:26.798][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:26.799][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:26.802][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-23 22:24:26.803][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:26.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:26.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:26.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:26.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.816][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:26.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:26.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:26.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:26.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:26.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:26.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:26.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:26.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:26.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:26.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.843][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:26.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:26.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.848][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:26.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:26.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.854][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:26.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:26.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:26.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:26.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.865][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:26.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:26.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:26.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:26.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.881][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:26.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:26.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.887][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:26.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:26.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:26.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:26.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:26.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:26.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:26.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:26.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:26.903][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-23 22:24:26.907][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-23 22:24:26.908][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-23 22:24:26.910][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-23 22:24:26.912][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-23 22:24:26.913][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-23 22:24:26.915][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-23 22:24:26.916][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-23 22:24:26.918][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-23 22:24:26.919][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-23 22:24:26.921][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-23 22:24:26.922][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-23 22:24:26.924][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-23 22:24:26.925][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-23 22:24:26.927][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-23 22:24:26.928][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-23 22:24:26.930][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-23 22:24:26.931][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-23 22:24:26.933][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-23 22:24:26.935][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-23 22:24:26.936][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-23 22:24:26.938][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-23 22:24:26.939][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-23 22:24:26.941][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-23 22:24:26.942][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-23 22:24:26.944][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-23 22:24:26.945][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-23 22:24:26.947][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-23 22:24:26.948][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-23 22:24:26.950][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-23 22:24:26.951][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-23 22:24:26.953][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-23 22:24:26.955][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-23 22:24:26.956][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-23 22:24:26.958][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-23 22:24:26.959][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-23 22:24:26.961][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-23 22:24:26.962][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-23 22:24:26.964][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-23 22:24:26.965][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-23 22:24:26.967][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-23 22:24:26.968][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-23 22:24:26.970][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-23 22:24:26.971][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-23 22:24:26.973][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-23 22:24:26.975][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-23 22:24:26.976][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-23 22:24:26.978][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-23 22:24:26.979][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-23 22:24:26.981][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-23 22:24:26.982][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-23 22:24:26.984][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-23 22:24:26.985][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-23 22:24:26.987][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-23 22:24:26.988][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-23 22:24:26.990][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-23 22:24:26.991][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-23 22:24:26.993][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-23 22:24:26.994][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-23 22:24:26.996][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-23 22:24:26.998][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-23 22:24:26.999][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-23 22:24:27.001][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-23 22:24:27.003][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-23 22:24:27.004][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-23 22:24:27.006][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-23 22:24:27.007][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-23 22:24:27.009][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-23 22:24:27.010][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-23 22:24:27.012][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-23 22:24:27.014][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-23 22:24:27.015][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-23 22:24:27.017][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-23 22:24:27.018][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-23 22:24:27.020][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-23 22:24:27.022][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-23 22:24:27.023][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-23 22:24:27.025][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-23 22:24:27.026][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-23 22:24:27.028][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-23 22:24:27.030][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-23 22:24:27.031][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-23 22:24:27.033][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-23 22:24:27.067][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-23 22:24:27.069][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-07-23 22:24:27.072][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-23 22:24:27.073][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:27.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:27.075][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:27.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:27.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:27.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:27.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:27.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:27.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:27.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:27.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:27.088][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:27.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:27.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:27.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:27.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:27.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:27.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:27.125][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:27.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:27.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:27.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:27.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:27.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:27.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:27.132][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:27.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:27.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:27.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:27.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:27.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:27.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:27.140][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:27.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:27.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:27.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:27.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:27.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:27.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:27.147][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:27.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:27.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:27.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:27.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:27.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:27.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:27.155][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:27.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:27.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:27.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:27.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:27.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:27.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:27.163][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:27.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:27.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:27.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:27.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:27.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:27.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:27.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:27.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:27.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:27.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:27.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:27.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:27.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:27.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:27.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:27.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:27.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:27.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:27.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:27.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:27.185][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:27.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:27.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:27.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:27.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:27.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:27.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:27.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:27.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:27.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:27.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:27.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:27.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:27.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:27.200][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:27.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:27.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:27.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:27.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:27.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:27.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:27.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:27.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:27.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:27.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:27.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:27.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:27.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:27.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:27.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:27.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:27.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:27.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:27.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:27.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:27.223][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:27.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:27.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:27.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:27.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:27.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:27.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:27.231][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:27.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:27.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:27.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:27.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:27.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:27.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:27.247][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-07-23 22:24:27.261][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-07-23 22:24:27.263][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:27.265][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-23 22:24:27.266][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:27.267][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:24:27.268][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:27.269][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-07-23 22:24:27.271][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:27.272][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:24:27.273][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-23 22:24:27.274][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:24:27.275][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:27.277][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-07-23 22:24:27.278][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:24:27.279][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-07-23 22:24:27.279][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-07-23 22:24:27.279][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-07-23 22:24:27.279][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-07-23 22:24:27.279][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-07-23 22:24:27.279][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-07-23 22:24:27.279][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-07-23 22:24:27.279][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-07-23 22:24:27.279][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-07-23 22:24:27.279][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-07-23 22:24:27.279][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-07-23 22:24:27.279][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-07-23 22:24:27.279][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-07-23 22:24:27.279][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-07-23 22:24:27.279][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-07-23 22:24:27.279][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-07-23 22:24:27.279][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-07-23 22:24:27.279][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-07-23 22:24:27.281][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:27.282][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-23 22:24:27.282][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-07-23 22:24:27.282][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-07-23 22:24:27.283][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-23 22:24:27.284][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:27.286][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:27.287][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:24:27.288][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:27.289][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:27.290][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:24:27.291][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-23 22:24:27.291][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-07-23 22:24:27.293][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:24:27.294][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:24:27.295][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:27.296][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:27.302][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-07-23 22:24:27.304][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-23 22:24:27.305][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-23 22:24:27.307][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-23 22:24:27.309][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-23 22:24:27.331][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-07-23 22:24:27.332][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-07-23 22:24:27.342][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-23 22:24:27.346][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-23 22:24:27.350][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-23 22:24:27.351][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-23 22:24:27.353][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-07-23 22:24:27.354][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-07-23 22:24:27.355][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-23 22:24:27.355][self$setPropertyValue] Setting property "urls" to "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-07-23 22:24:27.357][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:24:27.358][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:24:27.359][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-07-23 22:24:27.360][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-07-23 22:24:27.361][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-23 22:24:27.377][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-23 22:24:27.379][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-23 22:24:27.380][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-23 22:24:27.382][private$addConnectorRules] Create new rule for URL "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-23 22:24:27.384][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-23 22:24:27.385][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-07-23 22:24:27.394][biodb::testThat]
biodb.INFO [2024-07-23 22:24:27.396][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-07-23 22:24:27.397][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:24:27.398][biodb::testThat]
biodb.TRACE[2024-07-23 22:24:27.425][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2024-07-23 22:24:27.427][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:24:27.430][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-23 22:24:27.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:24:27.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:27.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:27.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:27.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:27.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:27.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:24:27.602][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:27.604][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:27.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.607][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:27.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:27.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.630][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:27.633][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:27.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.637][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.680][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:27.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:27.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.690][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:27.692][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:27.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.696][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.699][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:27.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:27.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.708][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:27.710][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:27.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.714][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.716][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:27.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:27.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.730][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:27.732][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:27.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.734][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:27.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:27.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.742][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:27.743][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:27.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.746][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:27.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:27.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.754][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:27.755][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:27.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.758][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.760][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:27.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:27.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.765][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:27.767][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:27.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.769][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.771][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:27.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:27.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.777][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:27.778][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:27.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.781][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:27.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:27.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.788][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:27.789][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:27.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.792][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:27.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:27.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.799][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:27.801][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:27.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.803][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.805][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:27.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:27.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.810][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:27.812][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:27.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.814][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:27.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:27.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.821][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:27.823][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:27.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.825][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:27.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:27.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.833][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:27.834][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:27.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.837][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:27.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:27.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.844][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:27.846][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:27.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.848][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.850][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:27.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:27.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.856][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:27.857][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:27.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.860][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.861][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:27.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:27.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.867][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:27.868][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:27.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.871][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.873][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:27.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:27.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.878][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-23 22:24:27.880][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:27.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.882][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.884][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-23 22:24:27.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:27.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:27.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:27.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:27.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:27.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:27.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:27.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.943][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:27.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:27.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.948][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:27.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:27.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.954][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:27.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:27.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.960][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:27.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:27.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.965][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:27.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:27.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.970][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:27.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:27.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:27.