Package: FamAgg

Version: 1.11.5

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/FamAgg_1.11.5.tar.gz && rm -rf FamAgg.buildbin-libdir && mkdir FamAgg.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FamAgg.buildbin-libdir FamAgg_1.11.5.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL FamAgg_1.11.5.zip && rm FamAgg_1.11.5.tar.gz FamAgg_1.11.5.zip

StartedAt: 2019-04-08 20:38:26 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-08 20:39:19 -0400 (Mon, 08 Apr 2019)

EllapsedTime: 53.3 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/FamAgg_1.11.5.tar.gz && rm -rf FamAgg.buildbin-libdir && mkdir FamAgg.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FamAgg.buildbin-libdir FamAgg_1.11.5.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL FamAgg_1.11.5.zip && rm FamAgg_1.11.5.tar.gz FamAgg_1.11.5.zip
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install for i386

* installing *source* package 'FamAgg' ...
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'pedigree' in package 'FamAgg'
in method for 'countGenerations' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'countGenerations' with signature '"pedigree"': no definition for class "pedigree"
in method for 'estimateGenerations' with signature '"pedigree"': no definition for class "pedigree"
in method for 'estimateGenerations' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'findFounders' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'findFounders' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'generationsFrom' with signature '"pedigree"': no definition for class "pedigree"
in method for 'generationsFrom' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getAncestors' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getAncestors' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getChildren' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getChildren' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getCommonAncestor' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getCommonAncestor' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getMissingMate' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getMissingMate' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getSiblings' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getSiblings' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getAll' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getAll' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getExternalMatched' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getExternalMatched' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getGenerationMatched' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getGenerationMatched' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getGenerationSexMatched' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getGenerationSexMatched' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getSexMatched' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getSexMatched' with signature '"pedigree"': no definition for class "pedigree"
** help
*** installing help indices
  converting help for package 'FamAgg'
    finding HTML links ... done
    FABinTestResults                        html  
    FAData-analysis                         html  
    FAData                                  html  
    FAGenIndexResults                       html  
    FAIncidenceRateResults                  html  
    FAKinGroupResults                       html  
    FAKinSumResults                         html  
    FAProbResults                           html  
    FAStdIncidenceRateResults               html  
    Pedigree-utils                          html  
    defineControls                          html  
    plotting-functions                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'FamAgg' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'FamAgg' as FamAgg_1.11.5.zip
* DONE (FamAgg)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'FamAgg' successfully unpacked and MD5 sums checked