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BUILD report for metagenomeSeq on malbec2

This page was generated on 2019-04-09 11:35:05 -0400 (Tue, 09 Apr 2019).

Package 947/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metagenomeSeq 1.25.3
Joseph N. Paulson
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/metagenomeSeq
Branch: master
Last Commit: 237560f
Last Changed Date: 2019-02-27 10:35:57 -0400 (Wed, 27 Feb 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK [ ERROR ] skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: metagenomeSeq
Version: 1.25.3
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data metagenomeSeq
StartedAt: 2019-04-08 20:01:07 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 20:02:13 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 66.6 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data metagenomeSeq
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* checking for file ‘metagenomeSeq/DESCRIPTION’ ... OK
* preparing ‘metagenomeSeq’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘fitTimeSeries.Rnw’ using knitr
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall,
    clusterEvalQ, clusterExport, clusterMap, parApply,
    parCapply, parLapply, parLapplyLB, parRapply,
    parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated,
    append, as.data.frame, basename, cbind, colMeans,
    colSums, colnames, dirname, do.call, duplicated,
    eval, evalq, get, grep, grepl, intersect,
    is.unsorted, lapply, mapply, match, mget, order,
    paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rowMeans, rowSums, rownames, sapply, setdiff, sort,
    table, tapply, union, unique, unsplit, which,
    which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages
    'citation("pkgname")'.

Loading required package: limma

Attaching package: 'limma'

The following object is masked from 'package:BiocGenerics':

    plotMA

Loading required package: glmnet
Loading required package: Matrix
Loading required package: foreach
Loaded glmnet 2.0-16

Loading required package: RColorBrewer
Quitting from lines 195-231 (fitTimeSeries.Rnw) 
Error: processing vignette 'fitTimeSeries.Rnw' failed with diagnostics:
replacement has length zero
--- failed re-building ‘fitTimeSeries.Rnw’

--- re-building ‘metagenomeSeq.Rnw’ using knitr
--- finished re-building ‘metagenomeSeq.Rnw’

SUMMARY: processing the following file failed:
  ‘fitTimeSeries.Rnw’

Error: Vignette re-building failed.
Execution halted