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:27.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:27.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:27.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:27.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:27.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:27.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:27.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:27.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:27.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:27.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:28.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:28.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:28.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:28.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:28.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:28.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:28.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:28.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:28.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:28.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:28.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:28.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:28.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:28.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:28.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:28.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:28.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:28.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:28.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.050][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:28.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:28.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.055][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:28.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:28.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.061][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:28.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:28.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.066][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:28.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:28.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.072][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:28.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:28.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.077][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:28.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:28.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.082][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:28.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:28.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:28.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:28.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.098][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:28.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:28.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.104][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:28.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:28.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.111][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:28.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:28.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:28.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:28.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:28.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:28.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.131][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:28.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:28.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.136][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:28.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:28.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.141][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:28.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:28.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:28.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:28.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:28.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:28.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:28.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:28.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.160][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:28.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:28.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.165][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:28.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:28.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.170][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:28.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:28.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:28.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:28.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:28.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:28.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.185][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:28.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:28.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.190][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:28.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:28.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.195][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:28.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:28.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.199][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:28.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:28.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.204][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:28.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:28.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.209][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:28.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:28.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.214][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:28.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:28.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.219][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-23 22:24:28.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:28.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:28.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:28.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:28.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:28.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:28.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:28.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.239][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-23 22:24:28.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:28.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.258][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:28.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:28.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.268][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:28.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:28.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.273][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:28.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:28.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.278][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:28.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:28.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.282][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:28.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:28.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.287][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:28.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:28.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.292][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:28.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:28.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:28.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:28.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.302][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:28.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:28.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:28.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:28.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:28.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:28.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:28.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:28.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:28.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:28.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:28.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:28.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:28.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:28.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:24:28.336][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2024-07-23 22:24:28.339][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-23 22:24:28.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-23 22:24:28.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.344][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-23 22:24:28.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-23 22:24:28.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.349][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-23 22:24:28.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-23 22:24:28.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.354][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-23 22:24:28.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-23 22:24:28.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:28.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:28.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.531][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:28.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:28.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:28.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:28.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:28.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:28.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:28.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:28.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:28.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:28.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:28.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:28.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:28.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:28.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.572][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:28.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:28.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.578][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:28.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:28.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.582][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:28.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:28.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:28.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:28.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:28.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:28.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:28.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:28.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.631][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:28.632][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:28.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.634][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:28.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:28.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.656][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:28.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:28.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.661][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:28.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:28.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.666][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:28.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:28.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.671][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:28.672][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:28.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.674][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.675][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:28.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:28.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:28.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:28.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:28.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:28.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:28.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:28.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.709][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:28.711][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:28.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.713][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:28.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:28.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.729][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:28.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:28.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.734][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:28.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:28.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:28.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:28.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.743][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:28.745][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:28.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.747][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:28.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:28.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:28.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:28.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:28.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:28.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:28.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:28.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.800][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:28.801][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:28.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.804][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:28.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:28.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.834][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:28.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:28.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.839][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:28.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:28.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.844][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:28.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:28.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.849][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:28.851][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:28.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.853][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.854][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:28.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:28.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:28.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:28.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.879][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:28.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:28.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.884][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:28.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:28.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.888][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:28.890][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:28.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.892][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:28.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:28.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.908][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:28.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:28.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.913][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:28.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:28.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.917][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:28.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:28.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.922][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:28.924][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:28.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.926][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.927][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:28.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:28.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.942][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:28.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:28.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.947][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:28.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:28.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.951][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:28.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:28.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.956][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:28.958][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:28.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.960][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.961][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:28.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:28.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.980][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:28.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:28.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.985][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:28.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:28.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.990][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:28.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:28.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.994][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:28.996][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:28.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:28.998][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:28.999][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:29.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:29.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:29.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:29.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:29.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:29.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:29.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:29.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.034][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:29.035][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:29.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.037][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:29.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:29.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:29.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:29.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:29.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:29.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:29.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:29.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.068][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:29.069][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:29.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.072][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:29.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:29.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:29.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:29.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:29.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:29.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:29.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:29.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.110][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:29.112][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:29.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.114][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:29.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:29.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.134][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:29.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:29.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:29.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:29.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:29.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:29.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.149][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:29.150][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:29.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.152][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:29.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:29.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.172][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:29.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:29.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.177][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:29.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:29.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.182][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:29.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:29.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.187][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:29.188][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:29.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.191][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.192][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:29.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:29.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:29.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:29.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:29.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:29.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:29.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:29.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.226][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:29.227][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:29.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.229][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:29.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:29.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:29.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:29.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:29.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:29.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:29.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:29.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.272][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:29.274][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:29.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.276][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.277][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:29.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:29.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.293][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:29.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:29.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.298][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:29.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:29.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.303][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:29.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:29.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.308][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:29.310][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:29.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.312][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.313][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:29.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:29.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.339][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:29.340][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:29.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.343][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.349][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:29.350][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:29.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.353][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.359][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:29.361][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:29.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.363][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.369][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:29.371][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:29.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.373][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.398][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:29.399][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:29.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.402][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.408][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:29.410][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:29.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.412][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.427][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:29.428][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:29.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.430][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.496][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:29.498][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:29.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.500][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.527][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:29.529][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:29.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.531][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.563][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:29.565][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:29.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.568][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.576][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:29.578][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:29.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.580][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.587][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:29.588][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:29.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.591][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.597][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:29.599][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:29.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.601][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.613][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:29.614][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:29.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.616][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.623][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:29.625][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:29.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.627][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.636][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:29.637][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:29.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.639][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.657][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:29.659][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:29.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.661][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:29.672][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:29.674][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:29.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:29.676][ef$get] fields variable is a list.
