Pierrick Roger
| Snapshot Date: 2024-05-30 18:57:37 -0400 (Thu, 30 May 2024) |
| git_url: https://git.bioconductor.org/packages/biodbHmdb |
| git_branch: devel |
| git_last_commit: c3d59a4 |
| git_last_commit_date: 2024-04-30 11:39:05 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-05-31 19:28:41 -0400 (Fri, 31 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4669 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" | 4404 |
| merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4431 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4384 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 199/2233 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbHmdb 1.11.0 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
|
To the developers/maintainers of the biodbHmdb package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbHmdb |
| Version: 1.11.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings biodbHmdb_1.11.0.tar.gz |
| StartedAt: 2024-05-31 01:52:17 -0400 (Fri, 31 May 2024) |
| EndedAt: 2024-05-31 01:53:07 -0400 (Fri, 31 May 2024) |
| EllapsedTime: 50.1 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: biodbHmdb.Rcheck |
| Warnings: 2 |
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###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings biodbHmdb_1.11.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.4.0 RC (2024-04-16 r86468)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.11.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... WARNING
Found the following significant warnings:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
See ‘/home/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
* checking installed package size ... NOTE
installed size is 7.5Mb
sub-directories of 1Mb or more:
libs 6.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 3 NOTEs
See
‘/home/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.
biodbHmdb.Rcheck/00install.out
##############################################################################
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###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘biodbHmdb’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor ‘EntryMaker::EntryMaker()’:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
23 | TagDetector accession_tag;
| ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
22 | bool closed;
| ^~~~~~
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
5 | EntryMaker::EntryMaker() :
| ^~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package ‘biodbHmdb’
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)
biodbHmdb.Rcheck/tests/testthat.Rout
R version 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2024-05-31 01:52:50.965][biodb::testContext]
biodb.INFO [2024-05-31 01:52:50.968][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-31 01:52:50.969][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2024-05-31 01:52:50.969][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-31 01:52:50.970][biodb::testContext]
biodb.INFO [2024-05-31 01:52:50.972][biodb::testThat]
biodb.INFO [2024-05-31 01:52:50.973][biodb::testThat] Running test function test_extractXmlEntries (" extractXmlEntries() works fine. ").
biodb.INFO [2024-05-31 01:52:50.974][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-31 01:52:50.975][biodb::testThat]
biodb.INFO [2024-05-31 01:52:51.077][biodb::testContext]
biodb.INFO [2024-05-31 01:52:51.078][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-31 01:52:51.079][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-05-31 01:52:51.080][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-31 01:52:51.081][biodb::testContext]
biodb.INFO [2024-05-31 01:52:51.091][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-05-31 01:52:51.093][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-05-31 01:52:51.101][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-31 01:52:51.117][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-31 01:52:51.118][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-31 01:52:51.119][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.122][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-31 01:52:51.142][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-31 01:52:51.143][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.146][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-31 01:52:51.147][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-31 01:52:51.148][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.151][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-31 01:52:51.152][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-31 01:52:51.153][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-31 01:52:51.153][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.156][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-31 01:52:51.157][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-31 01:52:51.158][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-31 01:52:51.159][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.162][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-31 01:52:51.163][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-31 01:52:51.164][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.166][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-31 01:52:51.167][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-31 01:52:51.168][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-31 01:52:51.169][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.172][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-31 01:52:51.173][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-31 01:52:51.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.177][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-31 01:52:51.178][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-31 01:52:51.179][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-31 01:52:51.180][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.182][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-31 01:52:51.183][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-31 01:52:51.184][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-31 01:52:51.185][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-31 01:52:51.186][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-31 01:52:51.187][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-31 01:52:51.188][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.191][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-31 01:52:51.192][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-31 01:52:51.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.195][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-31 01:52:51.196][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-31 01:52:51.197][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.200][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-31 01:52:51.201][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-31 01:52:51.202][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.204][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-31 01:52:51.205][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-31 01:52:51.206][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.209][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-31 01:52:51.210][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-31 01:52:51.211][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.214][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-31 01:52:51.215][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-31 01:52:51.219][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-31 01:52:51.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.222][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-31 01:52:51.223][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-31 01:52:51.224][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-31 01:52:51.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.231][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-31 01:52:51.265][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:51.281][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-31 01:52:51.282][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:51.283][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-31 01:52:51.284][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:51.285][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-31 01:52:51.286][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:51.287][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-31 01:52:51.293][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-31 01:52:51.294][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-31 01:52:51.295][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:51.296][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-31 01:52:51.297][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-31 01:52:51.297][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:51.298][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:51.299][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-31 01:52:51.299][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-31 01:52:51.299][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-31 01:52:51.299][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-31 01:52:51.299][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-31 01:52:51.300][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-31 01:52:51.301][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:51.302][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:51.303][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-31 01:52:51.304][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:51.304][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:51.305][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-31 01:52:51.306][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:51.307][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-31 01:52:51.308][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-31 01:52:51.309][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:51.310][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:51.311][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-31 01:52:51.312][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:51.313][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-31 01:52:51.314][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:51.315][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-31 01:52:51.316][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:51.317][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-31 01:52:51.318][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:51.319][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-31 01:52:51.320][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-31 01:52:51.321][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-31 01:52:51.322][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:51.323][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-31 01:52:51.324][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-31 01:52:51.324][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:51.325][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:51.326][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-31 01:52:51.326][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-31 01:52:51.326][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-31 01:52:51.326][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-31 01:52:51.326][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-31 01:52:51.327][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-31 01:52:51.328][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:51.329][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:51.330][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-31 01:52:51.331][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:51.332][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:51.333][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-31 01:52:51.333][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:51.334][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-31 01:52:51.335][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-31 01:52:51.336][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:51.337][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:51.338][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-31 01:52:51.340][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:51.341][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-31 01:52:51.342][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:51.343][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-31 01:52:51.343][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:51.344][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-31 01:52:51.345][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:51.346][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-31 01:52:51.347][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-31 01:52:51.348][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-31 01:52:51.349][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:51.350][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-31 01:52:51.351][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-31 01:52:51.352][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:51.353][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:51.354][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:51.354][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-31 01:52:51.355][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:51.356][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:51.357][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-31 01:52:51.358][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:51.359][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:51.360][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-31 01:52:51.361][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:51.361][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-31 01:52:51.362][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-31 01:52:51.363][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:51.364][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:51.365][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-31 01:52:51.367][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:51.368][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-31 01:52:51.369][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:51.370][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-31 01:52:51.370][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:51.371][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-31 01:52:51.372][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:51.373][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-31 01:52:51.374][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-31 01:52:51.375][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-31 01:52:51.376][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:51.377][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-31 01:52:51.378][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-31 01:52:51.379][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:51.380][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:51.381][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:51.381][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-31 01:52:51.382][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:51.383][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:51.384][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-31 01:52:51.385][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:51.386][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:51.387][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-31 01:52:51.388][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:51.388][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-31 01:52:51.389][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-31 01:52:51.390][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:51.391][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:51.395][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-31 01:52:51.396][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.397][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.402][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.426][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.430][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.447][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.460][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.472][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-31 01:52:51.477][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-31 01:52:51.478][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-31 01:52:51.479][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-31 01:52:51.480][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-31 01:52:51.482][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-31 01:52:51.483][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-31 01:52:51.484][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-31 01:52:51.486][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-31 01:52:51.487][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-31 01:52:51.488][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-31 01:52:51.489][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-31 01:52:51.491][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-31 01:52:51.492][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-31 01:52:51.493][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-31 01:52:51.494][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-31 01:52:51.496][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-31 01:52:51.497][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-31 01:52:51.498][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-31 01:52:51.500][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-31 01:52:51.501][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-31 01:52:51.502][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-31 01:52:51.503][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-31 01:52:51.505][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-31 01:52:51.506][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-31 01:52:51.507][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-31 01:52:51.508][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-31 01:52:51.510][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-31 01:52:51.511][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-31 01:52:51.512][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-31 01:52:51.514][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-31 01:52:51.515][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-31 01:52:51.516][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-31 01:52:51.517][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-31 01:52:51.519][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-31 01:52:51.520][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-31 01:52:51.521][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-31 01:52:51.522][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-31 01:52:51.524][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-31 01:52:51.525][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-31 01:52:51.526][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-31 01:52:51.527][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-31 01:52:51.529][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-31 01:52:51.530][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-31 01:52:51.531][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-31 01:52:51.533][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-31 01:52:51.534][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-31 01:52:51.535][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-31 01:52:51.537][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-31 01:52:51.538][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-31 01:52:51.539][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-31 01:52:51.540][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-31 01:52:51.542][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-31 01:52:51.543][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-31 01:52:51.544][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-31 01:52:51.545][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-31 01:52:51.547][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-31 01:52:51.548][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-31 01:52:51.549][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-31 01:52:51.551][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-31 01:52:51.552][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-31 01:52:51.553][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-31 01:52:51.554][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-31 01:52:51.556][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-31 01:52:51.557][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-31 01:52:51.558][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-31 01:52:51.559][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-31 01:52:51.561][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-31 01:52:51.562][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-31 01:52:51.563][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-31 01:52:51.564][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-31 01:52:51.566][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-31 01:52:51.567][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-31 01:52:51.568][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-31 01:52:51.570][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-31 01:52:51.571][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-31 01:52:51.572][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-31 01:52:51.573][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-31 01:52:51.575][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-31 01:52:51.576][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-31 01:52:51.577][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-31 01:52:51.579][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-31 01:52:51.580][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-31 01:52:51.586][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-31 01:52:51.587][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-05-31 01:52:51.590][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-31 01:52:51.591][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.593][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:51.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:51.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.604][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:51.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:51.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.609][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:51.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:51.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.615][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:51.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:51.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:51.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:51.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:51.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:51.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.637][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:51.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:51.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:51.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:51.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.649][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:51.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:51.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:51.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:51.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:51.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:51.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.666][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:51.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:51.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:51.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:51.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.677][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:51.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:51.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.683][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:51.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:51.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:51.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:51.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:51.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:51.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:51.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:51.701][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-05-31 01:52:51.711][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-05-31 01:52:51.713][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:51.714][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-05-31 01:52:51.715][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:51.716][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-31 01:52:51.717][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:51.718][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-05-31 01:52:51.719][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:51.720][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-31 01:52:51.721][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-31 01:52:51.722][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-31 01:52:51.723][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:51.724][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-05-31 01:52:51.725][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-31 01:52:51.726][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-05-31 01:52:51.726][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-05-31 01:52:51.726][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-05-31 01:52:51.726][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-05-31 01:52:51.726][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-05-31 01:52:51.726][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-05-31 01:52:51.726][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-05-31 01:52:51.726][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-05-31 01:52:51.726][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-05-31 01:52:51.726][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-05-31 01:52:51.726][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-05-31 01:52:51.726][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-05-31 01:52:51.726][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-05-31 01:52:51.726][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-05-31 01:52:51.726][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-05-31 01:52:51.726][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-05-31 01:52:51.726][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-05-31 01:52:51.726][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-05-31 01:52:51.727][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:51.728][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-31 01:52:51.728][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-05-31 01:52:51.728][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-05-31 01:52:51.729][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-31 01:52:51.730][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:51.730][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:51.731][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-31 01:52:51.732][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:51.733][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:51.734][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-31 01:52:51.735][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-31 01:52:51.735][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-05-31 01:52:51.736][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-31 01:52:51.737][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-31 01:52:51.738][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:51.739][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:51.745][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-05-31 01:52:51.747][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-31 01:52:51.748][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-31 01:52:51.750][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-31 01:52:51.751][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-31 01:52:51.777][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-05-31 01:52:51.778][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-05-31 01:52:51.783][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-31 01:52:51.787][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-31 01:52:51.791][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-31 01:52:51.792][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-31 01:52:51.794][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-05-31 01:52:51.833][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-05-31 01:52:51.834][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-31 01:52:51.834][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-05-31 01:52:51.835][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-31 01:52:51.836][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-31 01:52:51.837][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-05-31 01:52:51.838][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-05-31 01:52:51.839][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-31 01:52:51.855][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-31 01:52:51.856][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-31 01:52:51.857][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-31 01:52:51.858][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-31 01:52:51.859][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-31 01:52:51.860][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-05-31 01:52:51.869][biodb::testThat]
biodb.INFO [2024-05-31 01:52:51.870][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-05-31 01:52:51.871][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-31 01:52:51.871][biodb::testThat]
