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BUILD BIN report for pdInfoBuilder on merida2

This page was generated on 2019-04-09 13:23:41 -0400 (Tue, 09 Apr 2019).

Package 1168/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pdInfoBuilder 1.47.1
Benilton Carvalho
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/pdInfoBuilder
Branch: master
Last Commit: d94f871
Last Changed Date: 2018-11-18 20:48:36 -0400 (Sun, 18 Nov 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]

Summary

Package: pdInfoBuilder
Version: 1.47.1
Command: rm -rf pdInfoBuilder.buildbin-libdir && mkdir pdInfoBuilder.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh pdInfoBuilder_1.47.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R pdInfoBuilder.buildbin-libdir
StartedAt: 2019-04-09 06:06:38 -0400 (Tue, 09 Apr 2019)
EndedAt: 2019-04-09 06:07:54 -0400 (Tue, 09 Apr 2019)
EllapsedTime: 76.7 seconds
RetCode: 0
Status:  OK 
PackageFile: pdInfoBuilder_1.47.1.tgz
PackageFileSize: 794 KiB

Command output

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### Running command:
###
###   rm -rf pdInfoBuilder.buildbin-libdir && mkdir pdInfoBuilder.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh pdInfoBuilder_1.47.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R pdInfoBuilder.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=pdInfoBuilder.buildbin-libdir pdInfoBuilder_1.47.1.tar.gz'
>>>>>>> 

* installing *source* package ‘pdInfoBuilder’ ...
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c pdInfoBuilder.c -o pdInfoBuilder.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o pdInfoBuilder.so pdInfoBuilder.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/pdInfoBuilder.buildbin-libdir/pdInfoBuilder/libs
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package ‘RSQLite’ for request: ‘dbGetQuery’ when loading ‘pdInfoBuilder’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
No methods found in package ‘RSQLite’ for request: ‘dbGetQuery’ when loading ‘pdInfoBuilder’
* DONE (pdInfoBuilder)


>>>>>>> 
>>>>>>> FIXING LINKS FOR pdInfoBuilder.buildbin-libdir/pdInfoBuilder/libs//pdInfoBuilder.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "pdInfoBuilder.buildbin-libdir/pdInfoBuilder/libs//pdInfoBuilder.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "pdInfoBuilder.buildbin-libdir/pdInfoBuilder/libs//pdInfoBuilder.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "pdInfoBuilder.buildbin-libdir/pdInfoBuilder/libs//pdInfoBuilder.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "pdInfoBuilder.buildbin-libdir/pdInfoBuilder/libs//pdInfoBuilder.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "pdInfoBuilder.buildbin-libdir/pdInfoBuilder/libs//pdInfoBuilder.so"