Multiple platform build/check report for BioC 3.9 - CHECK report for onlineFDR on malbec2

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:onlineFDR.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings onlineFDR_1.1.1.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/onlineFDR.Rcheck’
* using R Under development (unstable) (2019-03-18 r76245)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘onlineFDR/DESCRIPTION’ ... OK
* this is package ‘onlineFDR’ version ‘1.1.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘onlineFDR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  [3] 0 - 1 == -1
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 24 SKIPPED: 0 FAILED: 8
  1. Failure: Correct rejections for sample dataframes (@test_LOND.R#38) 
  2. Failure: Correct rejections for sample dataframes (@test_LOND.R#39) 
  3. Failure: Correct rejections for sample dataframes (@test_LORD.R#42) 
  4. Failure: Correct rejections for sample dataframes (@test_LORD.R#43) 
  5. Failure: Correct rejections for sample dataframes (@test_LORD.R#44) 
  6. Failure: Correct rejections for sample dataframes (@test_LORD.R#45) 
  7. Failure: Correct rejections for sample dataframes (@test_LORDdep.R#33) 
  8. Failure: Correct rejections for sample dataframes (@test_bonfInfinite.R#33) 
  
  Error: testthat unit tests failed
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.9-bioc/meat/onlineFDR.Rcheck/00check.log’
for details.

Installation output

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL onlineFDR
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘onlineFDR’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (onlineFDR)

Tests output


R Under development (unstable) (2019-03-18 r76245) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(onlineFDR)
> 
> test_check("onlineFDR")
── 1. Failure: Correct rejections for sample dataframes (@test_LOND.R#38)  ─────
`test4` not identical to c(1, 0, 1).
2/3 mismatches (average diff: 1)
[2] 1 - 0 ==  1
[3] 0 - 1 == -1

── 2. Failure: Correct rejections for sample dataframes (@test_LOND.R#39)  ─────
`test4dep` not identical to c(1, 0, 0).
1/3 mismatches
[2] 1 - 0 == 1

── 3. Failure: Correct rejections for sample dataframes (@test_LORD.R#42)  ─────
`test4` not identical to c(1, 0, 1).
2/3 mismatches (average diff: 1)
[2] 1 - 0 ==  1
[3] 0 - 1 == -1

── 4. Failure: Correct rejections for sample dataframes (@test_LORD.R#43)  ─────
`test4vplus` not identical to c(1, 0, 1).
2/3 mismatches (average diff: 1)
[2] 1 - 0 ==  1
[3] 0 - 1 == -1

── 5. Failure: Correct rejections for sample dataframes (@test_LORD.R#44)  ─────
`test4v2` not identical to c(1, 0, 1).
2/3 mismatches (average diff: 1)
[2] 1 - 0 ==  1
[3] 0 - 1 == -1

── 6. Failure: Correct rejections for sample dataframes (@test_LORD.R#45)  ─────
`test4v1` not identical to c(1, 0, 0).
1/3 mismatches
[2] 1 - 0 == 1

── 7. Failure: Correct rejections for sample dataframes (@test_LORDdep.R#33)  ──
`test4` not identical to c(1, 0, 1).
2/3 mismatches (average diff: 1)
[2] 1 - 0 ==  1
[3] 0 - 1 == -1

── 8. Failure: Correct rejections for sample dataframes (@test_bonfInfinite.R#33
`test4` not identical to c(1, 0, 1).
2/3 mismatches (average diff: 1)
[2] 1 - 0 ==  1
[3] 0 - 1 == -1

══ testthat results  ═══════════════════════════════════════════════════════════
OK: 24 SKIPPED: 0 FAILED: 8
1. Failure: Correct rejections for sample dataframes (@test_LOND.R#38) 
2. Failure: Correct rejections for sample dataframes (@test_LOND.R#39) 
3. Failure: Correct rejections for sample dataframes (@test_LORD.R#42) 
4. Failure: Correct rejections for sample dataframes (@test_LORD.R#43) 
5. Failure: Correct rejections for sample dataframes (@test_LORD.R#44) 
6. Failure: Correct rejections for sample dataframes (@test_LORD.R#45) 
7. Failure: Correct rejections for sample dataframes (@test_LORDdep.R#33) 
8. Failure: Correct rejections for sample dataframes (@test_bonfInfinite.R#33) 

Error: testthat unit tests failed
Execution halted

name	user	system	elapsed
LOND	0.022	0.000	0.022
LORD	0.013	0.000	0.013
LORDdep	0.014	0.001	0.014
bonfInfinite	0.012	0.000	0.012

CHECK report for onlineFDR on malbec2

Summary

Command output

Installation output

Tests output

Example timings