biodb.TRACE[2024-05-31 01:52:51.876][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2024-05-31 01:52:51.878][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-31 01:52:51.881][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-31 01:52:51.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-31 01:52:51.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:51.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:51.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:51.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:51.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:51.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-31 01:52:51.911][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:51.912][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:51.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:51.914][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:51.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:51.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:51.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:51.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:51.932][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:51.933][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:51.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:51.935][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:51.961][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:51.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:51.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:51.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:51.965][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:51.966][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:51.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:51.968][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:51.969][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:51.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:51.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:51.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:51.973][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:51.974][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:51.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:51.976][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:51.978][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:51.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:51.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:51.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:51.982][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:51.983][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:51.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:51.984][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:51.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:51.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:51.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:51.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:51.998][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:51.999][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:52.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.000][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:52.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:52.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.006][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:52.006][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:52.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.008][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.010][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:52.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:52.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.013][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:52.014][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:52.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.016][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.018][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:52.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:52.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.022][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:52.023][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:52.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.025][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:52.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:52.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.030][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:52.031][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:52.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.033][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:52.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:52.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.038][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:52.039][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:52.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.040][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.042][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:52.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:52.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.045][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:52.046][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:52.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.048][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:52.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:52.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.053][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.054][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.056][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.061][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:52.062][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:52.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.064][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:52.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:52.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.069][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:52.070][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:52.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.072][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.073][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:52.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:52.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.078][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:52.079][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:52.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.081][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.082][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:52.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:52.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.086][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:52.087][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:52.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.089][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.091][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:52.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:52.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.095][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-05-31 01:52:52.096][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:52.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.097][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.099][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-05-31 01:52:52.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:52.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:52.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:52.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:52.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:52.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:52.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:52.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.149][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:52.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:52.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.153][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:52.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:52.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.156][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:52.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:52.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.160][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:52.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:52.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.164][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:52.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:52.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.167][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:52.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:52.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:52.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:52.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:52.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:52.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:52.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:52.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:52.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:52.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:52.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:52.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:52.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:52.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:52.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:52.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:52.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:52.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:52.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:52.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:52.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:52.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:52.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:52.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:52.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:52.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:52.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:52.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:52.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:52.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:52.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:52.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.226][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:52.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:52.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.230][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:52.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:52.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.234][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:52.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:52.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.237][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:52.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:52.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.241][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:52.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:52.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.245][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:52.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:52.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:52.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:52.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:52.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:52.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:52.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:52.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.274][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:52.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:52.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.278][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:52.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:52.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.282][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:52.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:52.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:52.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:52.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:52.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:52.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:52.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:52.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.296][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:52.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:52.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.300][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:52.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:52.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.304][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:52.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:52.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:52.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:52.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:52.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:52.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.315][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:52.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:52.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.318][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:52.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:52.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.322][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:52.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:52.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.325][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:52.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:52.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.329][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:52.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:52.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.333][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:52.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:52.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.336][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:52.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:52.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.340][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-31 01:52:52.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.355][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-31 01:52:52.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.376][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:52.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:52.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.380][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:52.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:52.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.384][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:52.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:52.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:52.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:52.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:52.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:52.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.401][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:52.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:52.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.405][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:52.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:52.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:52.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:52.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.412][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:52.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:52.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:52.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:52.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:52.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:52.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:52.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:52.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:52.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:52.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:52.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:52.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:52.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:52.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-31 01:52:52.438][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2024-05-31 01:52:52.440][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-31 01:52:52.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-31 01:52:52.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.444][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-31 01:52:52.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-31 01:52:52.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.448][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-31 01:52:52.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-31 01:52:52.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.451][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-31 01:52:52.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-31 01:52:52.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:52.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:52.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.478][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:52.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:52.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:52.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:52.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:52.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:52.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:52.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:52.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:52.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:52.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:52.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:52.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:52.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:52.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.510][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:52.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:52.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.514][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:52.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:52.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.517][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:52.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:52.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:52.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:52.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:52.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:52.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:52.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:52.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.543][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:52.544][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:52.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.546][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:52.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:52.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.557][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:52.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:52.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.561][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:52.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:52.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.565][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:52.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:52.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.568][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:52.569][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:52.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.571][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.572][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:52.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:52.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:52.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:52.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:52.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:52.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:52.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:52.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.593][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:52.594][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:52.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.596][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:52.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:52.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.608][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:52.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:52.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.612][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:52.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:52.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.615][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:52.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:52.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.619][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:52.620][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:52.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.622][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:52.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:52.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:52.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:52.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:52.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:52.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:52.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:52.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.645][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:52.646][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:52.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.647][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:52.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:52.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.659][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:52.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:52.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.663][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:52.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:52.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.666][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:52.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:52.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.670][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:52.671][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:52.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.673][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.678][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:52.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:52.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.689][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:52.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:52.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.693][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:52.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:52.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.696][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:52.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:52.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.700][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:52.701][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:52.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.703][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.704][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:52.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:52.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.714][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:52.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:52.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.718][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:52.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:52.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.722][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:52.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:52.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.726][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:52.727][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:52.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.729][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.730][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:52.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:52.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.740][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:52.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:52.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.744][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:52.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:52.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.748][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:52.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:52.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.752][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:52.753][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:52.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.754][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.755][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:52.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:52.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.766][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:52.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:52.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.770][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:52.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:52.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.773][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:52.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:52.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.777][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:52.778][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:52.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.780][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.781][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:52.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:52.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:52.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:52.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:52.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:52.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:52.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:52.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.803][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:52.804][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:52.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.806][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:52.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:52.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:52.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:52.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:52.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:52.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:52.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:52.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.835][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:52.836][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:52.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.838][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:52.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:52.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:52.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:52.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:52.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:52.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:52.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:52.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.861][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:52.862][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:52.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.864][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:52.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:52.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:52.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:52.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:52.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:52.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:52.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:52.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.888][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:52.889][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:52.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.890][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:52.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:52.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.902][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:52.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:52.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.906][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:52.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:52.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.910][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:52.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:52.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.914][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:52.915][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:52.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.917][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.918][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:52.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:52.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:52.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:52.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:52.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:52.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:52.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:52.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.941][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:52.943][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:52.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.945][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:52.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:52.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.975][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.976][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.977][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:52.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.989][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:52.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:52.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.993][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:52.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:52.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:52.997][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:52.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:52.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:52.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.000][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:53.001][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:53.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.003][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.004][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:53.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:53.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.014][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:53.015][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:53.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.017][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.021][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:53.022][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:53.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.024][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.028][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:53.029][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:53.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.031][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.035][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:53.036][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:53.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.037][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.041][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:53.042][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:53.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.044][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.048][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:53.049][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:53.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.051][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.055][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:53.056][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:53.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.058][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.062][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:53.063][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:53.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.064][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.068][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:53.069][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:53.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.071][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.075][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:53.076][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:53.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.078][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.082][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:53.083][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:53.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.085][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.094][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:53.095][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:53.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.097][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.101][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:53.102][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:53.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.103][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.108][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:53.109][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:53.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.110][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.115][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:53.116][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:53.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.118][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.122][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:53.123][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:53.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.125][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.130][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.131][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.132][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.137][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:53.138][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:53.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.140][ef$get] fields variable is a list.