biodb.INFO [2024-07-23 22:24:29.694][biodb::testThat]
biodb.INFO [2024-07-23 22:24:29.696][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-07-23 22:24:29.697][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:24:29.698][biodb::testThat]
biodb.DEBUG[2024-07-23 22:24:29.711][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-07-23 22:24:29.717][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-23 22:24:29.957][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:29.960][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-23 22:24:29.962][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-07-23 22:24:29.964][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:24:29.979][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-07-23 22:24:29.981][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:24:30.008][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:24:30.010][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-23 22:24:30.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:24:30.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:30.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:30.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:30.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:30.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:30.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:24:30.037][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:30.038][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:30.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.040][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:30.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:30.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.047][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:30.048][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:30.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.051][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.052][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:30.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:30.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.057][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:30.059][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:30.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.061][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.063][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:30.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:30.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.068][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:30.069][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:30.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.071][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.073][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:30.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:30.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.078][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:30.080][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:30.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.082][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:30.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:30.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.089][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:30.090][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:30.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.092][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:30.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:30.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.099][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:30.100][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:30.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.103][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.104][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:30.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:30.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.109][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:30.111][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:30.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.113][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.115][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:30.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:30.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.120][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:30.121][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:30.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.124][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:30.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:30.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.130][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:30.132][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:30.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.134][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:30.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:30.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.141][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:30.142][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:30.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.144][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.146][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:30.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:30.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.151][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:30.152][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:30.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.155][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:30.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:30.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.161][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:30.163][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:30.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.165][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:30.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:30.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.172][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:30.173][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:30.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.175][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:30.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:30.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.188][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:30.191][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:30.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.193][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.195][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:30.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:30.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.200][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:30.201][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:30.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.203][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.205][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:30.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:30.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.210][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:30.211][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:30.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.214][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.215][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:30.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:30.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.220][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-23 22:24:30.222][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:30.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.224][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.226][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-23 22:24:30.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:30.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:30.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:30.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:30.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:30.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:30.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:30.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.246][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:30.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:30.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.251][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:30.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:30.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.256][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:30.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:30.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.261][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:30.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:30.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.266][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:30.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:30.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.271][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:30.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:30.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:30.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:30.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:30.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:30.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:30.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:30.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:30.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:30.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:30.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:30.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:30.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:30.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:30.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:30.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:30.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:30.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:30.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:30.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:30.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:30.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:30.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:30.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:30.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:30.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:30.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:30.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:30.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:30.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:30.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:30.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.350][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:30.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:30.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.359][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:30.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:30.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.364][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:30.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:30.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.369][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:30.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:30.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.374][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:30.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:30.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.379][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:30.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:30.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:30.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:30.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:30.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:30.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:30.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:30.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:30.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:30.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:30.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:30.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:30.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:30.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.414][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:30.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:30.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.419][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:30.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:30.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.424][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:30.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:30.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:30.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:30.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:30.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:30.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:30.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:30.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.444][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:30.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:30.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.449][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:30.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:30.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.454][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:30.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:30.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:30.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:30.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:30.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:30.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:30.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:30.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.473][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:30.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:30.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.478][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:30.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:30.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.483][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:30.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:30.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.488][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:30.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:30.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.493][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:30.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:30.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.498][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:30.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:30.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.503][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-23 22:24:30.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:30.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.508][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:30.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:30.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:30.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:30.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:30.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:30.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.523][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-23 22:24:30.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:30.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.536][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:30.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:30.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.544][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:30.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:30.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.552][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:30.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:30.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:30.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:30.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.567][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:30.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:30.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.575][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:30.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:30.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.580][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:30.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:30.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:30.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:30.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.590][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:30.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:30.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:30.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:30.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:30.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:30.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:30.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:30.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:30.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:30.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:30.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:30.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:30.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:30.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:24:30.626][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-07-23 22:24:30.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-07-23 22:24:30.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-07-23 22:24:30.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-07-23 22:24:30.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-07-23 22:24:30.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-07-23 22:24:30.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-07-23 22:24:30.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-23 22:24:30.704][biodb::testThat]
biodb.INFO [2024-07-23 22:24:30.706][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-07-23 22:24:30.707][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:24:30.708][biodb::testThat]
biodb.TRACE[2024-07-23 22:24:30.712][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:30.714][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:30.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.716][ef$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:24:30.718][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2024-07-23 22:24:30.770][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:30.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:30.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.776][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:30.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:30.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:30.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:30.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:24:30.793][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2024-07-23 22:24:30.795][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-07-23 22:24:30.796][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-07-23 22:24:30.797][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-07-23 22:24:30.799][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:30.801][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:30.803][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-23 22:24:30.805][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:30.806][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-23 22:24:30.807][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-23 22:24:30.809][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-23 22:24:30.810][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-23 22:24:30.812][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-23 22:24:30.813][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-23 22:24:30.814][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-23 22:24:30.816][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:30.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:30.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.821][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:30.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:30.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.826][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:30.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:30.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.831][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:30.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:30.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:24:30.836][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-23 22:24:30.837][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-23 22:24:30.838][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-07-23 22:24:30.874][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:30.876][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:30.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.878][ef$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:24:30.880][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2024-07-23 22:24:30.908][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:30.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:30.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.913][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:30.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:30.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:30.918][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:30.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:30.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:30.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:24:30.925][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2024-07-23 22:24:30.975][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-07-23 22:24:30.976][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-07-23 22:24:30.977][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-07-23 22:24:30.990][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:30.992][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:30.993][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-23 22:24:30.995][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:30.996][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-23 22:24:31.010][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-23 22:24:31.011][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-23 22:24:31.012][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-23 22:24:31.014][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-23 22:24:31.015][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-23 22:24:31.016][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-23 22:24:31.018][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:31.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:31.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:31.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:31.023][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:31.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:31.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:31.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:31.028][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:31.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:31.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:31.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:31.033][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:31.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:31.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:31.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:24:31.038][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-23 22:24:31.039][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-23 22:24:31.040][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-07-23 22:24:31.081][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:31.082][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:31.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:31.085][ef$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:24:31.087][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2024-07-23 22:24:31.178][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:31.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:31.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:31.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:31.184][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:31.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:31.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:31.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:31.189][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:31.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:31.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:31.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:24:31.197][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2024-07-23 22:24:31.198][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2024-07-23 22:24:31.199][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-07-23 22:24:31.201][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-07-23 22:24:31.203][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:31.210][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:31.212][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-23 22:24:31.213][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:31.215][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-23 22:24:31.216][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-23 22:24:31.218][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-23 22:24:31.219][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-23 22:24:31.220][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-23 22:24:31.222][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-23 22:24:31.223][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-23 22:24:31.225][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:31.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:31.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:31.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:31.230][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:31.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:31.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:31.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:31.235][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:31.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:31.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:31.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:31.240][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:31.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:31.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:31.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:24:31.245][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-23 22:24:31.246][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-23 22:24:31.247][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2024-07-23 22:24:31.303][biodb::testThat]
biodb.INFO [2024-07-23 22:24:31.304][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-07-23 22:24:31.306][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:24:31.307][biodb::testThat]
biodb.TRACE[2024-07-23 22:24:31.322][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:31.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:31.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:31.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:31.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:31.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:31.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:31.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:31.332][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:31.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:31.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:31.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:24:31.350][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-07-23 22:24:31.351][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-07-23 22:24:31.352][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-07-23 22:24:31.355][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:31.357][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:31.359][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-23 22:24:31.361][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:31.362][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-23 22:24:31.364][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-23 22:24:31.365][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-23 22:24:31.366][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-23 22:24:31.368][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-23 22:24:31.369][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-23 22:24:31.370][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-23 22:24:31.373][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:31.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:31.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:31.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:31.378][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:31.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:31.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:31.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:31.383][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:31.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:31.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:31.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:31.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:31.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:31.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:31.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:24:31.394][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-23 22:24:31.395][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2024-07-23 22:24:31.452][biodb::testThat]
biodb.INFO [2024-07-23 22:24:31.454][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-07-23 22:24:31.455][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:24:31.456][biodb::testThat]
biodb.TRACE[2024-07-23 22:24:31.486][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-23 22:24:31.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-23 22:24:31.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:31.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:31.491][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-23 22:24:31.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-23 22:24:31.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:31.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:31.496][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-23 22:24:31.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-23 22:24:31.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:31.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:31.501][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-23 22:24:31.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-23 22:24:31.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:31.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:31.541][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-23 22:24:31.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-23 22:24:31.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:31.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:31.546][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-23 22:24:31.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-23 22:24:31.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:31.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:31.551][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-23 22:24:31.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-23 22:24:31.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:31.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:31.556][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-23 22:24:31.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-23 22:24:31.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:31.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-23 22:24:31.578][biodb::testThat]
biodb.INFO [2024-07-23 22:24:31.579][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-07-23 22:24:31.581][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:24:31.582][biodb::testThat]
biodb.INFO [2024-07-23 22:24:31.603][biodb::testThat]
biodb.INFO [2024-07-23 22:24:31.604][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-07-23 22:24:31.605][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:24:31.607][biodb::testThat]
biodb.INFO [2024-07-23 22:24:31.624][biodb::testThat]
biodb.INFO [2024-07-23 22:24:31.625][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-07-23 22:24:31.626][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:24:31.627][biodb::testThat]
biodb.DEBUG[2024-07-23 22:24:31.637][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2024-07-23 22:24:32.439][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2024-07-23 22:24:34.946][biodb::testThat]
biodb.INFO [2024-07-23 22:24:34.947][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-07-23 22:24:34.948][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:24:34.950][biodb::testThat]
biodb.DEBUG[2024-07-23 22:24:35.135][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2024-07-23 22:24:35.738][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:35.740][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:35.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:35.742][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:35.743][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:35.744][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:35.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:35.747][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:35.748][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:35.749][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:35.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:35.752][ef$get] fields variable is a list.
