metagenomeSeq 1.25.3
Joseph N. Paulson
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/metagenomeSeq |
| Branch: master |
| Last Commit: 237560f |
| Last Changed Date: 2019-02-27 10:35:57 -0400 (Wed, 27 Feb 2019) |
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | ERROR | skipped | | |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | [ ERROR ] | skipped | skipped | |
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped | |
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### chmod a+r metagenomeSeq -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data metagenomeSeq
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* checking for file 'metagenomeSeq/DESCRIPTION' ... OK
* preparing 'metagenomeSeq':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'fitTimeSeries.Rnw' using knitr
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall,
clusterEvalQ, clusterExport, clusterMap, parApply,
parCapply, parLapply, parLapplyLB, parRapply,
parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated,
append, as.data.frame, basename, cbind, colMeans,
colSums, colnames, dirname, do.call, duplicated,
eval, evalq, get, grep, grepl, intersect,
is.unsorted, lapply, mapply, match, mget, order,
paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
rowMeans, rowSums, rownames, sapply, setdiff, sort,
table, tapply, union, unique, unsplit, which,
which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages
'citation("pkgname")'.
Loading required package: limma
Attaching package: 'limma'
The following object is masked from 'package:BiocGenerics':
plotMA
Loading required package: glmnet
Loading required package: Matrix
Loading required package: foreach
Loaded glmnet 2.0-16
Loading required package: RColorBrewer
Quitting from lines 195-231 (fitTimeSeries.Rnw)
Error: processing vignette 'fitTimeSeries.Rnw' failed with diagnostics:
replacement has length zero
--- failed re-building 'fitTimeSeries.Rnw'
--- re-building 'metagenomeSeq.Rnw' using knitr
--- finished re-building 'metagenomeSeq.Rnw'
SUMMARY: processing the following file failed:
'fitTimeSeries.Rnw'
Error: Vignette re-building failed.
Execution halted