biodb.INFO [2024-05-31 01:52:53.148][biodb::testThat]
biodb.INFO [2024-05-31 01:52:53.149][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-05-31 01:52:53.150][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-31 01:52:53.151][biodb::testThat]
biodb.DEBUG[2024-05-31 01:52:53.165][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-05-31 01:52:53.173][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-31 01:52:53.178][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:53.180][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-31 01:52:53.182][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-05-31 01:52:53.183][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-31 01:52:53.185][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-05-31 01:52:53.186][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-31 01:52:53.209][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-31 01:52:53.210][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-31 01:52:53.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-31 01:52:53.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:53.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:53.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:53.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:53.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:53.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-31 01:52:53.224][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:53.225][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:53.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.226][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:53.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:53.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.237][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.238][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.240][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.241][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.245][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:53.246][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:53.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.247][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.249][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:53.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:53.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.253][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:53.254][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:53.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.255][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.257][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:53.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:53.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.260][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:53.261][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:53.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.263][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:53.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:53.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.268][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:53.269][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:53.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.271][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:53.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:53.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.276][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:53.277][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:53.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.279][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.280][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:53.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:53.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.284][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:53.285][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:53.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.286][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.288][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:53.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:53.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.291][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:53.292][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:53.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.294][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:53.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:53.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.299][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:53.300][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:53.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.302][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:53.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:53.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.307][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:53.308][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:53.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.310][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.311][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:53.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:53.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.315][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:53.316][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:53.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.317][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:53.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:53.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.322][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:53.323][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:53.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.325][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:53.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:53.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.330][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:53.331][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:53.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.333][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:53.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:53.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.338][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:53.339][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:53.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.341][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.342][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:53.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:53.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.345][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:53.346][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:53.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.348][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.349][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:53.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:53.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.353][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:53.354][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:53.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.356][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.357][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:53.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:53.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.361][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-05-31 01:52:53.362][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:53.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.364][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.369][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-05-31 01:52:53.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:53.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:53.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:53.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:53.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:53.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:53.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:53.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.384][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:53.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:53.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.388][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:53.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:53.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.391][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:53.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:53.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.395][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:53.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:53.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.399][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:53.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:53.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.403][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:53.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:53.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:53.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:53.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:53.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:53.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:53.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:53.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:53.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:53.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:53.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:53.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:53.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:53.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:53.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:53.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:53.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:53.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:53.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:53.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:53.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:53.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:53.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:53.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:53.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:53.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:53.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:53.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:53.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:53.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:53.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:53.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.463][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:53.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:53.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.466][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:53.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:53.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.470][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:53.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:53.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.474][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:53.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:53.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.478][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:53.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:53.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.482][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:53.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:53.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:53.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:53.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:53.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:53.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:53.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:53.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:53.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:53.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:53.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:53.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:53.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:53.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.512][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:53.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:53.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.516][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:53.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:53.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.520][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:53.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:53.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:53.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:53.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:53.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:53.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:53.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:53.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.535][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:53.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:53.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.538][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:53.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:53.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.542][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:53.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:53.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:53.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:53.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.550][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:53.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:53.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:53.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:53.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.557][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.561][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.565][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:53.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:53.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.572][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:53.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:53.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:53.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:53.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.580][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-31 01:52:53.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:53.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:53.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:53.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:53.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:53.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:53.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:53.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.595][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-31 01:52:53.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:53.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.600][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:53.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:53.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.604][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:53.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:53.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.607][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:53.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:53.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.611][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:53.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:53.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:53.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:53.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.619][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:53.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:53.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.623][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:53.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:53.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:53.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:53.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.636][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:53.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:53.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:53.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:53.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:53.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:53.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:53.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:53.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:53.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:53.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:53.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:53.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:53.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:53.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-31 01:52:53.662][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-05-31 01:52:53.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-31 01:52:53.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-31 01:52:53.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-31 01:52:53.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-31 01:52:53.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-31 01:52:53.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-31 01:52:53.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-31 01:52:53.681][biodb::testThat]
biodb.INFO [2024-05-31 01:52:53.682][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-05-31 01:52:53.683][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-31 01:52:53.684][biodb::testThat]
biodb.TRACE[2024-05-31 01:52:53.687][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:53.688][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:53.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.690][ef$get] fields variable is a list.
biodb.DEBUG[2024-05-31 01:52:53.691][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2024-05-31 01:52:53.715][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:53.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:53.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.719][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:53.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:53.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.723][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:53.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:53.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-31 01:52:53.730][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2024-05-31 01:52:53.731][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-05-31 01:52:53.732][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-05-31 01:52:53.733][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-05-31 01:52:53.734][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:53.736][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:53.737][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-31 01:52:53.738][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:53.739][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-31 01:52:53.740][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-31 01:52:53.741][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-31 01:52:53.743][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-31 01:52:53.743][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-31 01:52:53.744][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-31 01:52:53.745][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-31 01:52:53.747][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:53.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:53.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.751][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:53.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:53.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.755][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:53.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:53.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:53.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:53.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-31 01:52:53.767][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-31 01:52:53.768][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-31 01:52:53.769][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-05-31 01:52:53.779][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:53.780][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:53.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.782][ef$get] fields variable is a list.
biodb.DEBUG[2024-05-31 01:52:53.783][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2024-05-31 01:52:53.793][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:53.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:53.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.797][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:53.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:53.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.801][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:53.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:53.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-31 01:52:53.807][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2024-05-31 01:52:53.859][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-05-31 01:52:53.861][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-05-31 01:52:53.862][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-05-31 01:52:53.881][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:53.882][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:53.883][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-31 01:52:53.885][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:53.886][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-31 01:52:53.901][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-31 01:52:53.902][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-31 01:52:53.903][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-31 01:52:53.904][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-31 01:52:53.905][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-31 01:52:53.905][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-31 01:52:53.907][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:53.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:53.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.911][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:53.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:53.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.915][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:53.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:53.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.918][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:53.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:53.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-31 01:52:53.922][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-31 01:52:53.923][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-31 01:52:53.924][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-05-31 01:52:53.934][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.936][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.937][ef$get] fields variable is a list.
