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CHECK report for HilbertCurve on celaya2

This page was generated on 2019-04-09 13:14:33 -0400 (Tue, 09 Apr 2019).

Package 746/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HilbertCurve 1.13.2
Zuguang Gu
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/HilbertCurve
Branch: master
Last Commit: 706d638
Last Changed Date: 2018-11-28 04:20:28 -0400 (Wed, 28 Nov 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: HilbertCurve
Version: 1.13.2
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings HilbertCurve_1.13.2.tar.gz
StartedAt: 2019-04-09 02:42:03 -0400 (Tue, 09 Apr 2019)
EndedAt: 2019-04-09 02:45:46 -0400 (Tue, 09 Apr 2019)
EllapsedTime: 222.3 seconds
RetCode: 0
Status:  OK 
CheckDir: HilbertCurve.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings HilbertCurve_1.13.2.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/HilbertCurve.Rcheck’
* using R Under development (unstable) (2019-03-18 r76245)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HilbertCurve/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HilbertCurve’ version ‘1.13.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HilbertCurve’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                                      user system elapsed
hc_layer-HilbertCurve-method        23.847  1.211  26.035
hc_layer-GenomicHilbertCurve-method 14.709  0.492  15.286
GenomicHilbertCurve                 13.725  0.314  15.401
hc_png-HilbertCurve-method           7.839  0.362   8.207
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-all.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

HilbertCurve.Rcheck/00install.out

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### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL HilbertCurve
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘HilbertCurve’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘HilbertCurve.Rmd’ 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HilbertCurve)

Tests output

HilbertCurve.Rcheck/tests/test-all.Rout


R Under development (unstable) (2019-03-18 r76245) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(HilbertCurve)))
> 
> test_check("HilbertCurve")
══ testthat results  ═══════════════════════════════════════════════════════════
OK: 8 SKIPPED: 0 FAILED: 0
> 
> proc.time()
   user  system elapsed 
  5.711   0.576   6.240 

Example timings

HilbertCurve.Rcheck/HilbertCurve-Ex.timings

nameusersystemelapsed
GenomicHilbertCurve-class0.0000.0010.000
GenomicHilbertCurve13.725 0.31415.401
HilbertCurve-class0.0000.0000.001
HilbertCurve0.7460.0400.796
default_overlay0.0000.0000.001
hc_centered_text-HilbertCurve-method0.2410.0020.244
hc_layer-GenomicHilbertCurve-method14.709 0.49215.286
hc_layer-HilbertCurve-method23.847 1.21126.035
hc_layer-dispatch000
hc_level-HilbertCurve-method0.0380.0030.046
hc_map-GenomicHilbertCurve-method4.6050.0564.819
hc_normal_points-HilbertCurve-method0.0000.0000.001
hc_offset-HilbertCurve-method0.0310.0020.034
hc_png-HilbertCurve-method7.8390.3628.207
hc_points-GenomicHilbertCurve-method0.6460.0150.661
hc_points-HilbertCurve-method1.0260.0211.055
hc_points-dispatch0.0000.0000.001
hc_polygon-GenomicHilbertCurve-method0.7710.0100.781
hc_polygon-HilbertCurve-method0.1580.0080.172
hc_polygon-dispatch0.0000.0000.001
hc_rect-GenomicHilbertCurve-method0.5750.0210.628
hc_rect-HilbertCurve-method0.1470.0110.175
hc_rect-dispatch0.0000.0000.001
hc_segmented_points-HilbertCurve-method0.0000.0000.001
hc_segments-GenomicHilbertCurve-method0.9600.0201.003
hc_segments-HilbertCurve-method0.1900.0070.198
hc_segments-dispatch0.0000.0010.000
hc_text-GenomicHilbertCurve-method0.3140.0110.326
hc_text-HilbertCurve-method0.2500.0060.256
hc_text-dispatch0.0010.0000.001
show-HilbertCurve-method0.0140.0010.015
unzoom-HilbertCurve-method0.0160.0010.017
zoom-HilbertCurve-method0.0140.0000.015