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BUILD BIN report for gpart on merida2

This page was generated on 2019-04-09 13:37:36 -0400 (Tue, 09 Apr 2019).

Package 695/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gpart 1.1.3
Sun Ah Kim
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/gpart
Branch: master
Last Commit: 6014d8d
Last Changed Date: 2019-03-31 23:53:39 -0400 (Sun, 31 Mar 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS [ OK ]

Summary

Package: gpart
Version: 1.1.3
Command: rm -rf gpart.buildbin-libdir && mkdir gpart.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh gpart_1.1.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R gpart.buildbin-libdir
StartedAt: 2019-04-09 05:30:36 -0400 (Tue, 09 Apr 2019)
EndedAt: 2019-04-09 05:31:44 -0400 (Tue, 09 Apr 2019)
EllapsedTime: 68.6 seconds
RetCode: 0
Status:  OK 
PackageFile: gpart_1.1.3.tgz
PackageFileSize: 1.373 MiB

Command output

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###
### Running command:
###
###   rm -rf gpart.buildbin-libdir && mkdir gpart.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh gpart_1.1.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R gpart.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=gpart.buildbin-libdir gpart_1.1.3.tar.gz'
>>>>>>> 

* installing *source* package ‘gpart’ ...
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c gpart_cpp.cpp -o gpart_cpp.o
gpart_cpp.cpp:501:45: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
          Dpclass = CIDp_strLD(b1, b2,lower = lower, upper=upper);
                                      ˜˜˜˜˜ ^ ˜˜˜˜˜
gpart_cpp.cpp:501:59: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
          Dpclass = CIDp_strLD(b1, b2,lower = lower, upper=upper);
                                                     ˜˜˜˜˜^˜˜˜˜˜
gpart_cpp.cpp:561:43: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
        Dpclass = CIDp_strLD(b1, b2,lower = lower, upper=upper);
                                    ˜˜˜˜˜ ^ ˜˜˜˜˜
gpart_cpp.cpp:561:57: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
        Dpclass = CIDp_strLD(b1, b2,lower = lower, upper=upper);
                                                   ˜˜˜˜˜^˜˜˜˜˜
4 warnings generated.
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o gpart.so RcppExports.o gpart_cpp.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/gpart.buildbin-libdir/gpart/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (gpart)


>>>>>>> 
>>>>>>> FIXING LINKS FOR gpart.buildbin-libdir/gpart/libs//gpart.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "gpart.buildbin-libdir/gpart/libs//gpart.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "gpart.buildbin-libdir/gpart/libs//gpart.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "gpart.buildbin-libdir/gpart/libs//gpart.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "gpart.buildbin-libdir/gpart/libs//gpart.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "gpart.buildbin-libdir/gpart/libs//gpart.so"