Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-07-24 11:39 -0400 (Wed, 24 Jul 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4688 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4284 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4455 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4404 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1311/2248 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
MsBackendRawFileReader 1.11.3 (landing page) Christian Panse
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | ERROR | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | ERROR | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | ERROR | OK | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
To the developers/maintainers of the MsBackendRawFileReader package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MsBackendRawFileReader.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: MsBackendRawFileReader |
Version: 1.11.3 |
Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:MsBackendRawFileReader.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings MsBackendRawFileReader_1.11.3.tar.gz |
StartedAt: 2024-07-24 02:05:51 -0400 (Wed, 24 Jul 2024) |
EndedAt: 2024-07-24 02:12:00 -0400 (Wed, 24 Jul 2024) |
EllapsedTime: 369.4 seconds |
RetCode: 1 |
Status: ERROR |
CheckDir: MsBackendRawFileReader.Rcheck |
Warnings: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:MsBackendRawFileReader.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings MsBackendRawFileReader_1.11.3.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/MsBackendRawFileReader.Rcheck' * using R version 4.4.1 (2024-06-14 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'MsBackendRawFileReader/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'MsBackendRawFileReader' version '1.11.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'MsBackendRawFileReader' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed ioBenchmark 9.03 1.97 53.72 MsBackendRawFileReader 1.21 0.10 42.82 MsBackendRawFileReader-class 0.89 0.06 14.00 hidden_aliases 0.27 0.00 12.44 * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' ERROR Running the tests in 'tests/testthat.R' failed. Last 13 lines of output: ── Skipped tests (1) ─────────────────────────────────────────────────────────── • empty test (1): 'test_spectra_variables.R:262:1' ── Failed tests ──────────────────────────────────────────────────────────────── Failure ('test_peaks_variables.R:16:5'): peaksData columns and peaksVariables match colnames(res[[1L]]) not equal to peaksVariables(be). Lengths differ: 5 is not 2 Failure ('test_spectra_variables.R:205:5'): peaksData colnames(m) not equal to c("mz", "intensity"). Lengths differ: 5 is not 2 [ FAIL 2 | WARN 0 | SKIP 1 | PASS 2381 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 ERROR See 'F:/biocbuild/bbs-3.20-bioc/meat/MsBackendRawFileReader.Rcheck/00check.log' for details.
