| Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 12:40:11 -0400 (Tue, 09 Apr 2019).
| Package 1118/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| onlineFDR 1.1.1 David Robertson
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | ERROR | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ ERROR ] | OK | |||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | ERROR | OK | |||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: onlineFDR |
| Version: 1.1.1 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:onlineFDR.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings onlineFDR_1.1.1.tar.gz |
| StartedAt: 2019-04-09 04:40:40 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 04:41:05 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 25.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: onlineFDR.Rcheck |
| Warnings: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:onlineFDR.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings onlineFDR_1.1.1.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/onlineFDR.Rcheck' * using R Under development (unstable) (2019-03-09 r76216) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'onlineFDR/DESCRIPTION' ... OK * this is package 'onlineFDR' version '1.1.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'onlineFDR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' ERROR Running the tests in 'tests/testthat.R' failed. Last 13 lines of output: [3] 0 - 1 == -1 == testthat results =========================================================== OK: 24 SKIPPED: 0 FAILED: 8 1. Failure: Correct rejections for sample dataframes (@test_LOND.R#38) 2. Failure: Correct rejections for sample dataframes (@test_LOND.R#39) 3. Failure: Correct rejections for sample dataframes (@test_LORD.R#42) 4. Failure: Correct rejections for sample dataframes (@test_LORD.R#43) 5. Failure: Correct rejections for sample dataframes (@test_LORD.R#44) 6. Failure: Correct rejections for sample dataframes (@test_LORD.R#45) 7. Failure: Correct rejections for sample dataframes (@test_LORDdep.R#33) 8. Failure: Correct rejections for sample dataframes (@test_bonfInfinite.R#33) Error: testthat unit tests failed Execution halted ** running tests for arch 'x64' ... Running 'testthat.R' ERROR Running the tests in 'tests/testthat.R' failed. Last 13 lines of output: [3] 0 - 1 == -1 == testthat results =========================================================== OK: 24 SKIPPED: 0 FAILED: 8 1. Failure: Correct rejections for sample dataframes (@test_LOND.R#38) 2. Failure: Correct rejections for sample dataframes (@test_LOND.R#39) 3. Failure: Correct rejections for sample dataframes (@test_LORD.R#42) 4. Failure: Correct rejections for sample dataframes (@test_LORD.R#43) 5. Failure: Correct rejections for sample dataframes (@test_LORD.R#44) 6. Failure: Correct rejections for sample dataframes (@test_LORD.R#45) 7. Failure: Correct rejections for sample dataframes (@test_LORDdep.R#33) 8. Failure: Correct rejections for sample dataframes (@test_bonfInfinite.R#33) Error: testthat unit tests failed Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 ERRORs See 'C:/Users/biocbuild/bbs-3.9-bioc/meat/onlineFDR.Rcheck/00check.log' for details.
onlineFDR.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/onlineFDR_1.1.1.tar.gz && rm -rf onlineFDR.buildbin-libdir && mkdir onlineFDR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=onlineFDR.buildbin-libdir onlineFDR_1.1.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL onlineFDR_1.1.1.zip && rm onlineFDR_1.1.1.tar.gz onlineFDR_1.1.1.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
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install for i386
* installing *source* package 'onlineFDR' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'onlineFDR'
finding HTML links ... done
LOND html
LORD html
LORDdep html
bonfInfinite html
onlineFDR-package html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'onlineFDR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'onlineFDR' as onlineFDR_1.1.1.zip
* DONE (onlineFDR)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'onlineFDR' successfully unpacked and MD5 sums checked
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onlineFDR.Rcheck/tests_i386/testthat.Rout.fail
R Under development (unstable) (2019-03-09 r76216) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(onlineFDR)
>
> test_check("onlineFDR")
-- 1. Failure: Correct rejections for sample dataframes (@test_LOND.R#38) -----
`test4` not identical to c(1, 0, 1).
2/3 mismatches (average diff: 1)
[2] 1 - 0 == 1
[3] 0 - 1 == -1
-- 2. Failure: Correct rejections for sample dataframes (@test_LOND.R#39) -----
`test4dep` not identical to c(1, 0, 0).
1/3 mismatches
[2] 1 - 0 == 1
-- 3. Failure: Correct rejections for sample dataframes (@test_LORD.R#42) -----
`test4` not identical to c(1, 0, 1).
2/3 mismatches (average diff: 1)
[2] 1 - 0 == 1
[3] 0 - 1 == -1
-- 4. Failure: Correct rejections for sample dataframes (@test_LORD.R#43) -----
`test4vplus` not identical to c(1, 0, 1).
2/3 mismatches (average diff: 1)
[2] 1 - 0 == 1
[3] 0 - 1 == -1
-- 5. Failure: Correct rejections for sample dataframes (@test_LORD.R#44) -----
`test4v2` not identical to c(1, 0, 1).