biodb.DEBUG[2024-05-31 01:52:53.939][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2024-05-31 01:52:53.949][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.953][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.957][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-31 01:52:53.963][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2024-05-31 01:52:53.965][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2024-05-31 01:52:53.966][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-05-31 01:52:53.967][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-05-31 01:52:53.968][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:53.970][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:53.971][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-31 01:52:53.972][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:53.973][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-31 01:52:53.974][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-31 01:52:53.975][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-31 01:52:53.976][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-31 01:52:53.977][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-31 01:52:53.978][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-31 01:52:53.979][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-31 01:52:53.981][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.984][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.988][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:53.992][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:53.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:53.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-31 01:52:53.995][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-31 01:52:53.996][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-31 01:52:53.997][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2024-05-31 01:52:54.016][biodb::testThat]
biodb.INFO [2024-05-31 01:52:54.017][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-05-31 01:52:54.018][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-31 01:52:54.019][biodb::testThat]
biodb.TRACE[2024-05-31 01:52:54.029][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:54.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:54.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:54.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:54.033][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:54.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:54.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:54.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:54.037][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:54.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:54.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:54.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-31 01:52:54.051][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-05-31 01:52:54.052][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-05-31 01:52:54.053][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-05-31 01:52:54.055][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:54.056][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:54.058][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-31 01:52:54.059][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:54.060][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-31 01:52:54.061][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-31 01:52:54.062][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-31 01:52:54.063][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-31 01:52:54.064][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-31 01:52:54.065][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-31 01:52:54.066][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-31 01:52:54.068][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:54.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:54.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:54.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:54.072][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:54.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:54.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:54.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:54.076][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:54.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:54.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:54.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:54.080][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:54.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:54.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:54.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-31 01:52:54.084][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-31 01:52:54.085][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2024-05-31 01:52:54.098][biodb::testThat]
biodb.INFO [2024-05-31 01:52:54.099][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-05-31 01:52:54.100][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-31 01:52:54.101][biodb::testThat]
biodb.TRACE[2024-05-31 01:52:54.122][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-31 01:52:54.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-31 01:52:54.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:54.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:54.126][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-31 01:52:54.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-31 01:52:54.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:54.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:54.130][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-31 01:52:54.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-31 01:52:54.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:54.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:54.134][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-31 01:52:54.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-31 01:52:54.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:54.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:54.186][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-31 01:52:54.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-31 01:52:54.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:54.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:54.191][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-31 01:52:54.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-31 01:52:54.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:54.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:54.194][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-31 01:52:54.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-31 01:52:54.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:54.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:54.198][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-31 01:52:54.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-31 01:52:54.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:54.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-31 01:52:54.208][biodb::testThat]
biodb.INFO [2024-05-31 01:52:54.209][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-05-31 01:52:54.210][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-31 01:52:54.211][biodb::testThat]
biodb.INFO [2024-05-31 01:52:54.219][biodb::testThat]
biodb.INFO [2024-05-31 01:52:54.220][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-05-31 01:52:54.221][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-31 01:52:54.222][biodb::testThat]
biodb.INFO [2024-05-31 01:52:54.230][biodb::testThat]
biodb.INFO [2024-05-31 01:52:54.231][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-05-31 01:52:54.232][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-31 01:52:54.233][biodb::testThat]
biodb.DEBUG[2024-05-31 01:52:54.236][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2024-05-31 01:52:55.649][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2024-05-31 01:52:55.726][biodb::testThat]
biodb.INFO [2024-05-31 01:52:55.728][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-05-31 01:52:55.731][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-31 01:52:55.733][biodb::testThat]
biodb.DEBUG[2024-05-31 01:52:55.924][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2024-05-31 01:52:55.989][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:55.991][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:55.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:55.994][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:55.995][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:55.997][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:55.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:55.999][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:56.001][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:56.002][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:56.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:56.005][ef$get] fields variable is a list.
biodb.INFO [2024-05-31 01:52:56.007][biodb::testThat]
biodb.INFO [2024-05-31 01:52:56.008][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2024-05-31 01:52:56.009][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-31 01:52:56.011][biodb::testThat]
biodb.DEBUG[2024-05-31 01:52:56.014][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-05-31 01:52:56.139][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-31 01:52:56.142][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:56.144][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-31 01:52:56.162][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-05-31 01:52:56.164][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-31 01:52:56.165][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-31 01:52:56.166][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-31 01:52:56.168][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:56.169][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-31 01:52:56.170][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-31 01:52:56.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-31 01:52:56.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:56.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:56.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:56.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:56.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-31 01:52:56.184][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:56.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:56.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:56.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:56.188][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:56.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:56.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:56.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:56.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:56.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:56.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:56.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:56.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:56.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:56.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:56.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:56.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:56.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:56.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:56.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:56.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:56.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:56.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:56.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:56.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:56.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:56.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:56.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:56.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:56.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:56.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:56.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-31 01:52:56.221][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-05-31 01:52:56.223][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-05-31 01:52:56.239][biodb::testThat]
biodb.INFO [2024-05-31 01:52:56.241][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-05-31 01:52:56.241][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-31 01:52:56.242][biodb::testThat]
biodb.DEBUG[2024-05-31 01:52:56.250][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2024-05-31 01:52:56.251][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-05-31 01:52:56.253][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-31 01:52:56.254][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:56.256][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-31 01:52:56.257][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2024-05-31 01:52:56.259][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-31 01:52:56.260][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-31 01:52:56.261][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-31 01:52:56.262][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:56.264][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-31 01:52:56.265][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-31 01:52:56.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-31 01:52:56.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:56.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:56.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:56.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:56.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-31 01:52:56.278][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:56.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:56.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:56.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:56.282][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:56.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:56.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:56.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:56.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:56.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:56.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:56.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:56.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:56.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:56.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:56.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:56.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:56.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:56.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:56.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:56.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:56.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:56.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:56.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:56.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:56.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:56.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:56.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:56.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:56.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:56.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:56.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-31 01:52:56.350][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-05-31 01:52:56.351][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-05-31 01:52:56.352][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2024-05-31 01:52:56.364][biodb::testThat]
biodb.INFO [2024-05-31 01:52:56.366][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2024-05-31 01:52:56.367][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-31 01:52:56.367][biodb::testThat]
biodb.INFO [2024-05-31 01:52:56.389][biodb::testThat]
biodb.INFO [2024-05-31 01:52:56.390][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2024-05-31 01:52:56.391][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-31 01:52:56.392][biodb::testThat]
biodb.DEBUG[2024-05-31 01:52:56.395][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:56.396][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:56.398][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-31 01:52:56.399][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:56.400][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-31 01:52:56.402][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-31 01:52:56.403][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-31 01:52:56.404][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-31 01:52:56.405][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2024-05-31 01:52:56.413][biodb::testThat]
biodb.INFO [2024-05-31 01:52:56.414][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2024-05-31 01:52:56.415][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-31 01:52:56.416][biodb::testThat]
biodb.DEBUG[2024-05-31 01:52:56.419][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:56.420][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:56.422][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-31 01:52:56.423][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:56.424][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-31 01:52:56.426][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-31 01:52:56.427][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-31 01:52:56.428][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-31 01:52:56.429][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2024-05-31 01:52:56.438][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:56.440][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:56.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:56.442][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:56.443][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:56.444][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:56.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:56.446][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:56.447][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:56.448][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:56.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:56.450][ef$get] fields variable is a list.
