##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/iClusterPlus_1.19.0.tar.gz && rm -rf iClusterPlus.buildbin-libdir && mkdir iClusterPlus.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iClusterPlus.buildbin-libdir iClusterPlus_1.19.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL iClusterPlus_1.19.0.zip && rm iClusterPlus_1.19.0.tar.gz iClusterPlus_1.19.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 20.2M 100 20.2M 0 0 60.2M 0 --:--:-- --:--:-- --:--:-- 61.6M
install for i386
* installing *source* package 'iClusterPlus' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c iClusterBayes.c -o iClusterBayes.o
iClusterBayes.c: In function 'bvsPoisson':
iClusterBayes.c:380:27: warning: variable 'k1k1' set but not used [-Wunused-but-set-variable]
int *gamma_p,i,j,nk1,k1,k1k1,incx,incy,ID,np;
^
iClusterBayes.c: In function 'bvsBinom':
iClusterBayes.c:629:27: warning: variable 'k1k1' set but not used [-Wunused-but-set-variable]
int *gamma_p,i,j,nk1,k1,k1k1,incx,incy,ID,np;
^
iClusterBayes.c: In function 'mcmcBayes':
iClusterBayes.c:1214:28: warning: variable 'Zdraw' set but not used [-Wunused-but-set-variable]
int i,j,h,n,k,ID,Zburnin,Zdraw,ndt,nk,thin,nthin,remainder,ty0,p0,ty1,p1,ty2,p2,ty3,p3,ty4,p4,ty5,p5,betaBurnin,betaDraw,p0k,p1k,p2k,p3k,p4k,p5k;
^
iClusterBayes.c:1214:20: warning: variable 'Zburnin' set but not used [-Wunused-but-set-variable]
int i,j,h,n,k,ID,Zburnin,Zdraw,ndt,nk,thin,nthin,remainder,ty0,p0,ty1,p1,ty2,p2,ty3,p3,ty4,p4,ty5,p5,betaBurnin,betaDraw,p0k,p1k,p2k,p3k,p4k,p5k;
^
iClusterBayes.c:1216:174: warning: 'gb3' may be used uninitialized in this function [-Wmaybe-uninitialized]
double *sumMeanZ,*suma0,*sumb0,*suma1,*sumb1,*suma2,*sumb2,*suma3,*sumb3,*suma4,*sumb4,*suma5,*sumb5,*sumsig0,*sumsig1,*sumsig2,*sumsig3,*sumsig4,*sumsig5,*gb0,*gb1,*gb2,*gb3,*gb4,*gb5;
^
iClusterBayes.c:1477:5: warning: 'gb2' may be used uninitialized in this function [-Wmaybe-uninitialized]
mcmcMix6d(meanZ,lastZ,nkZbd,sdev,
^
iClusterBayes.c:1477:5: warning: 'gb1' may be used uninitialized in this function [-Wmaybe-uninitialized]
iClusterBayes.c:1477:5: warning: 'gb0' may be used uninitialized in this function [-Wmaybe-uninitialized]
iClusterBayes.c:1216:179: warning: 'gb4' may be used uninitialized in this function [-Wmaybe-uninitialized]
double *sumMeanZ,*suma0,*sumb0,*suma1,*sumb1,*suma2,*sumb2,*suma3,*sumb3,*suma4,*sumb4,*suma5,*sumb5,*sumsig0,*sumsig1,*sumsig2,*sumsig3,*sumsig4,*sumsig5,*gb0,*gb1,*gb2,*gb3,*gb4,*gb5;
^
iClusterBayes.c:1216:184: warning: 'gb5' may be used uninitialized in this function [-Wmaybe-uninitialized]
double *sumMeanZ,*suma0,*sumb0,*suma1,*sumb1,*suma2,*sumb2,*suma3,*sumb3,*suma4,*sumb4,*suma5,*sumb5,*sumsig0,*sumsig1,*sumsig2,*sumsig3,*sumsig4,*sumsig5,*gb0,*gb1,*gb2,*gb3,*gb4,*gb5;