biodb.INFO [2024-07-23 22:24:35.754][biodb::testThat]
biodb.INFO [2024-07-23 22:24:35.755][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2024-07-23 22:24:35.756][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:24:35.757][biodb::testThat]
biodb.DEBUG[2024-07-23 22:24:35.760][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-07-23 22:24:35.799][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-23 22:24:35.801][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:35.803][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-23 22:24:35.854][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-07-23 22:24:35.856][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-23 22:24:35.857][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-23 22:24:35.858][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:24:35.860][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:35.862][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:24:35.864][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-23 22:24:35.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:24:35.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:35.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:35.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:35.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:35.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:35.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:24:35.901][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:35.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:35.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:35.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:35.907][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:35.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:35.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:35.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:35.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:35.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:35.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:35.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:35.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:35.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:35.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:35.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:35.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:35.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:35.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:35.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:35.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:35.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:35.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:35.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:35.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:35.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:35.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:35.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:35.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:35.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:35.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:35.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:24:35.943][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-07-23 22:24:35.945][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-07-23 22:24:35.974][biodb::testThat]
biodb.INFO [2024-07-23 22:24:35.976][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-07-23 22:24:35.977][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:24:35.978][biodb::testThat]
biodb.DEBUG[2024-07-23 22:24:35.988][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2024-07-23 22:24:35.990][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-07-23 22:24:35.991][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-23 22:24:35.993][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:35.995][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-23 22:24:35.997][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2024-07-23 22:24:35.999][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-23 22:24:36.000][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-23 22:24:36.002][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:24:36.004][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:36.005][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:24:36.006][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-23 22:24:36.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:24:36.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:36.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:36.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:36.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:36.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:24:36.038][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:36.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:36.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:36.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:36.043][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:36.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:36.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:36.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:36.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:36.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:36.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:36.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:36.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:36.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:36.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:36.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:36.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:36.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:36.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:36.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:36.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:36.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:36.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:36.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:36.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:36.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:36.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:36.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:36.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:36.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:36.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:36.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:24:36.080][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-07-23 22:24:36.082][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-07-23 22:24:36.083][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2024-07-23 22:24:36.124][biodb::testThat]
biodb.INFO [2024-07-23 22:24:36.126][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2024-07-23 22:24:36.127][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:24:36.128][biodb::testThat]
biodb.INFO [2024-07-23 22:24:36.162][biodb::testThat]
biodb.INFO [2024-07-23 22:24:36.163][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2024-07-23 22:24:36.165][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:24:36.167][biodb::testThat]
biodb.DEBUG[2024-07-23 22:24:36.170][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:36.172][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:36.174][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-23 22:24:36.176][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:36.177][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-23 22:24:36.179][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-23 22:24:36.180][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-23 22:24:36.182][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-23 22:24:36.183][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2024-07-23 22:24:36.218][biodb::testThat]
biodb.INFO [2024-07-23 22:24:36.220][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2024-07-23 22:24:36.221][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:24:36.222][biodb::testThat]
biodb.DEBUG[2024-07-23 22:24:36.225][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:36.227][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:36.229][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-23 22:24:36.231][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:36.232][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-23 22:24:36.234][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-23 22:24:36.241][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-23 22:24:36.243][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-23 22:24:36.244][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2024-07-23 22:24:36.305][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:36.307][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:36.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:36.311][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:36.314][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:36.316][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:36.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:36.320][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:36.322][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:36.324][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:36.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:36.328][ef$get] fields variable is a list.
biodb.INFO [2024-07-23 22:24:36.330][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-23 22:24:36.332][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-07-23 22:24:36.346][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-07-23 22:24:36.348][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-23 22:24:36.350][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:36.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:36.354][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:36.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:36.357][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-23 22:24:36.366][biodb::testContext]
biodb.INFO [2024-07-23 22:24:36.368][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-23 22:24:36.370][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2024-07-23 22:24:36.372][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-23 22:24:36.374][biodb::testContext]
biodb.INFO [2024-07-23 22:24:36.381][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-07-23 22:24:36.384][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-23 22:24:36.390][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-23 22:24:36.391][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-23 22:24:36.392][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-23 22:24:36.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.397][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-23 22:24:36.399][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-23 22:24:36.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.404][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-23 22:24:36.405][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-23 22:24:36.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.410][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-23 22:24:36.411][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-23 22:24:36.413][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-23 22:24:36.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.418][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-23 22:24:36.419][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-23 22:24:36.420][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-23 22:24:36.421][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.427][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-23 22:24:36.429][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-23 22:24:36.430][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.433][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-23 22:24:36.435][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-23 22:24:36.437][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-23 22:24:36.438][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.442][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-23 22:24:36.443][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-23 22:24:36.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.448][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-23 22:24:36.449][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-23 22:24:36.451][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-23 22:24:36.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.456][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-23 22:24:36.457][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-23 22:24:36.458][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-23 22:24:36.459][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-23 22:24:36.466][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-23 22:24:36.468][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-23 22:24:36.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.473][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-23 22:24:36.475][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-23 22:24:36.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.479][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-23 22:24:36.481][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-23 22:24:36.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.486][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-23 22:24:36.487][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-23 22:24:36.489][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.492][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-23 22:24:36.493][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-23 22:24:36.495][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.498][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-23 22:24:36.499][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-23 22:24:36.501][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.504][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-23 22:24:36.505][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-23 22:24:36.509][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-23 22:24:36.510][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.514][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-23 22:24:36.515][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-23 22:24:36.517][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-23 22:24:36.518][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.521][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-23 22:24:36.523][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:36.525][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-23 22:24:36.526][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:36.527][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:24:36.529][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:36.530][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:24:36.531][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:36.532][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:24:36.534][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-23 22:24:36.535][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:24:36.536][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:36.537][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-23 22:24:36.539][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:24:36.540][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:36.541][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:36.543][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-23 22:24:36.543][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-23 22:24:36.543][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-23 22:24:36.543][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-23 22:24:36.543][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-23 22:24:36.544][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:24:36.545][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:36.546][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:36.548][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:24:36.549][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:36.550][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:36.551][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:24:36.552][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:36.554][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:24:36.555][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:24:36.556][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:36.557][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:36.559][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-23 22:24:36.561][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:36.562][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-23 22:24:36.564][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:36.565][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:24:36.567][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:36.568][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:24:36.569][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:36.571][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:24:36.572][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-23 22:24:36.573][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:24:36.574][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:36.576][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-23 22:24:36.577][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:24:36.578][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:36.579][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:36.581][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-23 22:24:36.581][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-23 22:24:36.581][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-23 22:24:36.581][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-23 22:24:36.581][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-23 22:24:36.582][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:24:36.583][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:36.584][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:36.586][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:24:36.587][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:36.588][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:36.589][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:24:36.591][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:36.592][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:24:36.593][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:24:36.594][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:36.596][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:36.597][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-23 22:24:36.599][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:36.600][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-23 22:24:36.607][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:36.608][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:24:36.610][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:36.611][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:24:36.613][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:36.614][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:24:36.615][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-23 22:24:36.616][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:24:36.618][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:36.619][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-23 22:24:36.620][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:24:36.622][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:36.623][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:36.624][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:36.625][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:24:36.627][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:36.628][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:36.629][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:24:36.630][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:36.632][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:36.633][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:24:36.634][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:36.635][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:24:36.637][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:24:36.638][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:36.639][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:36.641][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-23 22:24:36.643][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:36.644][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-23 22:24:36.645][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:36.646][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:24:36.648][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:36.649][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:24:36.650][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:36.652][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:24:36.653][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-23 22:24:36.654][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:24:36.655][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:36.657][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-23 22:24:36.658][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:24:36.659][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:36.660][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:36.662][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:36.663][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:24:36.664][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:36.665][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:36.667][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:24:36.668][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:36.669][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:36.670][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:24:36.671][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:36.673][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:24:36.674][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:24:36.675][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:36.676][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:36.678][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-23 22:24:36.679][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:36.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:36.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.687][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:36.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:36.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:36.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:36.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.699][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:36.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:36.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:36.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:36.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.711][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:36.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:36.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.717][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:36.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:36.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.723][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:36.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:36.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.729][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:36.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:36.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.734][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:36.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:36.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:36.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:36.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:36.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:36.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:36.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:36.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.764][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:36.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:36.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.770][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:36.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:36.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.776][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:36.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:36.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:36.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:36.