biodb.INFO [2024-05-31 01:52:56.451][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-31 01:52:56.453][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-05-31 01:52:56.503][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-05-31 01:52:56.505][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-31 01:52:56.507][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:56.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:56.509][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:56.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:56.511][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-05-31 01:52:56.519][biodb::testContext]
biodb.INFO [2024-05-31 01:52:56.521][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-31 01:52:56.522][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2024-05-31 01:52:56.523][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-31 01:52:56.524][biodb::testContext]
biodb.INFO [2024-05-31 01:52:56.530][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-05-31 01:52:56.532][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-05-31 01:52:56.537][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-31 01:52:56.539][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-31 01:52:56.540][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-31 01:52:56.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.545][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-31 01:52:56.546][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-31 01:52:56.547][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.550][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-31 01:52:56.551][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-31 01:52:56.552][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.555][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-31 01:52:56.556][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-31 01:52:56.557][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-31 01:52:56.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.561][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-31 01:52:56.562][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-31 01:52:56.563][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-31 01:52:56.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.567][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-31 01:52:56.568][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-31 01:52:56.569][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.573][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-31 01:52:56.574][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-31 01:52:56.575][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-31 01:52:56.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.579][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-31 01:52:56.580][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-31 01:52:56.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.585][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-31 01:52:56.586][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-31 01:52:56.587][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-31 01:52:56.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.592][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-31 01:52:56.593][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-31 01:52:56.595][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-31 01:52:56.596][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-31 01:52:56.597][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-31 01:52:56.599][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-31 01:52:56.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.603][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-31 01:52:56.604][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-31 01:52:56.606][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.609][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-31 01:52:56.610][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-31 01:52:56.612][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.615][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-31 01:52:56.616][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-31 01:52:56.618][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.622][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-31 01:52:56.623][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-31 01:52:56.624][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.627][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-31 01:52:56.629][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-31 01:52:56.630][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.633][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-31 01:52:56.651][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-31 01:52:56.655][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-31 01:52:56.656][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.659][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-31 01:52:56.660][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-31 01:52:56.661][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-31 01:52:56.662][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.665][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-31 01:52:56.667][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:56.668][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-31 01:52:56.669][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:56.670][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-31 01:52:56.670][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:56.671][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-31 01:52:56.672][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:56.673][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-31 01:52:56.674][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-31 01:52:56.675][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-31 01:52:56.676][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:56.677][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-31 01:52:56.678][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-31 01:52:56.679][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:56.680][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:56.681][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-31 01:52:56.681][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-31 01:52:56.681][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-31 01:52:56.681][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-31 01:52:56.681][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-31 01:52:56.682][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-31 01:52:56.683][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:56.684][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:56.685][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-31 01:52:56.686][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:56.687][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:56.688][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-31 01:52:56.689][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:56.690][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-31 01:52:56.691][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-31 01:52:56.692][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:56.693][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:56.694][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-31 01:52:56.696][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:56.697][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-31 01:52:56.698][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:56.699][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-31 01:52:56.700][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:56.701][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-31 01:52:56.702][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:56.703][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-31 01:52:56.704][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-31 01:52:56.705][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-31 01:52:56.706][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:56.707][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-31 01:52:56.707][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-31 01:52:56.708][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:56.709][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:56.710][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-31 01:52:56.710][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-31 01:52:56.710][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-31 01:52:56.710][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-31 01:52:56.710][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-31 01:52:56.711][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-31 01:52:56.712][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:56.713][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:56.714][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-31 01:52:56.715][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:56.716][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:56.717][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-31 01:52:56.718][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:56.719][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-31 01:52:56.719][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-31 01:52:56.720][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:56.721][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:56.722][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-31 01:52:56.724][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:56.725][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-31 01:52:56.726][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:56.727][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-31 01:52:56.728][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:56.729][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-31 01:52:56.730][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:56.731][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-31 01:52:56.732][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-31 01:52:56.733][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-31 01:52:56.735][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:56.736][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-31 01:52:56.737][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-31 01:52:56.738][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:56.739][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:56.740][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:56.741][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-31 01:52:56.742][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:56.743][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:56.744][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-31 01:52:56.745][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:56.746][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:56.747][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-31 01:52:56.748][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:56.749][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-31 01:52:56.750][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-31 01:52:56.751][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:56.752][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:56.753][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-31 01:52:56.755][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:56.756][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-31 01:52:56.757][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:56.765][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-31 01:52:56.766][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:56.768][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-31 01:52:56.769][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:56.770][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-31 01:52:56.771][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-31 01:52:56.772][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-31 01:52:56.773][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:56.774][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-31 01:52:56.775][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-31 01:52:56.776][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:56.777][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:56.778][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:56.779][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-31 01:52:56.780][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:56.781][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:56.782][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-31 01:52:56.783][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:56.784][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:56.785][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-31 01:52:56.785][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:56.786][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-31 01:52:56.787][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-31 01:52:56.788][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:56.789][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:56.790][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-31 01:52:56.791][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.793][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:56.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:56.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:56.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:56.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.802][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:56.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:56.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.808][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:56.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:56.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.813][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:56.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:56.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.818][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:56.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:56.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:56.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:56.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:56.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:56.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:56.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:56.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.836][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:56.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:56.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:56.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:56.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:56.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:56.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.849][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:56.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:56.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:56.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:56.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:56.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:56.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:56.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:56.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:56.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:56.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.875][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-31 01:52:56.876][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-31 01:52:56.878][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-31 01:52:56.879][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-31 01:52:56.880][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-31 01:52:56.882][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-31 01:52:56.883][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-31 01:52:56.884][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-31 01:52:56.886][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-31 01:52:56.887][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-31 01:52:56.888][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-31 01:52:56.889][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-31 01:52:56.891][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-31 01:52:56.892][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-31 01:52:56.893][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-31 01:52:56.894][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-31 01:52:56.896][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-31 01:52:56.897][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-31 01:52:56.898][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-31 01:52:56.900][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-31 01:52:56.901][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-31 01:52:56.902][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-31 01:52:56.904][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-31 01:52:56.905][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-31 01:52:56.906][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-31 01:52:56.908][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-31 01:52:56.909][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-31 01:52:56.910][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-31 01:52:56.912][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-31 01:52:56.913][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-31 01:52:56.914][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-31 01:52:56.915][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-31 01:52:56.917][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-31 01:52:56.918][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-31 01:52:56.919][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-31 01:52:56.921][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-31 01:52:56.922][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-31 01:52:56.923][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-31 01:52:56.925][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-31 01:52:56.926][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-31 01:52:56.927][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-31 01:52:56.929][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-31 01:52:56.930][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-31 01:52:56.931][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-31 01:52:56.933][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-31 01:52:56.934][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-31 01:52:56.935][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-31 01:52:56.937][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-31 01:52:56.938][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-31 01:52:56.939][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-31 01:52:56.941][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-31 01:52:56.942][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-31 01:52:56.943][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-31 01:52:56.945][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-31 01:52:56.946][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-31 01:52:56.947][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-31 01:52:56.949][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-31 01:52:56.950][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-31 01:52:56.951][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-31 01:52:56.953][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-31 01:52:56.954][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-31 01:52:56.955][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-31 01:52:56.957][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-31 01:52:56.958][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-31 01:52:56.960][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-31 01:52:56.961][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-31 01:52:56.962][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-31 01:52:56.964][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-31 01:52:56.965][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-31 01:52:56.966][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-31 01:52:56.968][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-31 01:52:56.969][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-31 01:52:56.976][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-31 01:52:56.978][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-31 01:52:56.979][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-31 01:52:56.981][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-31 01:52:56.982][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-31 01:52:56.983][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-31 01:52:56.985][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-31 01:52:56.986][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-31 01:52:56.987][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-31 01:52:56.989][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-31 01:52:56.990][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-31 01:52:56.991][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-31 01:52:56.993][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-05-31 01:52:56.994][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-31 01:52:56.994][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:56.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:56.996][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:56.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:56.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:56.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:56.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:57.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:57.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:57.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.004][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:57.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:57.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:57.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:57.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.009][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:57.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:57.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:57.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:57.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.015][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:57.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:57.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:57.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:57.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.021][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:57.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:57.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:57.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:57.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:57.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:57.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:57.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:57.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:57.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:57.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:57.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:57.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.039][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:57.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:57.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:57.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:57.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.045][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:57.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:57.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:57.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:57.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.051][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:57.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:57.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:57.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:57.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.057][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:57.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:57.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:57.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:57.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.063][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:57.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:57.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:57.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:57.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.069][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:57.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:57.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:57.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:57.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:57.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:57.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:57.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:57.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:57.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:57.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:57.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:57.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.093][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:57.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:57.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:57.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:57.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.099][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:57.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:57.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:57.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:57.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.106][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-05-31 01:52:57.108][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-05-31 01:52:57.110][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:57.111][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-05-31 01:52:57.112][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:57.113][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-31 01:52:57.114][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:57.115][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-05-31 01:52:57.116][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:57.117][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-31 01:52:57.118][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-31 01:52:57.119][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-31 01:52:57.120][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:57.121][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-05-31 01:52:57.122][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-31 01:52:57.123][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-05-31 01:52:57.123][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-05-31 01:52:57.123][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-05-31 01:52:57.123][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-05-31 01:52:57.123][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-05-31 01:52:57.123][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-05-31 01:52:57.123][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-05-31 01:52:57.123][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-05-31 01:52:57.123][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-05-31 01:52:57.123][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-05-31 01:52:57.123][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-05-31 01:52:57.123][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-05-31 01:52:57.123][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-05-31 01:52:57.123][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-05-31 01:52:57.123][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-05-31 01:52:57.123][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-05-31 01:52:57.123][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-05-31 01:52:57.123][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-05-31 01:52:57.124][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:57.125][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-31 01:52:57.125][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-05-31 01:52:57.125][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-05-31 01:52:57.126][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-31 01:52:57.127][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:57.128][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:57.129][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-31 01:52:57.130][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:57.131][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:57.131][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-31 01:52:57.132][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-31 01:52:57.132][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-05-31 01:52:57.133][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-31 01:52:57.134][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-31 01:52:57.135][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:57.136][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:57.138][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-05-31 01:52:57.139][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-31 01:52:57.141][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-31 01:52:57.143][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-31 01:52:57.144][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-31 01:52:57.147][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-05-31 01:52:57.149][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-05-31 01:52:57.150][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-31 01:52:57.151][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-31 01:52:57.153][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-31 01:52:57.154][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-31 01:52:57.155][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-05-31 01:52:57.156][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-05-31 01:52:57.157][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-31 01:52:57.157][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-05-31 01:52:57.158][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-31 01:52:57.159][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-31 01:52:57.160][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-05-31 01:52:57.161][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-05-31 01:52:57.162][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-31 01:52:57.164][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-31 01:52:57.165][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-31 01:52:57.166][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-31 01:52:57.167][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-31 01:52:57.169][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-31 01:52:57.169][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-05-31 01:52:57.171][biodb::testThat]
biodb.INFO [2024-05-31 01:52:57.172][biodb::testThat] Running test function test.hmdbmetabolite.nbentries (" HMDB metabolite returns enough entries. ").
