Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-06-20 12:15 -0400 (Thu, 20 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4687 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" | 4402 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 937/2242 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HiCBricks 1.23.0 (landing page) Koustav Pal
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
To the developers/maintainers of the HiCBricks package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCBricks.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HiCBricks |
Version: 1.23.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HiCBricks_1.23.0.tar.gz |
StartedAt: 2024-06-19 20:50:10 -0400 (Wed, 19 Jun 2024) |
EndedAt: 2024-06-19 20:53:08 -0400 (Wed, 19 Jun 2024) |
EllapsedTime: 178.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HiCBricks.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HiCBricks_1.23.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/HiCBricks.Rcheck’ * using R version 4.4.1 RC (2024-06-06 r86719) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘HiCBricks/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HiCBricks’ version ‘1.23.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HiCBricks’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
HiCBricks.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HiCBricks ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘HiCBricks’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HiCBricks)
HiCBricks.Rcheck/HiCBricks-Ex.timings
name | user | system | elapsed | |
BrickContainer_change_experiment_name | 1.300 | 0.122 | 1.439 | |
BrickContainer_change_output_directory | 1.074 | 0.095 | 1.174 | |
BrickContainer_get_path_to_file | 0.933 | 0.087 | 1.038 | |
BrickContainer_list_chromosomes | 0.894 | 0.085 | 0.990 | |
BrickContainer_list_experiment_name | 0.915 | 0.085 | 1.011 | |
BrickContainer_list_files | 0.972 | 0.090 | 1.082 | |
BrickContainer_list_output_directory | 0.950 | 0.089 | 1.048 | |
BrickContainer_list_resolutions | 0.918 | 0.080 | 1.005 | |
BrickContainer_unlink_resolution | 2.011 | 0.180 | 2.203 | |
Brick_add_ranges | 2.008 | 0.124 | 2.149 | |
Brick_call_compartments | 1.506 | 0.248 | 1.779 | |
Brick_export_to_sparse | 2.967 | 0.311 | 3.313 | |
Brick_fetch_range_index | 1.135 | 0.084 | 1.227 | |
Brick_fetch_row_vector | 1.736 | 0.263 | 2.034 | |
Brick_get_bintable | 0.931 | 0.084 | 1.029 | |
Brick_get_chrominfo | 0.870 | 0.086 | 0.966 | |
Brick_get_entire_matrix | 1.678 | 0.270 | 1.973 | |
Brick_get_matrix | 1.295 | 0.267 | 1.584 | |
Brick_get_matrix_mcols | 1.240 | 0.249 | 1.501 | |
Brick_get_matrix_within_coords | 1.793 | 0.221 | 2.031 | |
Brick_get_ranges | 0.951 | 0.090 | 1.051 | |
Brick_get_values_by_distance | 1.439 | 0.250 | 1.710 | |
Brick_get_vector_values | 1.305 | 0.306 | 1.625 | |
Brick_list_matrices | 0.889 | 0.086 | 1.009 | |
Brick_list_matrix_mcols | 0.883 | 0.080 | 0.972 | |
Brick_list_mcool_normalisations | 0.001 | 0.000 | 0.001 | |
Brick_list_mcool_resolutions | 0 | 0 | 0 | |
Brick_list_rangekeys | 0.870 | 0.081 | 0.958 | |
Brick_list_ranges_mcols | 0.833 | 0.074 | 0.913 | |
Brick_load_cis_matrix_till_distance | 1.086 | 0.255 | 1.352 | |
Brick_load_data_from_mcool | 0.000 | 0.000 | 0.001 | |
Brick_load_data_from_sparse | 0.001 | 0.000 | 0.001 | |
Brick_load_matrix | 1.217 | 0.268 | 1.499 | |
Brick_local_score_differentiator | 1.894 | 0.449 | 2.358 | |
Brick_make_ranges | 0.007 | 0.000 | 0.007 | |
Brick_matrix_dimensions | 1.244 | 0.299 | 1.558 | |
Brick_matrix_exists | 1.277 | 0.268 | 1.587 | |
Brick_matrix_filename | 1.321 | 0.271 | 1.626 | |
Brick_matrix_isdone | 1.295 | 0.208 | 1.522 | |
Brick_matrix_issparse | 1.338 | 0.330 | 1.696 | |
Brick_matrix_maxdist | 1.298 | 0.243 | 1.559 | |
Brick_matrix_minmax | 1.301 | 0.228 | 1.552 | |
Brick_mcool_normalisation_exists | 0.001 | 0.000 | 0.000 | |
Brick_rangekey_exists | 0.900 | 0.083 | 0.992 | |
Brick_return_region_position | 0.956 | 0.086 | 1.054 | |
Brick_vizart_plot_heatmap | 2.340 | 0.445 | 2.812 | |
Create_many_Bricks | 0.915 | 0.086 | 1.014 | |
Create_many_Bricks_from_mcool | 0.000 | 0.000 | 0.001 | |
load_BrickContainer | 0.933 | 0.086 | 1.023 | |