Package: HilbertCurve

Version: 1.13.2

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings HilbertCurve_1.13.2.tar.gz

StartedAt: 2019-04-09 01:29:55 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 01:32:54 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 179.4 seconds

RetCode: 0

Status:  OK

CheckDir: HilbertCurve.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings HilbertCurve_1.13.2.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/HilbertCurve.Rcheck’
* using R Under development (unstable) (2018-11-27 r75683)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HilbertCurve/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HilbertCurve’ version ‘1.13.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HilbertCurve’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                                      user system elapsed
hc_layer-HilbertCurve-method        27.671  0.825  29.149
hc_layer-GenomicHilbertCurve-method 15.883  0.250  16.368
GenomicHilbertCurve                 10.527  0.164  11.541
hc_png-HilbertCurve-method           8.488  0.233   8.831
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-all.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL HilbertCurve
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘HilbertCurve’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘HilbertCurve.Rmd’ 
** testing if installed package can be loaded
* DONE (HilbertCurve)

R Under development (unstable) (2018-11-27 r75683) -- "Unsuffered Consequences"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(HilbertCurve)))
> 
> test_check("HilbertCurve")
══ testthat results  ═══════════════════════════════════════════════════════════
OK: 8 SKIPPED: 0 FAILED: 0
> 
> proc.time()
   user  system elapsed 
  5.361   0.337   5.903 

name	user	system	elapsed
GenomicHilbertCurve-class	0.000	0.000	0.001
GenomicHilbertCurve	10.527	0.164	11.541
HilbertCurve-class	0.000	0.000	0.001
HilbertCurve	0.686	0.016	0.709
default_overlay	0.000	0.000	0.001
hc_centered_text-HilbertCurve-method	0.177	0.001	0.179
hc_layer-GenomicHilbertCurve-method	15.883	0.250	16.368
hc_layer-HilbertCurve-method	27.671	0.825	29.149
hc_layer-dispatch	0	0	0
hc_level-HilbertCurve-method	0.035	0.002	0.037
hc_map-GenomicHilbertCurve-method	3.307	0.040	3.383
hc_normal_points-HilbertCurve-method	0.000	0.000	0.001
hc_offset-HilbertCurve-method	0.027	0.002	0.029
hc_png-HilbertCurve-method	8.488	0.233	8.831
hc_points-GenomicHilbertCurve-method	0.584	0.009	0.611
hc_points-HilbertCurve-method	0.991	0.010	1.028
hc_points-dispatch	0.000	0.000	0.001
hc_polygon-GenomicHilbertCurve-method	0.734	0.009	0.755
hc_polygon-HilbertCurve-method	0.148	0.004	0.159
hc_polygon-dispatch	0.000	0.000	0.001
hc_rect-GenomicHilbertCurve-method	0.502	0.007	0.530
hc_rect-HilbertCurve-method	0.127	0.003	0.136
hc_rect-dispatch	0.001	0.000	0.000
hc_segmented_points-HilbertCurve-method	0	0	0
hc_segments-GenomicHilbertCurve-method	0.943	0.009	0.965
hc_segments-HilbertCurve-method	0.160	0.004	0.166
hc_segments-dispatch	0	0	0
hc_text-GenomicHilbertCurve-method	0.300	0.007	0.317
hc_text-HilbertCurve-method	0.198	0.004	0.207
hc_text-dispatch	0	0	0
show-HilbertCurve-method	0.013	0.001	0.014
unzoom-HilbertCurve-method	0.011	0.001	0.012
zoom-HilbertCurve-method	0.012	0.001	0.013