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### Running command:
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### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL iClusterPlus
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘iClusterPlus’ ...
** using staged installation
This package has only been tested with gfortran.
So some checks are needed.
R_HOME is /home/biocbuild/bbs-3.9-bioc/R
Attempting to determine R_ARCH...
R_ARCH is
Attempting to detect how R was configured for Fortran 90....
R configured for gfortran; Good!
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c iClusterBayes.c -o iClusterBayes.o
iClusterBayes.c: In function ‘bvsPoisson’:
iClusterBayes.c:380:27: warning: variable ‘k1k1’ set but not used [-Wunused-but-set-variable]
int *gamma_p,i,j,nk1,k1,k1k1,incx,incy,ID,np;
^˜˜˜
iClusterBayes.c: In function ‘bvsBinom’:
iClusterBayes.c:629:27: warning: variable ‘k1k1’ set but not used [-Wunused-but-set-variable]
int *gamma_p,i,j,nk1,k1,k1k1,incx,incy,ID,np;
^˜˜˜
iClusterBayes.c: In function ‘mcmcBayes’:
iClusterBayes.c:1214:28: warning: variable ‘Zdraw’ set but not used [-Wunused-but-set-variable]
int i,j,h,n,k,ID,Zburnin,Zdraw,ndt,nk,thin,nthin,remainder,ty0,p0,ty1,p1,ty2,p2,ty3,p3,ty4,p4,ty5,p5,betaBurnin,betaDraw,p0k,p1k,p2k,p3k,p4k,p5k;
^˜˜˜˜
iClusterBayes.c:1214:20: warning: variable ‘Zburnin’ set but not used [-Wunused-but-set-variable]
int i,j,h,n,k,ID,Zburnin,Zdraw,ndt,nk,thin,nthin,remainder,ty0,p0,ty1,p1,ty2,p2,ty3,p3,ty4,p4,ty5,p5,betaBurnin,betaDraw,p0k,p1k,p2k,p3k,p4k,p5k;
^˜˜˜˜˜˜
iClusterBayes.c:1216:179: warning: ‘gb4’ may be used uninitialized in this function [-Wmaybe-uninitialized]
double *sumMeanZ,*suma0,*sumb0,*suma1,*sumb1,*suma2,*sumb2,*suma3,*sumb3,*suma4,*sumb4,*suma5,*sumb5,*sumsig0,*sumsig1,*sumsig2,*sumsig3,*sumsig4,*sumsig5,*gb0,*gb1,*gb2,*gb3,*gb4,*gb5;
^˜˜
iClusterBayes.c:1216:174: warning: ‘gb3’ may be used uninitialized in this function [-Wmaybe-uninitialized]
double *sumMeanZ,*suma0,*sumb0,*suma1,*sumb1,*suma2,*sumb2,*suma3,*sumb3,*suma4,*sumb4,*suma5,*sumb5,*sumsig0,*sumsig1,*sumsig2,*sumsig3,*sumsig4,*sumsig5,*gb0,*gb1,*gb2,*gb3,*gb4,*gb5;
^˜˜
iClusterBayes.c:1370:6: warning: ‘gb2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
mcmcMix6d(meanZ,lastZ,nkZbd,sdev,
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
&ty0,&p0,a0,gb0,con0,cat0,sigma0,
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
&ty1,&p1,a1,gb1,con1,cat1,sigma1,
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
&ty2,&p2,a2,gb2,con2,cat2,sigma2,
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
&ty3,&p3,a3,gb3,con3,cat3,sigma3,
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
&ty4,&p4,a4,gb4,con4,cat4,sigma4,
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
&ty5,&p5,a5,gb5,con5,cat5,sigma5,acceptZ);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
iClusterBayes.c:1370:6: warning: ‘gb1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
iClusterBayes.c:1370:6: warning: ‘gb0’ may be used uninitialized in this function [-Wmaybe-uninitialized]
iClusterBayes.c:1216:184: warning: ‘gb5’ may be used uninitialized in this function [-Wmaybe-uninitialized]
double *sumMeanZ,*suma0,*sumb0,*suma1,*sumb1,*suma2,*sumb2,*suma3,*sumb3,*suma4,*sumb4,*suma5,*sumb5,*sumsig0,*sumsig1,*sumsig2,*sumsig3,*sumsig4,*sumsig5,*gb0,*gb1,*gb2,*gb3,*gb4,*gb5;
^˜˜
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c iClusterPlus.c -o iClusterPlus.o
iClusterPlus.c: In function ‘iClusterCore’:
iClusterPlus.c:1101:60: warning: unused variable ‘tempm3’ [-Wunused-variable]
double *btp,*btpb, *EXZt,*tempX,*tempm0,*tempm1,*tempm2,*tempm3,*BOld,*PhivecOld, *XtXdiag;
^˜˜˜˜˜
iClusterPlus.c:1099:18: warning: variable ‘pp’ set but not used [-Wunused-but-set-variable]
int i, j,kk,pk,pp,s,t;
^˜
gfortran -fdefault-real-8 -ffixed-form -fpic -g -O2 -c newGLMnet.f90 -o newGLMnet.o
gcc -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o iClusterPlus.so iClusterBayes.o iClusterPlus.o newGLMnet.o -L/home/biocbuild/bbs-3.9-bioc/R/lib -lRlapack -L/home/biocbuild/bbs-3.9-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-iClusterPlus/00new/iClusterPlus/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
‘iClusterPlus.Rnw’ using ‘UTF-8’
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (iClusterPlus)