MsBackendRawFileReader.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL MsBackendRawFileReader ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'MsBackendRawFileReader' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MsBackendRawFileReader)
MsBackendRawFileReader.Rcheck/tests/testthat.Rout.fail
R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library("testthat") > library("MsBackendRawFileReader") Loading required package: Spectra Loading required package: S4Vectors Loading required package: stats4 Loading required package: BiocGenerics Attaching package: 'BiocGenerics' The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply, union, unique, unsplit, which.max, which.min Attaching package: 'S4Vectors' The following object is masked from 'package:utils': findMatches The following objects are masked from 'package:base': I, expand.grid, unname Loading required package: BiocParallel Loading required package: ProtGenerics Attaching package: 'ProtGenerics' The following object is masked from 'package:stats': smooth > library("Spectra") > > > sample_raw_file <- file.path(system.file(package = "rawrr"), + 'extdata', 'sample.raw') > > sample_mzXML_file <- file.path(path.package(package = 'MsBackendRawFileReader'), + 'extdata', 'sample.mzXML') > > > sample_raw <- backendInitialize(MsBackendRawFileReader::MsBackendRawFileReader(), files = sample_raw_file) > > > #sample_mzr <- backendInitialize(MsBackendMzR(), files = sample_mzXML_file) > > > mgf_file <- file.path(system.file(package = "MsBackendRawFileReader"), + 'extdata', '3159619b11ed_4590_9594.mgf') > > > rv <- lapply(1:2, function(x){ + file.copy(from = sample_raw_file, to = tempfile(fileext='.raw'))}) > > > register(SnowParam(workers = 1, type = "SOCK") , default = TRUE); > sample_raw_2 <- backendInitialize(MsBackendRawFileReader(), + files = file.path(tempdir(), + list.files(path = tempdir(), pattern = 'raw$'))) > > > test_check("MsBackendRawFileReader") [ FAIL 0 | WARN 1 | SKIP 2 | PASS 21 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • isFALSE(file.exists(sample_mzXML_file)) is TRUE (1): 'test_MsBackendMzR_MsBackendRawFileReader.R:1:1' • isFALSE(require(MsBackendRawMgf)) is TRUE (1): 'test_top_n_mgf.R:1:1' [ FAIL 0 | WARN 1 | SKIP 2 | PASS 21 ] > > > be <- Spectra::backendInitialize(MsBackendRawFileReader::MsBackendRawFileReader(), + files = c(sample_raw_file)) > > ## Run the MsBackend spectra variable test suite > test_suite <- system.file("test_backends", "test_MsBackend", + package = "Spectra") > > #res <- test_file(paste0(test_suite, "/test_spectra_variables.R"), > # reporter = check_reporter(), stop_on_failure = TRUE) > > > ## Run the whole suite. > res <- test_dir(test_suite, stop_on_failure = TRUE) ✔ | F W S OK | Context ⠏ | 0 | peaks_variables ⠙ | 2 | peaks_variables ⠸ | 1 3 | peaks_variables ✖ | 1 3 | peaks_variables [6.8s] ──────────────────────────────────────────────────────────────────────────────── Failure ('test_peaks_variables.R:16:5'): peaksData columns and peaksVariables match colnames(res[[1L]]) not equal to peaksVariables(be). Lengths differ: 5 is not 2 ──────────────────────────────────────────────────────────────────────────────── ⠏ | 0 | spectra_subsetting ⠋ | 1 | spectra_subsetting ⠏ | 10 | spectra_subsetting ⠙ | 22 | spectra_subsetting ⠸ | 34 | spectra_subsetting ⠹ | 43 | spectra_subsetting ⠼ | 55 | spectra_subsetting ⠦ | 67 | spectra_subsetting ⠴ | 76 | spectra_subsetting ⠼ | 85 | spectra_subsetting ⠸ | 94 | spectra_subsetting ⠹ | 103 | spectra_subsetting ⠙ | 112 | spectra_subsetting ⠋ | 121 | spectra_subsetting ⠧ | 128 | spectra_subsetting ⠴ | 136 | spectra_subsetting ⠴ | 146 | spectra_subsetting ⠦ | 157 | spectra_subsetting ⠴ | 166 | spectra_subsetting ⠋ | 181 | spectra_subsetting ⠋ | 191 | spectra_subsetting ⠇ | 199 | spectra_subsetting ⠋ | 211 | spectra_subsetting ⠹ | 223 | spectra_subsetting ⠼ | 235 | spectra_subsetting ⠸ | 244 | spectra_subsetting ⠸ | 254 | spectra_subsetting ⠙ | 262 | spectra_subsetting ⠏ | 270 | spectra_subsetting ⠧ | 278 | spectra_subsetting ⠴ | 286 | spectra_subsetting ⠼ | 295 | spectra_subsetting ⠋ | 301 | spectra_subsetting ⠹ | 313 | spectra_subsetting ⠹ | 323 | spectra_subsetting ⠸ | 334 | spectra_subsetting ⠴ | 346 | spectra_subsetting ⠧ | 358 | spectra_subsetting ⠦ | 367 | spectra_subsetting ⠸ | 374 | spectra_subsetting ⠹ | 383 | spectra_subsetting ⠸ | 394 | spectra_subsetting ⠴ | 406 | spectra_subsetting ⠧ | 418 | spectra_subsetting ⠹ | 433 | spectra_subsetting ⠼ | 445 | spectra_subsetting ⠋ | 461 | spectra_subsetting ⠋ | 471 | spectra_subsetting ⠧ | 478 | spectra_subsetting ⠹ | 493 | spectra_subsetting ⠼ | 505 | spectra_subsetting ⠦ | 517 | spectra_subsetting ⠇ | 529 | spectra_subsetting ⠧ | 538 | spectra_subsetting ⠦ | 547 | spectra_subsetting ⠇ | 559 | spectra_subsetting ⠇ | 569 | spectra_subsetting ⠏ | 580 | spectra_subsetting ⠼ | 595 | spectra_subsetting ⠸ | 604 | spectra_subsetting ⠋ | 611 | spectra_subsetting ⠏ | 620 | spectra_subsetting ⠇ | 629 | spectra_subsetting ⠏ | 640 | spectra_subsetting ⠙ | 652 | spectra_subsetting ⠼ | 665 | spectra_subsetting ⠸ | 674 | spectra_subsetting ⠼ | 685 | spectra_subsetting ⠸ | 694 | spectra_subsetting ⠹ | 703 | spectra_subsetting ⠹ | 713 | spectra_subsetting ⠦ | 727 | spectra_subsetting ⠇ | 739 | spectra_subsetting ⠇ | 749 | spectra_subsetting ⠹ | 763 | spectra_subsetting ⠧ | 778 | spectra_subsetting ⠏ | 790 | spectra_subsetting ⠼ | 805 | spectra_subsetting ⠼ | 815 | spectra_subsetting ⠧ | 828 | spectra_subsetting ⠧ | 838 | spectra_subsetting ⠏ | 850 | spectra_subsetting ⠙ | 862 | spectra_subsetting ⠋ | 871 | spectra_subsetting ⠏ | 880 | spectra_subsetting ⠇ | 889 | spectra_subsetting ⠧ | 898 | spectra_subsetting ⠦ | 907 | spectra_subsetting ⠦ | 917 | spectra_subsetting ⠼ | 925 | spectra_subsetting ⠸ | 934 | spectra_subsetting ⠸ | 944 | spectra_subsetting ⠙ | 952 | spectra_subsetting ⠋ | 961 | spectra_subsetting ⠏ | 970 | spectra_subsetting ⠇ | 979 | spectra_subsetting ⠴ | 986 | spectra_subsetting ⠦ | 997 | spectra_subsetting ⠴ | 1006 | spectra_subsetting ⠴ | 1016 | spectra_subsetting ⠸ | 1024 | spectra_subsetting ⠦ | 1037 | spectra_subsetting ⠧ | 1048 | spectra_subsetting ⠦ | 1057 | spectra_subsetting ⠴ | 1066 | spectra_subsetting ⠦ | 1077 | spectra_subsetting ⠸ | 1084 | spectra_subsetting ⠹ | 1093 | spectra_subsetting ⠴ | 1106 | spectra_subsetting ⠼ | 1115 | spectra_subsetting ⠼ | 1125 | spectra_subsetting ⠴ | 1136 | spectra_subsetting ⠦ | 1147 | spectra_subsetting ⠴ | 1156 | spectra_subsetting ⠼ | 1165 | spectra_subsetting ⠦ | 1177 | spectra_subsetting ⠴ | 1186 | spectra_subsetting ⠼ | 1195 | spectra_subsetting ⠦ | 1207 | spectra_subsetting ⠇ | 1219 | spectra_subsetting ⠧ | 1228 | spectra_subsetting ⠦ | 1237 | spectra_subsetting ⠇ | 1249 | spectra_subsetting ⠧ | 1258 | spectra_subsetting ⠋ | 1271 | spectra_subsetting ⠼ | 1285 | spectra_subsetting ⠸ | 1294 | spectra_subsetting ⠴ | 1306 | spectra_subsetting ⠧ | 1318 | spectra_subsetting ⠧ | 1328 | spectra_subsetting ⠋ | 1341 | spectra_subsetting ⠋ | 1351 | spectra_subsetting ⠧ | 1358 | spectra_subsetting ⠴ | 1366 | spectra_subsetting ⠧ | 1378 | spectra_subsetting ⠏ | 1390 | spectra_subsetting ⠙ | 1402 | spectra_subsetting ⠋ | 1411 | spectra_subsetting ⠏ | 1420 | spectra_subsetting ⠧ | 1428 | spectra_subsetting ⠏ | 1440 | spectra_subsetting ⠏ | 1450 | spectra_subsetting ⠏ | 1460 | spectra_subsetting ⠧ | 1468 | spectra_subsetting ⠹ | 1483 | spectra_subsetting ⠙ | 1492 | spectra_subsetting ⠋ | 1501 | spectra_subsetting ⠹ | 1513 | spectra_subsetting ⠼ | 1525 | spectra_subsetting ⠸ | 1534 | spectra_subsetting ⠴ | 1546 | spectra_subsetting ⠼ | 1555 | spectra_subsetting ⠸ | 1564 | spectra_subsetting ⠹ | 1573 | spectra_subsetting ⠸ | 1584 | spectra_subsetting ⠸ | 1594 | spectra_subsetting ⠋ | 1601 | spectra_subsetting ⠏ | 1610 | spectra_subsetting ⠸ | 1624 | spectra_subsetting ⠹ | 1633 | spectra_subsetting ⠼ | 1645 | spectra_subsetting ⠙ | 1652 | spectra_subsetting ⠏ | 1660 | spectra_subsetting ⠦ | 1667 | spectra_subsetting ⠦ | 1677 | spectra_subsetting ⠦ | 1687 | spectra_subsetting ⠼ | 1695 | spectra_subsetting ⠙ | 1702 | spectra_subsetting ⠼ | 1715 | spectra_subsetting ⠦ | 1727 | spectra_subsetting ⠇ | 1729 | spectra_subsetting ⠏ | 1730 | spectra_subsetting ⠙ | 1732 | spectra_subsetting ⠸ | 1734 | spectra_subsetting ⠴ | 1736 | spectra_subsetting ⠧ | 1738 | spectra_subsetting ⠏ | 1740 | spectra_subsetting ⠙ | 1742 | spectra_subsetting ⠸ | 1744 | spectra_subsetting ⠴ | 1746 | spectra_subsetting ⠧ | 1748 | spectra_subsetting ⠏ | 1750 | spectra_subsetting ⠙ | 1752 | spectra_subsetting ⠸ | 1754 | spectra_subsetting ⠴ | 1756 | spectra_subsetting ⠦ | 1757 | spectra_subsetting ⠇ | 1759 | spectra_subsetting ⠋ | 1761 | spectra_subsetting ⠸ | 1764 | spectra_subsetting ⠴ | 1766 | spectra_subsetting ⠧ | 1768 | spectra_subsetting ⠇ | 1769 | spectra_subsetting ⠋ | 1771 | spectra_subsetting ⠹ | 1773 | spectra_subsetting ⠼ | 1775 | spectra_subsetting ⠦ | 1777 | spectra_subsetting ⠇ | 1779 | spectra_subsetting ⠋ | 1781 | spectra_subsetting ⠹ | 1783 | spectra_subsetting ⠸ | 1784 | spectra_subsetting ⠴ | 1786 | spectra_subsetting ⠦ | 1787 | spectra_subsetting ⠇ | 1789 | spectra_subsetting ⠋ | 1791 | spectra_subsetting ⠹ | 1793 | spectra_subsetting ⠼ | 1795 | spectra_subsetting ⠦ | 1797 | spectra_subsetting ⠇ | 1799 | spectra_subsetting ⠏ | 1800 | spectra_subsetting ⠙ | 1802 | spectra_subsetting ⠸ | 1804 | spectra_subsetting ⠴ | 1806 | spectra_subsetting ⠧ | 1808 | spectra_subsetting ⠏ | 1810 | spectra_subsetting ⠙ | 1812 | spectra_subsetting ⠸ | 1814 | spectra_subsetting ⠴ | 1816 | spectra_subsetting ⠧ | 1818 | spectra_subsetting ⠏ | 1820 | spectra_subsetting ⠙ | 1822 | spectra_subsetting ⠹ | 1823 | spectra_subsetting ⠼ | 1825 | spectra_subsetting ⠦ | 1827 | spectra_subsetting ⠇ | 1829 | spectra_subsetting ⠋ | 1831 | spectra_subsetting ⠹ | 1833 | spectra_subsetting ⠼ | 1835 | spectra_subsetting ⠦ | 1837 | spectra_subsetting ⠇ | 1839 | spectra_subsetting ⠋ | 1841 | spectra_subsetting ⠹ | 1843 | spectra_subsetting ⠼ | 1845 | spectra_subsetting ⠦ | 1847 | spectra_subsetting ⠇ | 1849 | spectra_subsetting ⠏ | 1850 | spectra_subsetting ⠙ | 1852 | spectra_subsetting ⠸ | 1854 | spectra_subsetting ⠴ | 1856 | spectra_subsetting ⠧ | 1858 | spectra_subsetting ⠋ | 1861 | spectra_subsetting ⠹ | 1863 | spectra_subsetting ⠼ | 1865 | spectra_subsetting ⠦ | 1867 | spectra_subsetting ⠏ | 1870 | spectra_subsetting ⠙ | 1872 | spectra_subsetting ⠸ | 1874 | spectra_subsetting ⠴ | 1876 | spectra_subsetting ⠧ | 1878 | spectra_subsetting ⠏ | 1880 | spectra_subsetting ⠙ | 1882 | spectra_subsetting ⠼ | 1885 | spectra_subsetting ⠦ | 1887 | spectra_subsetting ⠇ | 1889 | spectra_subsetting ⠋ | 1891 | spectra_subsetting ⠙ | 1892 | spectra_subsetting ⠸ | 1894 | spectra_subsetting ⠴ | 1896 | spectra_subsetting ⠧ | 1898 | spectra_subsetting ⠏ | 1900 | spectra_subsetting ⠙ | 1902 | spectra_subsetting ⠸ | 1904 | spectra_subsetting ⠴ | 1906 | spectra_subsetting ⠧ | 1908 | spectra_subsetting ⠏ | 1910 | spectra_subsetting ⠙ | 1912 | spectra_subsetting ⠸ | 1914 | spectra_subsetting ⠴ | 1916 | spectra_subsetting ⠧ | 1918 | spectra_subsetting ⠏ | 1920 | spectra_subsetting ⠙ | 1922 | spectra_subsetting ⠸ | 1924 | spectra_subsetting ⠴ | 1926 | spectra_subsetting ⠧ | 1928 | spectra_subsetting ⠏ | 1930 | spectra_subsetting ⠙ | 1932 | spectra_subsetting ⠸ | 1934 | spectra_subsetting ⠴ | 1936 | spectra_subsetting ⠧ | 1938 | spectra_subsetting ⠏ | 1940 | spectra_subsetting ⠙ | 1942 | spectra_subsetting ⠸ | 1944 | spectra_subsetting ⠴ | 1946 | spectra_subsetting ⠧ | 1948 | spectra_subsetting ⠏ | 1950 | spectra_subsetting ⠙ | 1952 | spectra_subsetting ⠸ | 1954 | spectra_subsetting ⠴ | 1956 | spectra_subsetting ⠧ | 1958 | spectra_subsetting ⠏ | 1960 | spectra_subsetting ⠙ | 1962 | spectra_subsetting ⠸ | 1964 | spectra_subsetting ⠴ | 1966 | spectra_subsetting ⠧ | 1968 | spectra_subsetting ⠏ | 1970 | spectra_subsetting ⠙ | 1972 | spectra_subsetting ⠸ | 1974 | spectra_subsetting ⠴ | 1976 | spectra_subsetting ⠧ | 1978 | spectra_subsetting ⠏ | 1980 | spectra_subsetting ⠙ | 1982 | spectra_subsetting ⠼ | 1985 | spectra_subsetting ⠧ | 1988 | spectra_subsetting ⠏ | 1990 | spectra_subsetting ⠙ | 1992 | spectra_subsetting ⠸ | 1994 | spectra_subsetting ⠴ | 1996 | spectra_subsetting ⠧ | 1998 | spectra_subsetting ⠏ | 2000 | spectra_subsetting ⠙ | 2002 | spectra_subsetting ⠸ | 2004 | spectra_subsetting ⠴ | 2006 | spectra_subsetting ⠧ | 2008 | spectra_subsetting ⠏ | 2010 | spectra_subsetting ⠙ | 2012 | spectra_subsetting ⠸ | 2014 | spectra_subsetting ⠴ | 2016 | spectra_subsetting ⠧ | 2018 | spectra_subsetting ⠏ | 2020 | spectra_subsetting ⠙ | 2022 | spectra_subsetting ⠸ | 2024 | spectra_subsetting ⠴ | 2026 | spectra_subsetting ⠧ | 2028 | spectra_subsetting ⠏ | 2030 | spectra_subsetting ⠙ | 2032 | spectra_subsetting ⠸ | 2034 | spectra_subsetting ⠴ | 2036 | spectra_subsetting ⠇ | 2039 | spectra_subsetting ⠋ | 2041 | spectra_subsetting ⠹ | 2043 | spectra_subsetting ⠼ | 2045 | spectra_subsetting ⠦ | 2047 | spectra_subsetting ⠏ | 2050 | spectra_subsetting ⠙ | 2052 | spectra_subsetting ⠸ | 2054 | spectra_subsetting ⠴ | 2056 | spectra_subsetting ⠧ | 2058 | spectra_subsetting ⠏ | 2060 | spectra_subsetting ⠙ | 2062 | spectra_subsetting ⠸ | 2064 | spectra_subsetting ⠴ | 2066 | spectra_subsetting ⠧ | 2068 | spectra_subsetting ⠏ | 2070 | spectra_subsetting ⠙ | 2072 | spectra_subsetting ⠸ | 2074 | spectra_subsetting ⠴ | 2076 | spectra_subsetting ⠧ | 2078 | spectra_subsetting ⠏ | 2080 | spectra_subsetting ⠙ | 2082 | spectra_subsetting ⠸ | 2084 | spectra_subsetting ⠴ | 2086 | spectra_subsetting ⠧ | 2088 | spectra_subsetting ⠏ | 2090 | spectra_subsetting ⠙ | 2092 | spectra_subsetting ⠸ | 2094 | spectra_subsetting ⠴ | 2096 | spectra_subsetting ⠦ | 2097 | spectra_subsetting ⠇ | 2099 | spectra_subsetting ⠋ | 2101 | spectra_subsetting ⠹ | 2103 | spectra_subsetting ⠼ | 2105 | spectra_subsetting ⠦ | 2107 | spectra_subsetting ⠇ | 2109 | spectra_subsetting ⠋ | 2111 | spectra_subsetting ⠹ | 2113 | spectra_subsetting ⠼ | 2115 | spectra_subsetting ⠦ | 2117 | spectra_subsetting ⠇ | 2119 | spectra_subsetting ⠋ | 2121 | spectra_subsetting ⠹ | 2123 | spectra_subsetting ⠼ | 2125 | spectra_subsetting ⠦ | 2127 | spectra_subsetting ⠇ | 2129 | spectra_subsetting ⠋ | 2131 | spectra_subsetting ⠹ | 2133 | spectra_subsetting ⠼ | 2135 | spectra_subsetting ⠦ | 2137 | spectra_subsetting ⠇ | 2139 | spectra_subsetting ⠋ | 2141 | spectra_subsetting ⠹ | 2143 | spectra_subsetting ⠼ | 2145 | spectra_subsetting ⠦ | 2147 | spectra_subsetting ⠇ | 2149 | spectra_subsetting ⠋ | 2151 | spectra_subsetting ⠹ | 2153 | spectra_subsetting ⠼ | 2155 | spectra_subsetting ⠦ | 2157 | spectra_subsetting ⠇ | 2159 | spectra_subsetting ⠙ | 2162 | spectra_subsetting ⠼ | 2165 | spectra_subsetting ⠦ | 2167 | spectra_subsetting ⠇ | 2169 | spectra_subsetting ⠋ | 2171 | spectra_subsetting ⠹ | 2173 | spectra_subsetting ⠼ | 2175 | spectra_subsetting ⠦ | 2177 | spectra_subsetting ⠇ | 2179 | spectra_subsetting ⠋ | 2181 | spectra_subsetting ⠹ | 2183 | spectra_subsetting ⠼ | 2185 | spectra_subsetting ⠦ | 2187 | spectra_subsetting ⠇ | 2189 | spectra_subsetting ⠋ | 2191 | spectra_subsetting ⠹ | 2193 | spectra_subsetting ⠼ | 2195 | spectra_subsetting ⠦ | 2197 | spectra_subsetting ⠇ | 2199 | spectra_subsetting ⠋ | 2201 | spectra_subsetting ⠹ | 2203 | spectra_subsetting ⠼ | 2205 | spectra_subsetting ⠦ | 2207 | spectra_subsetting ⠇ | 2209 | spectra_subsetting ⠋ | 2211 | spectra_subsetting ⠹ | 2213 | spectra_subsetting ⠼ | 2215 | spectra_subsetting ⠦ | 2217 | spectra_subsetting ⠇ | 2219 | spectra_subsetting ⠋ | 2221 | spectra_subsetting ⠹ | 2223 | spectra_subsetting ⠼ | 2225 | spectra_subsetting ⠦ | 2227 | spectra_subsetting ⠇ | 2229 | spectra_subsetting ⠋ | 2231 | spectra_subsetting ⠹ | 2233 | spectra_subsetting ⠼ | 2235 | spectra_subsetting ⠦ | 2237 | spectra_subsetting ⠇ | 2239 | spectra_subsetting ⠋ | 2241 | spectra_subsetting ⠹ | 2243 | spectra_subsetting ⠼ | 2245 | spectra_subsetting ⠦ | 2247 | spectra_subsetting ⠇ | 2249 | spectra_subsetting ⠋ | 2251 | spectra_subsetting ⠹ | 2253 | spectra_subsetting ⠼ | 2255 | spectra_subsetting ⠦ | 2257 | spectra_subsetting ⠇ | 2259 | spectra_subsetting ⠋ | 2261 | spectra_subsetting ⠹ | 2263 | spectra_subsetting ⠼ | 2265 | spectra_subsetting ⠦ | 2267 | spectra_subsetting ⠇ | 2269 | spectra_subsetting ⠋ | 2271 | spectra_subsetting ⠹ | 2273 | spectra_subsetting ⠼ | 2275 | spectra_subsetting ⠦ | 2277 | spectra_subsetting ⠇ | 2279 | spectra_subsetting ⠋ | 2281 | spectra_subsetting ⠹ | 2283 | spectra_subsetting ⠼ | 2285 | spectra_subsetting ⠦ | 2287 | spectra_subsetting ⠇ | 2289 | spectra_subsetting ⠋ | 2291 | spectra_subsetting ⠹ | 2293 | spectra_subsetting ⠼ | 2295 | spectra_subsetting ⠦ | 2297 | spectra_subsetting ⠇ | 2299 | spectra_subsetting ⠹ | 2303 | spectra_subsetting ⠇ | 2309 | spectra_subsetting ⠹ | 2313 | spectra_subsetting ⠦ | 2317 | spectra_subsetting ✔ | 2317 | spectra_subsetting [64.4s] ⠏ | 0 | spectra_variables ⠙ | 12 | spectra_variables ⠸ | 14 | spectra_variables ⠴ | 16 | spectra_variables ⠦ | 27 | spectra_variables ⠇ | 29 | spectra_variables ⠋ | 31 | spectra_variables ⠹ | 43 | spectra_variables ⠸ | 1 53 | spectra_variables ✖ | 1 1 61 | spectra_variables [24.4s] ──────────────────────────────────────────────────────────────────────────────── Failure ('test_spectra_variables.R:205:5'): peaksData colnames(m) not equal to c("mz", "intensity"). Lengths differ: 5 is not 2 ──────────────────────────────────────────────────────────────────────────────── ══ Results ═════════════════════════════════════════════════════════════════════ Duration: 95.6 s ── Skipped tests (1) ─────────────────────────────────────────────────────────── • empty test (1): 'test_spectra_variables.R:262:1' ── Failed tests ──────────────────────────────────────────────────────────────── Failure ('test_peaks_variables.R:16:5'): peaksData columns and peaksVariables match colnames(res[[1L]]) not equal to peaksVariables(be). Lengths differ: 5 is not 2 Failure ('test_spectra_variables.R:205:5'): peaksData colnames(m) not equal to c("mz", "intensity"). Lengths differ: 5 is not 2 [ FAIL 2 | WARN 0 | SKIP 1 | PASS 2381 ] Error: Test failures Execution halted
MsBackendRawFileReader.Rcheck/MsBackendRawFileReader-Ex.timings
name | user | system | elapsed | |
MsBackendRawFileReader-class | 0.89 | 0.06 | 14.00 | |
MsBackendRawFileReader | 1.21 | 0.10 | 42.82 | |
hidden_aliases | 0.27 | 0.00 | 12.44 | |
ioBenchmark | 9.03 | 1.97 | 53.72 | |