biodb.INFO [2024-05-31 01:52:57.173][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-31 01:52:57.174][biodb::testThat]
biodb.DEBUG[2024-05-31 01:52:57.178][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:57.180][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:57.182][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-31 01:52:57.183][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:57.190][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-31 01:52:57.192][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-31 01:52:57.193][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-31 01:52:57.194][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-31 01:52:57.195][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-31 01:52:57.199][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-05-31 01:52:57.205][biodb::testThat]
biodb.INFO [2024-05-31 01:52:57.206][biodb::testThat] Running test function test.old.accession (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2024-05-31 01:52:57.207][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-31 01:52:57.208][biodb::testThat]
biodb.DEBUG[2024-05-31 01:52:57.210][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-05-31 01:52:57.211][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-31 01:52:57.212][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:57.214][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-31 01:52:57.216][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-05-31 01:52:57.217][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-31 01:52:57.219][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-05-31 01:52:57.220][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-31 01:52:57.221][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-31 01:52:57.223][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-31 01:52:57.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-31 01:52:57.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:57.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:57.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:57.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:57.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-31 01:52:57.237][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:57.238][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:57.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.240][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:57.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:57.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.245][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:57.246][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:57.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.248][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.250][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:57.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:57.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.253][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:57.255][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:57.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.256][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.258][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:57.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:57.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.262][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:57.263][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:57.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.265][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.266][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:57.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:57.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.270][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:57.271][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:57.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.273][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:57.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:57.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.279][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:57.280][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:57.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.281][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:57.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:57.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.287][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:57.288][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:57.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.289][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.291][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:57.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:57.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.295][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:57.296][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:57.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.298][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.299][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:57.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:57.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.309][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:57.311][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:57.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.312][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:57.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:57.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.318][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:57.319][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:57.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.320][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:57.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:57.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.326][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:57.327][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:57.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.329][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.330][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:57.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:57.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.334][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:57.335][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:57.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.337][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:57.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:57.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.342][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:57.343][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:57.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.345][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:57.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:57.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.350][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:57.351][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:57.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.353][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:57.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:57.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.359][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:57.360][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:57.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.362][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.363][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:57.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:57.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.367][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:57.368][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:57.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.370][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.372][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:57.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:57.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.376][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:57.378][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:57.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.380][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.381][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:57.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:57.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.385][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-05-31 01:52:57.386][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:57.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.388][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.390][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-05-31 01:52:57.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:57.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:57.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:57.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:57.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:57.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:57.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:57.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.406][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:57.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:57.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.410][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:57.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:57.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.421][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:57.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:57.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.425][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:57.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:57.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.429][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:57.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:57.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.433][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:57.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:57.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:57.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:57.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:57.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:57.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:57.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:57.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:57.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:57.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:57.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:57.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:57.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:57.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:57.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:57.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:57.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:57.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:57.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:57.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:57.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:57.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:57.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:57.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:57.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:57.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:57.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:57.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:57.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:57.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:57.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:57.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.497][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:57.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:57.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.502][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:57.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:57.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.506][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:57.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:57.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.510][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:57.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:57.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.514][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:57.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:57.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.519][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:57.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:57.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.523][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:57.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:57.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:57.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:57.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:57.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:57.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:57.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:57.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.547][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:57.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:57.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:57.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:57.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.555][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:57.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:57.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.559][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:57.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:57.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.563][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:57.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:57.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:57.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:57.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:57.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:57.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:57.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:57.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.579][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:57.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:57.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.583][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:57.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:57.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.587][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:57.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:57.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.591][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:57.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:57.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.595][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:57.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:57.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:57.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:57.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.602][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:57.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:57.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.607][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:57.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:57.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.611][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:57.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:57.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.615][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:57.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:57.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.619][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:57.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:57.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.623][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:57.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:57.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.627][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-31 01:52:57.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:57.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:57.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:57.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:57.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:57.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:57.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:57.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.653][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-31 01:52:57.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:57.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.658][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:57.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:57.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.662][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:57.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:57.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.666][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:57.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:57.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.670][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:57.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:57.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.674][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:57.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:57.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.678][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:57.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:57.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.682][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:57.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:57.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:57.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:57.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.690][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:57.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:57.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:57.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:57.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:57.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:57.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:57.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:57.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:57.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:57.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:57.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:57.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:57.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:57.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-31 01:52:57.720][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-05-31 01:52:57.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:57.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:57.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:57.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:57.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:57.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:57.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:57.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:57.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-31 01:52:57.741][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-31 01:52:57.742][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-05-31 01:52:57.743][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-05-31 01:52:57.744][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-31 01:52:57.745][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:57.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:57.747][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:57.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:57.749][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-05-31 01:52:57.754][biodb::testContext]
biodb.INFO [2024-05-31 01:52:57.762][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-31 01:52:57.764][biodb::testContext] Test context - Test search of entries
biodb.INFO [2024-05-31 01:52:57.765][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-31 01:52:57.766][biodb::testContext]