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.788][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-23 22:24:36.789][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-23 22:24:36.791][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-23 22:24:36.793][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-23 22:24:36.794][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-23 22:24:36.796][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-23 22:24:36.798][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-23 22:24:36.800][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-23 22:24:36.801][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-23 22:24:36.803][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-23 22:24:36.805][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-23 22:24:36.806][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-23 22:24:36.808][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-23 22:24:36.810][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-23 22:24:36.811][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-23 22:24:36.813][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-23 22:24:36.815][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-23 22:24:36.816][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-23 22:24:36.818][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-23 22:24:36.820][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-23 22:24:36.821][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-23 22:24:36.823][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-23 22:24:36.825][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-23 22:24:36.826][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-23 22:24:36.828][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-23 22:24:36.830][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-23 22:24:36.832][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-23 22:24:36.834][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-23 22:24:36.835][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-23 22:24:36.837][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-23 22:24:36.839][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-23 22:24:36.841][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-23 22:24:36.842][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-23 22:24:36.844][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-23 22:24:36.847][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-23 22:24:36.849][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-23 22:24:36.853][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-23 22:24:36.854][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-23 22:24:36.856][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-23 22:24:36.858][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-23 22:24:36.860][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-23 22:24:36.861][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-23 22:24:36.863][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-23 22:24:36.865][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-23 22:24:36.866][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-23 22:24:36.868][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-23 22:24:36.870][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-23 22:24:36.871][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-23 22:24:36.879][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-23 22:24:36.881][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-23 22:24:36.882][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-23 22:24:36.884][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-23 22:24:36.886][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-23 22:24:36.887][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-23 22:24:36.889][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-23 22:24:36.890][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-23 22:24:36.892][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-23 22:24:36.894][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-23 22:24:36.895][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-23 22:24:36.897][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-23 22:24:36.898][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-23 22:24:36.900][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-23 22:24:36.902][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-23 22:24:36.903][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-23 22:24:36.905][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-23 22:24:36.906][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-23 22:24:36.908][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-23 22:24:36.910][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-23 22:24:36.911][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-23 22:24:36.913][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-23 22:24:36.915][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-23 22:24:36.916][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-23 22:24:36.918][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-23 22:24:36.919][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-23 22:24:36.921][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-23 22:24:36.923][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-23 22:24:36.924][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-23 22:24:36.926][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-23 22:24:36.928][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-23 22:24:36.929][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-23 22:24:36.931][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-23 22:24:36.932][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-23 22:24:36.934][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-23 22:24:36.936][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-23 22:24:36.938][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-07-23 22:24:36.939][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-23 22:24:36.940][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:36.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:36.943][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.945][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:36.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:36.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:36.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:36.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.953][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:36.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:36.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:36.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:36.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:36.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:36.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:36.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:36.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:36.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:36.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:36.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:36.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.976][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:36.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:36.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:36.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:36.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.984][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:36.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:36.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:36.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:36.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:36.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:36.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:36.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:36.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:36.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:36.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:36.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:37.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:37.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:37.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:37.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:37.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:37.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:37.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:37.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:37.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:37.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:37.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:37.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:37.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:37.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:37.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:37.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:37.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:37.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:37.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:37.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:37.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:37.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:37.030][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:37.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:37.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:37.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:37.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:37.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:37.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:37.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:37.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:37.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:37.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:37.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:37.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:37.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:37.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:37.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:37.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:37.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:37.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:37.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:37.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:37.054][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:37.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:37.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:37.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:37.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:37.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:37.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:37.061][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:37.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:37.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:37.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:37.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:37.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:37.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:37.069][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:37.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:37.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:37.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:37.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:37.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:37.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:37.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:37.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:37.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:37.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:37.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:37.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:37.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:37.087][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-07-23 22:24:37.089][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-07-23 22:24:37.091][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:37.092][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-23 22:24:37.093][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:37.095][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:24:37.096][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:37.097][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-07-23 22:24:37.098][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:37.100][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:24:37.101][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-23 22:24:37.102][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:24:37.103][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:37.105][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-07-23 22:24:37.106][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:24:37.107][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-07-23 22:24:37.107][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-07-23 22:24:37.107][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-07-23 22:24:37.107][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-07-23 22:24:37.107][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-07-23 22:24:37.107][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-07-23 22:24:37.107][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-07-23 22:24:37.107][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-07-23 22:24:37.107][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-07-23 22:24:37.107][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-07-23 22:24:37.107][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-07-23 22:24:37.107][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-07-23 22:24:37.107][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-07-23 22:24:37.107][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-07-23 22:24:37.107][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-07-23 22:24:37.107][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-07-23 22:24:37.107][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-07-23 22:24:37.107][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-07-23 22:24:37.109][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:37.110][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-23 22:24:37.110][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-07-23 22:24:37.110][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-07-23 22:24:37.111][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-23 22:24:37.112][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:37.113][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:37.115][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:24:37.116][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:37.117][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:37.118][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:24:37.119][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-23 22:24:37.119][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-07-23 22:24:37.121][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:24:37.122][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:24:37.123][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:37.124][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:37.126][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-07-23 22:24:37.127][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-23 22:24:37.129][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-23 22:24:37.131][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-23 22:24:37.139][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-23 22:24:37.142][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-07-23 22:24:37.143][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-07-23 22:24:37.145][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-23 22:24:37.147][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-23 22:24:37.148][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-23 22:24:37.149][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-23 22:24:37.151][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-07-23 22:24:37.152][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-07-23 22:24:37.154][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-23 22:24:37.154][self$setPropertyValue] Setting property "urls" to "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-07-23 22:24:37.155][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:24:37.156][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:24:37.157][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-07-23 22:24:37.158][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-07-23 22:24:37.160][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-23 22:24:37.162][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-23 22:24:37.163][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-23 22:24:37.165][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-23 22:24:37.166][private$addConnectorRules] Create new rule for URL "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-23 22:24:37.168][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-23 22:24:37.169][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-07-23 22:24:37.171][biodb::testThat]
biodb.INFO [2024-07-23 22:24:37.172][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2024-07-23 22:24:37.174][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:24:37.175][biodb::testThat]
biodb.DEBUG[2024-07-23 22:24:37.180][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:37.182][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:37.184][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-23 22:24:37.186][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:37.187][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-23 22:24:37.189][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-23 22:24:37.190][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-23 22:24:37.191][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-23 22:24:37.193][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-23 22:24:37.196][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-07-23 22:24:37.208][biodb::testThat]
biodb.INFO [2024-07-23 22:24:37.210][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2024-07-23 22:24:37.211][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:24:37.212][biodb::testThat]
biodb.DEBUG[2024-07-23 22:24:37.214][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-07-23 22:24:37.216][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-23 22:24:37.218][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:37.220][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-23 22:24:37.222][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-07-23 22:24:37.224][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:24:37.237][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-07-23 22:24:37.239][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:24:37.240][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:24:37.242][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-23 22:24:37.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:24:37.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:37.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:37.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:37.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:37.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:37.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:24:37.266][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:37.268][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:37.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.270][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:37.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:37.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.277][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:37.278][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:37.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.281][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.282][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:37.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:37.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.287][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:37.289][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:37.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.291][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.292][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:37.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:37.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.303][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:37.305][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:37.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.307][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.309][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:37.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:37.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.314][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:37.315][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:37.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.318][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:37.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:37.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.325][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:37.326][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:37.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.328][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:37.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:37.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.335][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:37.336][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:37.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.339][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.340][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:37.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:37.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.346][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:37.347][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:37.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.349][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.351][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:37.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:37.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.356][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:37.357][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:37.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.360][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.361][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:37.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:37.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.366][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:37.368][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:37.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.370][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:37.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:37.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.378][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:37.380][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:37.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.382][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.384][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:37.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:37.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.389][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:37.390][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:37.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.392][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:37.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:37.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.399][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:37.400][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:37.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.403][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:37.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:37.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.409][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:37.411][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:37.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.413][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:37.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:37.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.420][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:37.421][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:37.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.423][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.425][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:37.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:37.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.430][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:37.431][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:37.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.439][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.441][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:37.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:37.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.446][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:37.447][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:37.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.449][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:37.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:37.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.456][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-23 22:24:37.458][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:37.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.460][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.462][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-23 22:24:37.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:37.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:37.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:37.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:37.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:37.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:37.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:37.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.482][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:37.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:37.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.487][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:37.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:37.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.492][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:37.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:37.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.497][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:37.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:37.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.502][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:37.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:37.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.507][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:37.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:37.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:37.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:37.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:37.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:37.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:37.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:37.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:37.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:37.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:37.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:37.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:37.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:37.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:37.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:37.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:37.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:37.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:37.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:37.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:37.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:37.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:37.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:37.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:37.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:37.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:37.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:37.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:37.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:37.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:37.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:37.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.592][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:37.