Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-07-04 11:43 -0400 (Thu, 04 Jul 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4411 |
palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4413 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4395 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4390 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4407 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 937/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HiCBricks 1.23.0 (landing page) Koustav Pal
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the HiCBricks package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCBricks.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HiCBricks |
Version: 1.23.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HiCBricks_1.23.0.tar.gz |
StartedAt: 2024-07-04 00:29:49 -0400 (Thu, 04 Jul 2024) |
EndedAt: 2024-07-04 00:31:05 -0400 (Thu, 04 Jul 2024) |
EllapsedTime: 75.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HiCBricks.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HiCBricks_1.23.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/HiCBricks.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.5 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘HiCBricks/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HiCBricks’ version ‘1.23.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HiCBricks’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
HiCBricks.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HiCBricks ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘HiCBricks’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HiCBricks)
HiCBricks.Rcheck/HiCBricks-Ex.timings
name | user | system | elapsed | |
BrickContainer_change_experiment_name | 0.381 | 0.050 | 0.495 | |
BrickContainer_change_output_directory | 0.299 | 0.040 | 0.377 | |
BrickContainer_get_path_to_file | 0.231 | 0.038 | 0.301 | |
BrickContainer_list_chromosomes | 0.229 | 0.031 | 0.296 | |
BrickContainer_list_experiment_name | 0.225 | 0.037 | 0.287 | |
BrickContainer_list_files | 0.225 | 0.035 | 0.291 | |
BrickContainer_list_output_directory | 0.229 | 0.032 | 0.297 | |
BrickContainer_list_resolutions | 0.230 | 0.041 | 0.319 | |
BrickContainer_unlink_resolution | 0.521 | 0.084 | 0.690 | |
Brick_add_ranges | 0.648 | 0.059 | 0.830 | |
Brick_call_compartments | 0.475 | 0.133 | 0.690 | |
Brick_export_to_sparse | 0.754 | 0.095 | 0.973 | |
Brick_fetch_range_index | 0.284 | 0.036 | 0.369 | |
Brick_fetch_row_vector | 0.472 | 0.103 | 0.663 | |
Brick_get_bintable | 0.227 | 0.041 | 0.287 | |
Brick_get_chrominfo | 0.217 | 0.042 | 0.277 | |
Brick_get_entire_matrix | 0.575 | 0.086 | 0.759 | |
Brick_get_matrix | 0.359 | 0.087 | 0.523 | |
Brick_get_matrix_mcols | 0.360 | 0.076 | 0.461 | |
Brick_get_matrix_within_coords | 0.491 | 0.072 | 0.651 | |
Brick_get_ranges | 0.256 | 0.041 | 0.340 | |
Brick_get_values_by_distance | 0.412 | 0.085 | 0.592 | |
Brick_get_vector_values | 0.379 | 0.097 | 0.544 | |
Brick_list_matrices | 0.240 | 0.040 | 0.304 | |
Brick_list_matrix_mcols | 0.226 | 0.032 | 0.303 | |
Brick_list_mcool_normalisations | 0 | 0 | 0 | |
Brick_list_mcool_resolutions | 0 | 0 | 0 | |
Brick_list_rangekeys | 0.220 | 0.036 | 0.285 | |
Brick_list_ranges_mcols | 0.255 | 0.037 | 0.326 | |
Brick_load_cis_matrix_till_distance | 0.342 | 0.065 | 0.456 | |
Brick_load_data_from_mcool | 0 | 0 | 0 | |
Brick_load_data_from_sparse | 0 | 0 | 0 | |
Brick_load_matrix | 0.399 | 0.119 | 0.566 | |
Brick_local_score_differentiator | 0.565 | 0.103 | 0.773 | |
Brick_make_ranges | 0.004 | 0.000 | 0.004 | |
Brick_matrix_dimensions | 0.379 | 0.109 | 0.584 | |
Brick_matrix_exists | 0.364 | 0.083 | 0.491 | |
Brick_matrix_filename | 0.351 | 0.118 | 0.545 | |
Brick_matrix_isdone | 0.384 | 0.091 | 0.527 | |
Brick_matrix_issparse | 0.370 | 0.116 | 0.539 | |
Brick_matrix_maxdist | 0.366 | 0.069 | 0.495 | |
Brick_matrix_minmax | 0.352 | 0.090 | 0.516 | |
Brick_mcool_normalisation_exists | 0.000 | 0.000 | 0.001 | |
Brick_rangekey_exists | 0.231 | 0.036 | 0.292 | |
Brick_return_region_position | 0.253 | 0.040 | 0.351 | |
Brick_vizart_plot_heatmap | 0.708 | 0.117 | 0.909 | |
Create_many_Bricks | 0.237 | 0.042 | 0.328 | |
Create_many_Bricks_from_mcool | 0 | 0 | 0 | |
load_BrickContainer | 0.260 | 0.044 | 0.363 | |