2/3 mismatches (average diff: 1)
[2] 1 - 0 == 1
[3] 0 - 1 == -1
-- 6. Failure: Correct rejections for sample dataframes (@test_LORD.R#45) -----
`test4v1` not identical to c(1, 0, 0).
1/3 mismatches
[2] 1 - 0 == 1
-- 7. Failure: Correct rejections for sample dataframes (@test_LORDdep.R#33) --
`test4` not identical to c(1, 0, 1).
2/3 mismatches (average diff: 1)
[2] 1 - 0 == 1
[3] 0 - 1 == -1
-- 8. Failure: Correct rejections for sample dataframes (@test_bonfInfinite.R#33
`test4` not identical to c(1, 0, 1).
2/3 mismatches (average diff: 1)
[2] 1 - 0 == 1
[3] 0 - 1 == -1
== testthat results ===========================================================
OK: 24 SKIPPED: 0 FAILED: 8
1. Failure: Correct rejections for sample dataframes (@test_LOND.R#38)
2. Failure: Correct rejections for sample dataframes (@test_LOND.R#39)
3. Failure: Correct rejections for sample dataframes (@test_LORD.R#42)
4. Failure: Correct rejections for sample dataframes (@test_LORD.R#43)
5. Failure: Correct rejections for sample dataframes (@test_LORD.R#44)
6. Failure: Correct rejections for sample dataframes (@test_LORD.R#45)
7. Failure: Correct rejections for sample dataframes (@test_LORDdep.R#33)
8. Failure: Correct rejections for sample dataframes (@test_bonfInfinite.R#33)
Error: testthat unit tests failed
Execution halted
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onlineFDR.Rcheck/tests_x64/testthat.Rout.fail
R Under development (unstable) (2019-03-09 r76216) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(onlineFDR)
>
> test_check("onlineFDR")
-- 1. Failure: Correct rejections for sample dataframes (@test_LOND.R#38) -----
`test4` not identical to c(1, 0, 1).
2/3 mismatches (average diff: 1)
[2] 1 - 0 == 1
[3] 0 - 1 == -1
-- 2. Failure: Correct rejections for sample dataframes (@test_LOND.R#39) -----
`test4dep` not identical to c(1, 0, 0).
1/3 mismatches
[2] 1 - 0 == 1
-- 3. Failure: Correct rejections for sample dataframes (@test_LORD.R#42) -----
`test4` not identical to c(1, 0, 1).
2/3 mismatches (average diff: 1)
[2] 1 - 0 == 1
[3] 0 - 1 == -1
-- 4. Failure: Correct rejections for sample dataframes (@test_LORD.R#43) -----
`test4vplus` not identical to c(1, 0, 1).
2/3 mismatches (average diff: 1)
[2] 1 - 0 == 1
[3] 0 - 1 == -1
-- 5. Failure: Correct rejections for sample dataframes (@test_LORD.R#44) -----
`test4v2` not identical to c(1, 0, 1).
2/3 mismatches (average diff: 1)
[2] 1 - 0 == 1
[3] 0 - 1 == -1
-- 6. Failure: Correct rejections for sample dataframes (@test_LORD.R#45) -----
`test4v1` not identical to c(1, 0, 0).
1/3 mismatches
[2] 1 - 0 == 1
-- 7. Failure: Correct rejections for sample dataframes (@test_LORDdep.R#33) --
`test4` not identical to c(1, 0, 1).
2/3 mismatches (average diff: 1)
[2] 1 - 0 == 1
[3] 0 - 1 == -1
-- 8. Failure: Correct rejections for sample dataframes (@test_bonfInfinite.R#33
`test4` not identical to c(1, 0, 1).
2/3 mismatches (average diff: 1)
[2] 1 - 0 == 1
[3] 0 - 1 == -1
== testthat results ===========================================================
OK: 24 SKIPPED: 0 FAILED: 8
1. Failure: Correct rejections for sample dataframes (@test_LOND.R#38)
2. Failure: Correct rejections for sample dataframes (@test_LOND.R#39)
3. Failure: Correct rejections for sample dataframes (@test_LORD.R#42)
4. Failure: Correct rejections for sample dataframes (@test_LORD.R#43)
5. Failure: Correct rejections for sample dataframes (@test_LORD.R#44)
6. Failure: Correct rejections for sample dataframes (@test_LORD.R#45)
7. Failure: Correct rejections for sample dataframes (@test_LORDdep.R#33)
8. Failure: Correct rejections for sample dataframes (@test_bonfInfinite.R#33)
Error: testthat unit tests failed
Execution halted
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onlineFDR.Rcheck/examples_i386/onlineFDR-Ex.timings
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onlineFDR.Rcheck/examples_x64/onlineFDR-Ex.timings
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