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:37.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.597][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:37.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:37.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.602][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:37.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:37.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.607][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:37.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:37.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.612][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:37.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:37.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.617][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:37.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:37.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:37.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:37.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:37.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:37.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:37.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:37.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:37.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:37.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:37.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:37.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:37.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:37.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.653][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:37.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:37.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.658][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:37.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:37.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.663][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:37.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:37.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:37.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:37.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:37.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:37.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:37.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:37.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.683][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:37.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:37.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.687][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:37.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:37.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:37.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:37.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:37.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:37.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.709][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:37.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:37.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:37.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:37.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.718][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:37.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:37.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.723][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:37.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:37.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.728][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:37.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:37.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.733][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:37.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:37.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.738][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:37.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:37.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.743][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:37.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:37.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.748][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-23 22:24:37.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:37.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.753][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:37.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:37.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:37.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:37.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:37.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:37.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.768][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-23 22:24:37.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:37.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.774][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:37.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:37.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.779][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:37.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:37.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.784][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:37.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:37.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.789][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:37.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:37.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:37.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:37.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.799][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:37.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:37.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.804][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:37.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:37.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:37.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:37.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.813][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:37.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:37.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:37.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:37.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:37.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:37.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:37.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:37.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:37.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:37.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:37.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:37.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:37.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:37.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:24:37.854][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-07-23 22:24:37.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:37.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:37.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:37.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:37.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:37.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:37.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:37.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:37.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-23 22:24:37.885][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-23 22:24:37.887][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-07-23 22:24:37.888][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-07-23 22:24:37.889][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-23 22:24:37.890][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:37.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:37.892][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:37.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:37.895][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:37.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-23 22:24:37.901][biodb::testContext]
biodb.INFO [2024-07-23 22:24:37.902][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-23 22:24:37.904][biodb::testContext] Test context - Test search of entries
biodb.INFO [2024-07-23 22:24:37.905][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-23 22:24:37.906][biodb::testContext]
biodb.INFO [2024-07-23 22:24:37.913][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-07-23 22:24:37.915][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-23 22:24:37.921][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-23 22:24:37.922][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-23 22:24:37.923][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-23 22:24:37.925][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:37.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:37.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:37.928][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-23 22:24:37.929][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-23 22:24:37.931][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:37.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:37.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:37.934][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-23 22:24:37.936][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-23 22:24:37.937][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:37.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:37.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:37.940][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-23 22:24:37.942][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-23 22:24:37.943][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-23 22:24:37.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:37.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:37.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:37.948][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-23 22:24:37.949][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-23 22:24:37.950][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-23 22:24:37.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:37.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:37.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:37.955][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-23 22:24:37.956][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-23 22:24:37.958][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:37.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:37.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:37.961][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-23 22:24:37.962][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-23 22:24:37.964][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-23 22:24:37.965][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:37.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:37.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:37.968][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-23 22:24:37.970][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-23 22:24:37.971][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:37.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:37.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:37.974][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-23 22:24:37.975][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-23 22:24:37.977][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-23 22:24:37.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:37.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:37.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:37.987][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-23 22:24:37.989][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-23 22:24:37.990][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-23 22:24:37.991][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-23 22:24:37.992][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-23 22:24:37.994][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-23 22:24:37.995][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:37.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:37.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:37.998][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-23 22:24:38.000][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-23 22:24:38.001][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.004][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-23 22:24:38.006][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-23 22:24:38.007][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.010][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-23 22:24:38.012][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-23 22:24:38.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.016][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-23 22:24:38.018][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-23 22:24:38.019][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.022][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-23 22:24:38.023][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-23 22:24:38.024][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.028][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-23 22:24:38.029][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-23 22:24:38.033][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-23 22:24:38.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.037][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-23 22:24:38.038][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-23 22:24:38.040][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-23 22:24:38.041][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.044][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-23 22:24:38.046][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:38.048][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-23 22:24:38.049][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:38.050][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:24:38.051][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:38.053][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:24:38.054][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:38.055][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:24:38.056][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-23 22:24:38.058][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:24:38.059][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:38.060][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-23 22:24:38.062][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:24:38.063][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:38.064][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:38.065][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-23 22:24:38.065][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-23 22:24:38.065][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-23 22:24:38.065][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-23 22:24:38.065][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-23 22:24:38.067][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:24:38.068][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:38.069][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:38.070][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:24:38.071][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:38.073][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:38.074][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:24:38.075][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:38.076][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:24:38.077][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:24:38.078][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:38.080][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:38.081][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-23 22:24:38.083][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:38.084][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-23 22:24:38.086][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:38.087][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:24:38.088][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:38.089][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:24:38.091][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:38.092][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:24:38.093][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-23 22:24:38.094][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:24:38.096][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:38.097][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-23 22:24:38.098][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:24:38.099][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:38.101][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:38.102][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-23 22:24:38.102][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-23 22:24:38.102][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-23 22:24:38.102][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-23 22:24:38.102][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-23 22:24:38.103][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:24:38.104][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:38.106][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:38.107][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:24:38.108][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:38.114][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:38.116][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:24:38.117][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:38.119][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:24:38.120][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:24:38.121][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:38.122][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:38.124][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-23 22:24:38.126][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:38.127][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-23 22:24:38.129][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:38.130][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:24:38.131][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:38.133][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:24:38.134][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:38.135][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:24:38.136][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-23 22:24:38.138][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:24:38.139][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:38.140][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-23 22:24:38.142][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:24:38.143][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:38.144][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:38.145][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:38.147][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:24:38.148][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:38.149][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:38.150][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:24:38.152][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:38.153][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:38.154][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:24:38.155][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:38.157][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:24:38.158][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:24:38.159][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:38.160][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:38.162][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-23 22:24:38.164][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:38.165][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-23 22:24:38.166][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:38.168][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:24:38.169][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:38.170][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:24:38.171][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:38.173][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:24:38.174][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-23 22:24:38.175][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:24:38.177][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:38.178][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-23 22:24:38.179][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:24:38.180][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:38.182][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:38.183][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:38.184][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:24:38.185][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:38.187][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:38.188][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:24:38.189][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:38.190][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:38.191][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:24:38.193][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:38.194][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:24:38.195][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:24:38.196][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:38.198][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:38.199][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-23 22:24:38.201][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.203][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.214][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.238][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.249][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.255][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.261][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.267][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.273][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.278][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.284][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.289][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.306][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-23 22:24:38.308][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-23 22:24:38.310][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-23 22:24:38.311][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-23 22:24:38.313][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-23 22:24:38.315][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-23 22:24:38.316][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-23 22:24:38.318][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-23 22:24:38.319][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-23 22:24:38.321][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-23 22:24:38.323][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-23 22:24:38.324][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-23 22:24:38.326][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-23 22:24:38.327][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-23 22:24:38.329][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-23 22:24:38.331][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-23 22:24:38.332][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-23 22:24:38.334][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-23 22:24:38.335][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-23 22:24:38.337][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-23 22:24:38.339][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-23 22:24:38.340][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-23 22:24:38.342][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-23 22:24:38.343][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-23 22:24:38.345][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-23 22:24:38.347][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-23 22:24:38.348][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-23 22:24:38.350][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-23 22:24:38.351][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-23 22:24:38.353][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-23 22:24:38.355][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-23 22:24:38.356][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-23 22:24:38.358][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-23 22:24:38.359][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-23 22:24:38.361][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-23 22:24:38.362][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-23 22:24:38.370][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-23 22:24:38.371][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-23 22:24:38.373][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-23 22:24:38.375][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-23 22:24:38.377][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-23 22:24:38.378][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-23 22:24:38.380][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-23 22:24:38.381][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-23 22:24:38.383][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-23 22:24:38.385][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-23 22:24:38.386][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-23 22:24:38.388][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-23 22:24:38.389][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-23 22:24:38.391][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-23 22:24:38.393][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-23 22:24:38.394][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-23 22:24:38.396][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-23 22:24:38.397][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-23 22:24:38.399][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-23 22:24:38.401][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-23 22:24:38.402][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-23 22:24:38.404][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-23 22:24:38.406][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-23 22:24:38.407][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-23 22:24:38.409][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-23 22:24:38.410][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-23 22:24:38.412][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-23 22:24:38.414][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-23 22:24:38.415][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-23 22:24:38.417][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-23 22:24:38.419][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-23 22:24:38.420][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-23 22:24:38.422][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-23 22:24:38.424][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-23 22:24:38.425][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-23 22:24:38.427][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-23 22:24:38.429][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-23 22:24:38.430][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-23 22:24:38.432][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-23 22:24:38.434][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-23 22:24:38.435][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-23 22:24:38.437][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-23 22:24:38.439][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-23 22:24:38.440][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-23 22:24:38.442][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-23 22:24:38.444][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-23 22:24:38.445][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-23 22:24:38.447][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-23 22:24:38.450][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-07-23 22:24:38.451][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-23 22:24:38.452][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.455][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.457][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:38.