biodb.INFO [2024-05-31 01:52:57.775][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-05-31 01:52:57.778][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-05-31 01:52:57.783][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-31 01:52:57.784][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-31 01:52:57.785][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-31 01:52:57.787][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.790][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-31 01:52:57.791][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-31 01:52:57.792][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.795][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-31 01:52:57.797][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-31 01:52:57.797][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.801][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-31 01:52:57.802][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-31 01:52:57.803][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-31 01:52:57.804][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.807][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-31 01:52:57.809][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-31 01:52:57.810][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-31 01:52:57.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.813][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-31 01:52:57.815][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-31 01:52:57.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.818][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-31 01:52:57.819][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-31 01:52:57.820][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-31 01:52:57.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.824][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-31 01:52:57.825][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-31 01:52:57.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.829][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-31 01:52:57.830][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-31 01:52:57.831][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-31 01:52:57.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.835][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-31 01:52:57.836][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-31 01:52:57.837][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-31 01:52:57.838][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-31 01:52:57.839][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-31 01:52:57.840][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-31 01:52:57.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.844][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-31 01:52:57.845][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-31 01:52:57.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.849][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-31 01:52:57.850][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-31 01:52:57.851][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.854][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-31 01:52:57.855][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-31 01:52:57.856][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.859][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-31 01:52:57.860][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-31 01:52:57.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.864][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-31 01:52:57.865][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-31 01:52:57.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.869][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-31 01:52:57.870][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-31 01:52:57.873][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-31 01:52:57.874][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.878][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-31 01:52:57.879][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-31 01:52:57.880][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-31 01:52:57.881][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:57.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:57.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:57.898][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-31 01:52:57.901][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:57.903][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-31 01:52:57.904][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:57.905][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-31 01:52:57.906][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:57.907][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-31 01:52:57.908][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:57.909][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-31 01:52:57.910][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-31 01:52:57.911][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-31 01:52:57.912][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:57.913][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-31 01:52:57.914][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-31 01:52:57.915][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:57.916][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:57.916][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-31 01:52:57.916][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-31 01:52:57.916][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-31 01:52:57.916][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-31 01:52:57.916][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-31 01:52:57.917][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-31 01:52:57.918][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:57.919][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:57.920][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-31 01:52:57.921][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:57.922][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:57.923][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-31 01:52:57.924][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:57.925][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-31 01:52:57.925][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-31 01:52:57.926][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:57.927][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:57.929][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-31 01:52:57.930][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:57.931][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-31 01:52:57.932][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:57.933][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-31 01:52:57.934][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:57.935][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-31 01:52:57.936][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:57.937][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-31 01:52:57.938][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-31 01:52:57.939][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-31 01:52:57.940][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:57.940][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-31 01:52:57.941][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-31 01:52:57.942][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:57.943][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:57.944][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-31 01:52:57.944][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-31 01:52:57.944][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-31 01:52:57.944][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-31 01:52:57.944][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-31 01:52:57.945][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-31 01:52:57.946][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:57.947][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:57.948][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-31 01:52:57.949][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:57.950][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:57.951][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-31 01:52:57.951][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:57.952][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-31 01:52:57.953][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-31 01:52:57.954][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:57.955][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:57.956][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-31 01:52:57.958][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:57.959][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-31 01:52:57.960][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:57.961][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-31 01:52:57.962][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:57.963][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-31 01:52:57.964][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:57.965][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-31 01:52:57.965][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-31 01:52:57.966][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-31 01:52:57.967][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:57.968][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-31 01:52:57.969][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-31 01:52:57.970][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:57.971][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:57.972][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:57.973][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-31 01:52:57.974][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:57.975][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:57.976][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-31 01:52:57.977][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:57.977][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:57.978][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-31 01:52:57.979][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:57.980][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-31 01:52:57.981][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-31 01:52:57.982][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:57.983][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:57.984][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-31 01:52:57.986][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:57.986][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-31 01:52:57.987][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:57.988][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-31 01:52:57.989][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:57.990][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-31 01:52:57.991][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:57.992][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-31 01:52:57.993][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-31 01:52:57.994][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-31 01:52:58.001][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:58.002][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-31 01:52:58.003][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-31 01:52:58.004][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:58.005][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:58.006][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:58.007][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-31 01:52:58.008][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:58.009][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:58.009][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-31 01:52:58.010][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:58.011][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:58.012][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-31 01:52:58.013][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:58.014][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-31 01:52:58.015][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-31 01:52:58.016][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:58.017][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:58.018][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-31 01:52:58.019][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.037][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.042][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.050][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.054][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.059][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.063][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.067][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.071][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.079][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.084][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.088][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.092][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-31 01:52:58.094][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-31 01:52:58.100][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-31 01:52:58.102][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-31 01:52:58.103][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-31 01:52:58.105][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-31 01:52:58.106][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-31 01:52:58.107][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-31 01:52:58.109][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-31 01:52:58.110][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-31 01:52:58.111][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-31 01:52:58.113][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-31 01:52:58.114][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-31 01:52:58.115][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-31 01:52:58.117][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-31 01:52:58.118][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-31 01:52:58.119][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-31 01:52:58.120][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-31 01:52:58.122][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-31 01:52:58.123][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-31 01:52:58.125][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-31 01:52:58.126][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-31 01:52:58.127][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-31 01:52:58.129][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-31 01:52:58.130][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-31 01:52:58.131][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-31 01:52:58.133][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-31 01:52:58.134][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-31 01:52:58.135][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-31 01:52:58.137][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-31 01:52:58.138][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-31 01:52:58.139][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-31 01:52:58.141][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-31 01:52:58.142][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-31 01:52:58.143][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-31 01:52:58.145][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-31 01:52:58.146][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-31 01:52:58.147][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-31 01:52:58.149][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-31 01:52:58.150][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-31 01:52:58.151][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-31 01:52:58.153][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-31 01:52:58.154][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-31 01:52:58.155][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-31 01:52:58.157][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-31 01:52:58.158][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-31 01:52:58.160][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-31 01:52:58.161][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-31 01:52:58.163][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-31 01:52:58.164][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-31 01:52:58.165][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-31 01:52:58.167][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-31 01:52:58.168][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-31 01:52:58.169][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-31 01:52:58.171][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-31 01:52:58.172][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-31 01:52:58.173][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-31 01:52:58.175][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-31 01:52:58.176][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-31 01:52:58.177][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-31 01:52:58.179][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-31 01:52:58.180][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-31 01:52:58.182][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-31 01:52:58.183][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-31 01:52:58.184][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-31 01:52:58.186][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-31 01:52:58.187][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-31 01:52:58.188][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-31 01:52:58.190][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-31 01:52:58.191][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-31 01:52:58.193][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-31 01:52:58.202][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-31 01:52:58.205][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-31 01:52:58.208][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-31 01:52:58.211][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-31 01:52:58.213][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-31 01:52:58.216][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-31 01:52:58.219][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-31 01:52:58.222][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-31 01:52:58.225][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-31 01:52:58.228][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-31 01:52:58.230][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-31 01:52:58.233][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-31 01:52:58.235][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-31 01:52:58.238][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-05-31 01:52:58.239][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-31 01:52:58.240][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.243][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.245][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:58.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:58.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.253][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:58.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:58.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.261][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:58.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:58.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:58.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:58.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:58.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:58.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.282][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:58.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:58.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:58.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:58.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.297][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:58.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:58.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.303][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:58.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:58.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.309][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:58.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:58.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.315][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:58.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:58.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.321][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:58.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:58.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.343][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:58.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:58.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:58.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:58.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.360][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:58.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:58.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.367][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:58.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:58.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.375][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-31 01:52:58.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:58.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:58.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:58.382][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-05-31 01:52:58.383][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-05-31 01:52:58.385][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:58.386][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-05-31 01:52:58.387][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:58.388][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-31 01:52:58.389][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:58.390][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-05-31 01:52:58.391][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:58.391][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-31 01:52:58.392][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-31 01:52:58.393][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-31 01:52:58.394][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:58.395][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-05-31 01:52:58.396][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-31 01:52:58.397][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-05-31 01:52:58.397][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-05-31 01:52:58.397][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-05-31 01:52:58.397][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-05-31 01:52:58.397][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-05-31 01:52:58.397][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-05-31 01:52:58.397][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-05-31 01:52:58.397][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-05-31 01:52:58.397][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-05-31 01:52:58.397][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-05-31 01:52:58.397][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-05-31 01:52:58.397][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-05-31 01:52:58.397][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-05-31 01:52:58.397][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-05-31 01:52:58.397][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-05-31 01:52:58.397][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-05-31 01:52:58.397][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-05-31 01:52:58.397][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-05-31 01:52:58.398][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-31 01:52:58.399][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-31 01:52:58.399][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-05-31 01:52:58.399][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-05-31 01:52:58.400][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-31 01:52:58.401][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:58.402][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:58.403][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-31 01:52:58.404][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-31 01:52:58.405][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-31 01:52:58.406][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-31 01:52:58.407][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-31 01:52:58.407][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-05-31 01:52:58.408][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-31 01:52:58.409][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-31 01:52:58.409][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-31 01:52:58.410][self$setPropertyValue]
biodb.DEBUG[2024-05-31 01:52:58.412][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-05-31 01:52:58.413][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-31 01:52:58.415][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-31 01:52:58.416][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-31 01:52:58.418][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-31 01:52:58.421][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-05-31 01:52:58.422][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-05-31 01:52:58.424][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-31 01:52:58.425][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-31 01:52:58.426][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-31 01:52:58.427][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-31 01:52:58.429][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-05-31 01:52:58.429][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-05-31 01:52:58.430][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-31 01:52:58.430][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-05-31 01:52:58.431][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-31 01:52:58.432][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-31 01:52:58.433][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-05-31 01:52:58.434][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-05-31 01:52:58.435][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-31 01:52:58.436][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-31 01:52:58.437][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-31 01:52:58.438][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-31 01:52:58.440][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-31 01:52:58.441][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-31 01:52:58.442][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-05-31 01:52:58.443][biodb::testThat]
biodb.INFO [2024-05-31 01:52:58.444][biodb::testThat] Running test function test.searchMultipleWordsInDescription (" We can search for multiple words inside description field. ").