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c iClusterPlus.c -o iClusterPlus.o
iClusterPlus.c: In function 'iClusterCore':
iClusterPlus.c:1101:60: warning: unused variable 'tempm3' [-Wunused-variable]
double *btp,*btpb, *EXZt,*tempX,*tempm0,*tempm1,*tempm2,*tempm3,*BOld,*PhivecOld, *XtXdiag;
^
iClusterPlus.c:1099:18: warning: variable 'pp' set but not used [-Wunused-but-set-variable]
int i, j,kk,pk,pp,s,t;
^
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=generic -c newGLMnet.f90 -o newGLMnet.o
newGLMnet.f90:1:
c
1
Error: Unclassifiable statement at (1)
newGLMnet.f90:2:
c
1
Error: Unclassifiable statement at (1)
newGLMnet.f90:3:
c newGLMnet (2/17/12)
1
Error: Unclassifiable statement at (1)
newGLMnet.f90:4:
c
1
Error: Unclassifiable statement at (1)
newGLMnet.f90:5:
c
1
Error: Unclassifiable statement at (1)
newGLMnet.f90:6:
c Elastic net with squared-error loss
1
Error: Unclassifiable statement at (1)
newGLMnet.f90:7:
c
1
Error: Unclassifiable statement at (1)
newGLMnet.f90:8:
c dense predictor matrix:
1
Error: Unclassifiable statement at (1)
newGLMnet.f90:9:
c
1
Error: Unclassifiable statement at (1)
newGLMnet.f90:10:
c call elnet(ka,parm,no,ni,x,y,w,jd,vp,ne,nx,nlam,flmin,ulam,thr,isd,maxit,
1
Error: Unclassifiable statement at (1)
newGLMnet.f90:11:
c lmu,a0,ca,ia,nin,rsq,alm,nlp,jerr)
1
Error: Unclassifiable statement at (1)
newGLMnet.f90:12:
c
1
Error: Unclassifiable statement at (1)
newGLMnet.f90:13:
c x(no,ni) = predictor data matrix flat file (overwritten)
1
Error: Unclassifiable statement at (1)
newGLMnet.f90:14:
c
1
Error: Unclassifiable statement at (1)
newGLMnet.f90:15:
c
1
Error: Unclassifiable statement at (1)
newGLMnet.f90:16:
c sparse predictor matrix:
1
Error: Unclassifiable statement at (1)
newGLMnet.f90:17:
c
1
Error: Unclassifiable statement at (1)
newGLMnet.f90:18:
c call spelnet(ka,parm,no,ni,x,ix,jx,y,w,jd,vp,ne,nx,nlam,flmin,ulam,thr,
1
Error: Unclassifiable statement at (1)
newGLMnet.f90:19:
c isd,maxit,lmu,a0,ca,ia,nin,rsq,alm,nlp,jerr)
1
Error: Unclassifiable statement at (1)
newGLMnet.f90:20:
c
1
Error: Unclassifiable statement at (1)
newGLMnet.f90:21:
c x, ix, jx = predictor data matrix in compressed sparse row format
1
Error: Unclassifiable statement at (1)
newGLMnet.f90:22:
c
1
Error: Unclassifiable statement at (1)
newGLMnet.f90:23:
c
1
Error: Unclassifiable statement at (1)
newGLMnet.f90:24:
c other inputs:
1
Error: Unclassifiable statement at (1)
newGLMnet.f90:25:
c
1
Error: Unclassifiable statement at (1)
Fatal Error: Error count reached limit of 25.
make: *** [newGLMnet.o] Error 1
ERROR: compilation failed for package 'iClusterPlus'
* removing 'C:/Users/biocbuild/bbs-3.9-bioc/meat/iClusterPlus.buildbin-libdir/iClusterPlus'