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:38.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.465][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:38.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:38.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.473][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:38.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:38.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:38.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:38.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.496][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:38.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:38.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.504][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:38.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:38.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.512][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:38.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:38.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.520][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:38.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:38.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:38.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:38.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.536][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:38.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:38.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:38.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:38.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.555][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:38.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:38.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:38.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:38.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:38.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:38.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:38.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:38.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:38.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:38.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.595][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:24:38.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:38.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:38.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:38.605][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-07-23 22:24:38.607][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-07-23 22:24:38.609][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:38.610][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-23 22:24:38.612][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:38.613][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:24:38.614][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:38.615][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-07-23 22:24:38.617][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:38.618][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:24:38.624][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-23 22:24:38.626][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:24:38.627][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:38.628][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-07-23 22:24:38.630][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:24:38.631][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-07-23 22:24:38.631][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-07-23 22:24:38.631][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-07-23 22:24:38.631][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-07-23 22:24:38.631][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-07-23 22:24:38.631][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-07-23 22:24:38.631][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-07-23 22:24:38.631][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-07-23 22:24:38.631][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-07-23 22:24:38.631][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-07-23 22:24:38.631][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-07-23 22:24:38.631][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-07-23 22:24:38.631][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-07-23 22:24:38.631][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-07-23 22:24:38.631][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-07-23 22:24:38.631][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-07-23 22:24:38.631][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-07-23 22:24:38.631][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-07-23 22:24:38.632][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-23 22:24:38.634][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-23 22:24:38.634][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-07-23 22:24:38.634][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-07-23 22:24:38.635][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-23 22:24:38.636][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:38.637][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:38.638][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:24:38.640][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:24:38.641][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:24:38.642][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:24:38.643][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-23 22:24:38.643][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-07-23 22:24:38.644][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:24:38.646][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:24:38.647][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-23 22:24:38.648][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:24:38.650][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-07-23 22:24:38.651][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-23 22:24:38.653][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-23 22:24:38.655][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-23 22:24:38.657][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-23 22:24:38.660][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-07-23 22:24:38.661][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-07-23 22:24:38.663][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-23 22:24:38.665][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-23 22:24:38.666][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-23 22:24:38.667][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-23 22:24:38.669][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-07-23 22:24:38.670][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-07-23 22:24:38.671][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-23 22:24:38.671][self$setPropertyValue] Setting property "urls" to "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-07-23 22:24:38.673][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:24:38.674][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:24:38.675][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-07-23 22:24:38.676][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-07-23 22:24:38.677][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-23 22:24:38.679][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-23 22:24:38.681][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-23 22:24:38.682][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-23 22:24:38.684][private$addConnectorRules] Create new rule for URL "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-23 22:24:38.685][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-23 22:24:38.686][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-07-23 22:24:38.688][biodb::testThat]
biodb.INFO [2024-07-23 22:24:38.690][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2024-07-23 22:24:38.691][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:24:38.692][biodb::testThat]
biodb.DEBUG[2024-07-23 22:24:38.694][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-07-23 22:24:38.696][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-07-23 22:24:38.697][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-07-23 22:24:38.701][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:38.703][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:38.705][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-23 22:24:38.707][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:38.708][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-23 22:24:38.710][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-23 22:24:38.711][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-23 22:24:38.712][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-23 22:24:38.713][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-23 22:24:38.715][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-23 22:24:38.716][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2024-07-23 22:24:38.718][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-07-23 22:24:38.719][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-23 22:24:38.721][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:38.723][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-23 22:24:38.725][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-07-23 22:24:38.727][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:24:38.731][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-07-23 22:24:38.732][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:24:38.733][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:24:38.735][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-23 22:24:38.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:24:38.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:38.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:38.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:38.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:38.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:38.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:24:38.764][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:38.766][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:38.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.768][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:38.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:38.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.775][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:38.776][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:38.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.779][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.780][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:38.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:38.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.785][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:38.787][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:38.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.789][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.791][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:38.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:38.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.796][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:38.797][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:38.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.799][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.801][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:38.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:38.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.806][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:38.807][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:38.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.810][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:38.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:38.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.817][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:38.818][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:38.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.820][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:38.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:38.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.827][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:38.828][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:38.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.830][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.832][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:38.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:38.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.837][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:38.838][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:38.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.841][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:38.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:38.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.847][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:38.849][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:38.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.851][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:38.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:38.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.858][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:38.859][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:38.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.862][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:38.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:38.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.869][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:38.870][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:38.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.872][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.874][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:38.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:38.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.879][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:38.880][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:38.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.883][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:38.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:38.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.902][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:38.904][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:38.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.909][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:38.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:38.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.919][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:38.920][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:38.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.922][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:38.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:38.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.929][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:38.930][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:38.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.933][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:38.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:38.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.939][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:38.941][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:38.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.943][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.945][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:38.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:38.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.950][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:38.951][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:38.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.953][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.955][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:38.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:38.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.960][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-23 22:24:38.962][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:38.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.964][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.966][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-23 22:24:38.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:38.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:38.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:38.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:38.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:38.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:38.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:38.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.986][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:38.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:38.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.991][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:38.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:38.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:38.996][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:38.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:38.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:38.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.001][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:39.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:39.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.006][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:39.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:39.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.011][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:39.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:39.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:39.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:39.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:39.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:39.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:39.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:39.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:39.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:39.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:39.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:39.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:39.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:39.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:39.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:39.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:39.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:39.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:39.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:39.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:39.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:39.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:39.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:39.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:39.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:39.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:39.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:39.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:39.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:39.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:39.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:39.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.097][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:39.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:39.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.102][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:39.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:39.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.107][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:39.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:39.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.112][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:39.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:39.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.117][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:39.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:39.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.122][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:39.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:39.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:39.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:39.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:39.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:39.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.137][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:39.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:39.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.147][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.157][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:39.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:39.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.162][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:39.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:39.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.167][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:39.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:39.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:39.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:39.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:39.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:39.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:39.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:39.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.194][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:39.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:39.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.199][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:39.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:39.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.204][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:39.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:39.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.209][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:39.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:39.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.214][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:39.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:39.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:39.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:39.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.224][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:39.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:39.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.230][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:39.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:39.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.234][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:39.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:39.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.239][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:39.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:39.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:39.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:39.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.249][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:39.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:39.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.254][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-23 22:24:39.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.274][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-23 22:24:39.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.280][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:39.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:39.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.285][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:39.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:39.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.290][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:39.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:39.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.295][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:39.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:39.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.300][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:39.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:39.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.311][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:39.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:39.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.319][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:39.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:39.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:39.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:39.