biodb.INFO [2024-05-31 01:52:58.450][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-31 01:52:58.451][biodb::testThat]
biodb.DEBUG[2024-05-31 01:52:58.454][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-05-31 01:52:58.455][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-05-31 01:52:58.456][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-05-31 01:52:58.459][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:58.460][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:58.462][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-31 01:52:58.463][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:58.464][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-31 01:52:58.465][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-31 01:52:58.466][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-31 01:52:58.467][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-31 01:52:58.468][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-31 01:52:58.469][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-31 01:52:58.470][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2024-05-31 01:52:58.471][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-05-31 01:52:58.472][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-31 01:52:58.474][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:58.475][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-31 01:52:58.477][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-05-31 01:52:58.479][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-31 01:52:58.480][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-05-31 01:52:58.482][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-31 01:52:58.483][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-31 01:52:58.484][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-31 01:52:58.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-31 01:52:58.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:58.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:58.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:58.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:58.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:58.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-31 01:52:58.500][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:58.501][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:58.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.503][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:58.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:58.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.508][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:58.509][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:58.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.511][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.512][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:58.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:58.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.517][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:58.518][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:58.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.520][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.521][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:58.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:58.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.525][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:58.526][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:58.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.528][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.529][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:58.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:58.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.533][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:58.534][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:58.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.536][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:58.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:58.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.542][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:58.543][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:58.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.544][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:58.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:58.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.550][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:58.551][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:58.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.553][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.555][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:58.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:58.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.564][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:58.565][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:58.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.567][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:58.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:58.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.572][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:58.573][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:58.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.575][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.576][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:58.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:58.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.580][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:58.581][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:58.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.583][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:58.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:58.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.589][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:58.590][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:58.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.592][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.593][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:58.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:58.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.597][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:58.598][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:58.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.600][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:58.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:58.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.606][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:58.607][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:58.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.609][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:58.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:58.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.614][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:58.615][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:58.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.617][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:58.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:58.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.623][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:58.624][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:58.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.626][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.627][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:58.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:58.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.631][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:58.632][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:58.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.634][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.636][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:58.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:58.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.640][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:58.641][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:58.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.643][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:58.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:58.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.649][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-05-31 01:52:58.650][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:58.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.651][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.653][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-05-31 01:52:58.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:58.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:58.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:58.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:58.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:58.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:58.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:58.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.674][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:58.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:58.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.678][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:58.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:58.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.682][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:58.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:58.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.686][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:58.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:58.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.689][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:58.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:58.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.693][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:58.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:58.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:58.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:58.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:58.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:58.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:58.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:58.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:58.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:58.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:58.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:58.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:58.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:58.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:58.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:58.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:58.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:58.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:58.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:58.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:58.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:58.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:58.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:58.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:58.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:58.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:58.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:58.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:58.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:58.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:58.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:58.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.755][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:58.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:58.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.759][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:58.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:58.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.763][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:58.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:58.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.780][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:58.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:58.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.785][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:58.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:58.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.788][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:58.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:58.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.792][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:58.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:58.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:58.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:58.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.800][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:58.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:58.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:58.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:58.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:58.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:58.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.811][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:58.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:58.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.815][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:58.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:58.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.819][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:58.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:58.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.823][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:58.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:58.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:58.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:58.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:58.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:58.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:58.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:58.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:58.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:58.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.843][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:58.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:58.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.846][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:58.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:58.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.850][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:58.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:58.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:58.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:58.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:58.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:58.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.862][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:58.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:58.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.866][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:58.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:58.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.870][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:58.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:58.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.874][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:58.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:58.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.883][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:58.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:58.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.887][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:58.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:58.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.892][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-31 01:52:58.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:58.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:58.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:58.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:58.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:58.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.903][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:58.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:58.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.907][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-31 01:52:58.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:58.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.912][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:58.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:58.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.916][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:58.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:58.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.920][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:58.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:58.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.924][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:58.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:58.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.927][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:58.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:58.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.931][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:58.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:58.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.935][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:58.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:58.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:58.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:58.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.943][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:58.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:58.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:58.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:58.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:58.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:58.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:58.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:58.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:58.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:58.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:58.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:58.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:58.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:58.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-31 01:52:58.971][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-05-31 01:52:58.972][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:58.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:58.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.976][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:58.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:58.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.980][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:58.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:58.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:58.984][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:58.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:58.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:58.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-31 01:52:58.995][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-31 01:52:58.996][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-31 01:52:58.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-31 01:52:58.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:59.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:59.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:59.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:59.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:59.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:59.008][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-05-31 01:52:59.009][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-31 01:52:59.011][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:59.013][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-31 01:52:59.015][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-05-31 01:52:59.016][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-31 01:52:59.017][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-05-31 01:52:59.018][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-31 01:52:59.020][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-31 01:52:59.021][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-31 01:52:59.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-31 01:52:59.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:59.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:59.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:59.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:59.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:59.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-31 01:52:59.034][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:59.036][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:59.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.037][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:59.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:59.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.043][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:59.044][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:59.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.045][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.047][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:59.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:59.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.051][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:59.052][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:59.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.054][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.055][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:59.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:59.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.059][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:59.060][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:59.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.062][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.064][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:59.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:59.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.068][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:59.069][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:59.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.072][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:59.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:59.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.079][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:59.081][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:59.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.083][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:59.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:59.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.091][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:59.092][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:59.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.094][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.095][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:59.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:59.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.099][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:59.100][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:59.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.102][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:59.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:59.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.114][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:59.116][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:59.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.118][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:59.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:59.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.125][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:59.126][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:59.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.127][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:59.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:59.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.133][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:59.134][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:59.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.136][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.137][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:59.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:59.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.141][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:59.142][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:59.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.144][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:59.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:59.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.150][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:59.151][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:59.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.153][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:59.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:59.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.158][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:59.159][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:59.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.161][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:59.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:59.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.167][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:59.168][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:59.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.170][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:59.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:59.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.176][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.177][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.179][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.180][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.184][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:59.185][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:59.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.187][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:59.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:59.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.193][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-05-31 01:52:59.194][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:59.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.196][ef$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.198][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-05-31 01:52:59.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:59.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:59.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:59.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:59.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:59.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:59.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:59.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.214][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:59.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:59.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.218][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:59.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:59.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.222][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-31 01:52:59.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-31 01:52:59.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.233][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:59.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:59.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.237][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:59.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:59.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.241][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-31 01:52:59.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-31 01:52:59.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:59.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:59.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:59.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:59.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-31 01:52:59.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-31 01:52:59.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:59.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:59.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:59.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:59.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:59.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-31 01:52:59.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:59.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:59.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:59.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:59.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:59.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-31 01:52:59.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:59.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:59.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:59.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:59.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:59.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-31 01:52:59.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:59.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:59.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:59.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:59.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:59.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-31 01:52:59.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.302][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.306][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.310][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.314][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:59.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:59.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.317][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:59.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:59.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.321][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-31 01:52:59.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-31 01:52:59.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:59.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:59.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:59.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:59.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-31 01:52:59.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-31 01:52:59.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:59.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:59.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:59.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:59.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:59.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:59.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.355][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:59.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:59.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.359][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:59.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:59.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.363][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:59.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-31 01:52:59.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:59.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:59.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:59.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:59.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:59.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-31 01:52:59.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.378][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:59.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:59.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.382][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:59.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:59.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:59.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:59.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.390][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:59.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:59.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.394][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:59.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:59.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.398][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:59.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-31 01:52:59.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.402][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:59.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:59.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.406][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:59.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:59.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.410][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:59.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-31 01:52:59.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:59.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:59.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.418][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:59.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:59.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.422][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-31 01:52:59.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-31 01:52:59.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.425][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-31 01:52:59.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:59.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.429][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:59.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:59.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:59.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:59.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-31 01:52:59.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:59.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.448][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-31 01:52:59.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-31 01:52:59.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.453][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:59.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:59.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.457][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:59.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:59.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.460][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:59.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:59.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.464][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:59.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:59.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.468][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-31 01:52:59.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-31 01:52:59.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.477][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:59.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:59.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.481][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:59.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:59.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:59.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:59.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.490][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:59.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-31 01:52:59.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:59.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:59.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:59.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:59.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:59.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:59.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:59.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:59.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:59.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:59.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-31 01:52:59.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-31 01:52:59.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-31 01:52:59.520][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-05-31 01:52:59.521][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.526][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.530][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.535][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-31 01:52:59.539][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-31 01:52:59.540][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2024-05-31 01:52:59.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-31 01:52:59.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:59.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:59.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:59.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:59.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:59.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:59.579][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-05-31 01:52:59.581][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-05-31 01:52:59.582][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-05-31 01:52:59.585][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:59.587][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:59.588][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-31 01:52:59.590][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:59.591][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-31 01:52:59.592][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-31 01:52:59.593][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-31 01:52:59.594][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-31 01:52:59.596][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-31 01:52:59.597][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-31 01:52:59.598][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-31 01:52:59.600][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.604][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.608][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.612][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.616][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.620][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.624][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-31 01:52:59.627][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-31 01:52:59.628][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-31 01:52:59.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-31 01:52:59.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:59.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:59.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:59.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:59.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:59.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-31 01:52:59.640][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.644][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.648][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.651][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.655][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.659][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.663][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-31 01:52:59.667][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-05-31 01:52:59.668][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-31 01:52:59.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-31 01:52:59.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:59.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:59.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:59.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:59.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:59.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-31 01:52:59.683][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-05-31 01:52:59.691][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-05-31 01:52:59.693][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-05-31 01:52:59.695][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:59.697][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:59.699][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-31 01:52:59.701][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-31 01:52:59.702][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-31 01:52:59.703][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-31 01:52:59.704][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-31 01:52:59.705][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-31 01:52:59.706][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-31 01:52:59.707][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-31 01:52:59.708][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-31 01:52:59.710][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.714][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.718][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.722][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.727][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.731][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.735][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-31 01:52:59.739][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-05-31 01:52:59.740][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2024-05-31 01:52:59.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-31 01:52:59.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:59.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:59.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:59.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:59.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:59.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-31 01:52:59.752][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.757][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.761][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.765][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.770][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.774][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-31 01:52:59.778][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-31 01:52:59.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-31 01:52:59.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-31 01:52:59.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-31 01:52:59.782][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-31 01:52:59.783][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-31 01:52:59.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-31 01:52:59.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:59.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:59.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:59.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:59.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:59.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-05-31 01:52:59.802][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-31 01:52:59.804][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-05-31 01:52:59.811][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-05-31 01:52:59.812][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-31 01:52:59.813][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-31 01:52:59.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-31 01:52:59.815][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-31 01:52:59.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-31 01:52:59.817][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-31 01:52:59.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
>
> proc.time()
user system elapsed
8.968 0.482 10.854