Sun Ah Kim
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/gpart |
| Branch: master |
| Last Commit: 6014d8d |
| Last Changed Date: 2019-03-31 23:53:39 -0400 (Sun, 31 Mar 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 13:21:07 -0400 (Tue, 09 Apr 2019).
| Package 695/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| gpart 1.1.3 Sun Ah Kim
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | [ OK ] | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK |
| Package: gpart |
| Version: 1.1.3 |
| Command: rm -rf gpart.buildbin-libdir && mkdir gpart.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh gpart_1.1.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R gpart.buildbin-libdir |
| StartedAt: 2019-04-09 07:09:05 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 07:10:29 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 83.8 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: gpart_1.1.3.tgz |
| PackageFileSize: 1.375 MiB |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf gpart.buildbin-libdir && mkdir gpart.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh gpart_1.1.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R gpart.buildbin-libdir
###
##############################################################################
##############################################################################
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=gpart.buildbin-libdir gpart_1.1.3.tar.gz'
>>>>>>>
* installing *source* package ‘gpart’ ...
** using staged installation
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c gpart_cpp.cpp -o gpart_cpp.o
gpart_cpp.cpp:501:45: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
Dpclass = CIDp_strLD(b1, b2,lower = lower, upper=upper);
˜˜˜˜˜ ^ ˜˜˜˜˜
gpart_cpp.cpp:501:59: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
Dpclass = CIDp_strLD(b1, b2,lower = lower, upper=upper);
˜˜˜˜˜^˜˜˜˜˜
gpart_cpp.cpp:561:43: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
Dpclass = CIDp_strLD(b1, b2,lower = lower, upper=upper);
˜˜˜˜˜ ^ ˜˜˜˜˜
gpart_cpp.cpp:561:57: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
Dpclass = CIDp_strLD(b1, b2,lower = lower, upper=upper);
˜˜˜˜˜^˜˜˜˜˜
4 warnings generated.
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o gpart.so RcppExports.o gpart_cpp.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/gpart.buildbin-libdir/00LOCK-gpart/00new/gpart/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gpart)
>>>>>>>
>>>>>>> FIXING LINKS FOR gpart.buildbin-libdir/gpart/libs//gpart.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "gpart.buildbin-libdir/gpart/libs//gpart.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "gpart.buildbin-libdir/gpart/libs//gpart.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "gpart.buildbin-libdir/gpart/libs//gpart.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "gpart.buildbin-libdir/gpart/libs//gpart.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "gpart.buildbin-libdir/gpart/libs//gpart.so"