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.332][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:39.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:39.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:39.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:39.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:39.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:39.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:39.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:39.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:39.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:39.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:39.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:39.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:39.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:39.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:24:39.367][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-07-23 22:24:39.368][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:39.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:39.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.373][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:39.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:39.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.378][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:39.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:39.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.383][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:39.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:39.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:24:39.388][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-23 22:24:39.389][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-23 22:24:39.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:24:39.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:39.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:39.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:39.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:39.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:39.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:39.405][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-07-23 22:24:39.406][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-23 22:24:39.408][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:39.410][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-23 22:24:39.413][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-07-23 22:24:39.414][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:24:39.417][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-07-23 22:24:39.418][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:24:39.420][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:24:39.421][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-23 22:24:39.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:24:39.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:39.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:39.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:39.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:39.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:39.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:24:39.445][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:39.446][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:39.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.449][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:39.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:39.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.461][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:39.463][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:39.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.466][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.468][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:39.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:39.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.473][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:39.474][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:39.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.477][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.478][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:39.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:39.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.483][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:39.485][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:39.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.487][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.489][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:39.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:39.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.494][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:39.495][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:39.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.497][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:39.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:39.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.504][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:39.505][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:39.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.508][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:39.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:39.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.514][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:39.516][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:39.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.518][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.520][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:39.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:39.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.525][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:39.526][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:39.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.528][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.530][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:39.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:39.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.535][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:39.536][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:39.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.539][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:39.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:39.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.545][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:39.547][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:39.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.549][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:39.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:39.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.556][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:39.557][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:39.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.559][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.561][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:39.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:39.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.566][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:39.567][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:39.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.569][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.571][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:39.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:39.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.576][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.577][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.580][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.586][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:39.593][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:39.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.595][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:39.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:39.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.603][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:39.605][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:39.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.607][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.608][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:39.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:39.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.614][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:39.615][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:39.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.617][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.619][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:39.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:39.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.624][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:39.625][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:39.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.628][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.629][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:39.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:39.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.634][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-23 22:24:39.636][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:39.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.638][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.640][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-23 22:24:39.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:39.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:39.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:39.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:39.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:39.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:39.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:39.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.660][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:39.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:39.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.665][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:39.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:39.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.670][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:24:39.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:24:39.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.675][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:39.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:39.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.681][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:39.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:39.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.686][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-23 22:24:39.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-23 22:24:39.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:39.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:39.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:39.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:39.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:24:39.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:24:39.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:39.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:39.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:39.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:39.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:39.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-23 22:24:39.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:39.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:39.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:39.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:39.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:39.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-23 22:24:39.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:39.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:39.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:39.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:39.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.753][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:39.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-23 22:24:39.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:39.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:39.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:39.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:39.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:39.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-23 22:24:39.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.773][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:39.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:39.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.778][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:39.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:39.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.783][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:39.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:39.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.788][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:39.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:39.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.793][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:39.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:39.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.798][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:24:39.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:24:39.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:39.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:39.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:39.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:39.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:24:39.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:24:39.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.840][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:39.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:39.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.845][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:39.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:39.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.849][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:39.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:24:39.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:39.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:39.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:39.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:39.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:39.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:24:39.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.876][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:39.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:39.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.881][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:39.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:39.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.886][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:39.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:39.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.891][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:39.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:39.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.896][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:39.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:39.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.901][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:39.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-23 22:24:39.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.906][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:39.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:39.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.911][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:39.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:39.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.915][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:39.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-23 22:24:39.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.920][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:39.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:39.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.925][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:39.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:39.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.930][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:24:39.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:24:39.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.935][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-23 22:24:39.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.955][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-23 22:24:39.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:24:39.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.960][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:39.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:39.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.965][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:39.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:39.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:39.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:39.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.975][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:39.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:39.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.980][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:24:39.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:24:39.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.985][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:39.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:39.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:39.990][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:39.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:39.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:39.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:40.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:40.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.006][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:40.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-23 22:24:40.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:40.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:40.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:40.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:40.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:40.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:40.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:40.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:40.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:40.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:40.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:24:40.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:24:40.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:24:40.041][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-07-23 22:24:40.042][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.047][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.052][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.057][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:24:40.062][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-23 22:24:40.063][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2024-07-23 22:24:40.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:24:40.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:40.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:40.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:40.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:40.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:40.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:40.083][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-07-23 22:24:40.084][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-07-23 22:24:40.085][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-07-23 22:24:40.088][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:40.089][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:40.091][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-23 22:24:40.093][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:40.094][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-23 22:24:40.096][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-23 22:24:40.097][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-23 22:24:40.098][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-23 22:24:40.100][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-23 22:24:40.101][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-23 22:24:40.102][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-23 22:24:40.104][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.109][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.114][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.119][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.124][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.134][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.140][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:24:40.145][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-23 22:24:40.146][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-23 22:24:40.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:24:40.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:40.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:40.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:40.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:40.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:40.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:24:40.172][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.177][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.182][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.187][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.192][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.197][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.202][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:24:40.207][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-07-23 22:24:40.208][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-23 22:24:40.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:24:40.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:40.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:40.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:40.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:40.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:40.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:24:40.233][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-07-23 22:24:40.234][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-07-23 22:24:40.236][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-07-23 22:24:40.238][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:40.240][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:40.242][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-23 22:24:40.244][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-23 22:24:40.245][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-23 22:24:40.247][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-23 22:24:40.248][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-23 22:24:40.250][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-23 22:24:40.251][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-23 22:24:40.253][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-23 22:24:40.254][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-23 22:24:40.256][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.261][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.266][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.272][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.277][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.288][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.294][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:24:40.299][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-07-23 22:24:40.300][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2024-07-23 22:24:40.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:24:40.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:40.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:40.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:40.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:40.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:40.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:24:40.322][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.327][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.333][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.338][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.343][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.348][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:24:40.354][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-23 22:24:40.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-23 22:24:40.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:24:40.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:24:40.359][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-23 22:24:40.360][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-23 22:24:40.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:24:40.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:40.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:40.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:40.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:40.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:40.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-23 22:24:40.384][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-23 22:24:40.386][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-07-23 22:24:40.387][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-07-23 22:24:40.388][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-23 22:24:40.389][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:24:40.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:24:40.392][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:24:40.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:24:40.394][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:24:40.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
  10.37    0.54   16.67

Example timings