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INSTALL report for piano on tokay1

This page was generated on 2018-04-12 13:22:45 -0400 (Thu, 12 Apr 2018).

Package 1037/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
piano 1.18.1
Leif Varemo
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/piano
Branch: RELEASE_3_6
Last Commit: aba5402
Last Changed Date: 2018-01-08 07:36:02 -0400 (Mon, 08 Jan 2018)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: piano
Version: 1.18.1
Command: rm -rf piano.buildbin-libdir && mkdir piano.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/piano_1.18.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=piano.buildbin-libdir --merge-multiarch piano_1.18.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL piano_1.18.1.zip && rm piano_1.18.1.tar.gz piano_1.18.1.zip
StartedAt: 2018-04-11 18:25:57 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:27:17 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 79.7 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf piano.buildbin-libdir && mkdir piano.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/piano_1.18.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=piano.buildbin-libdir --merge-multiarch piano_1.18.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL piano_1.18.1.zip  && rm piano_1.18.1.tar.gz piano_1.18.1.zip
###
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100  906k  100  906k    0     0  4246k      0 --:--:-- --:--:-- --:--:-- 4317k

install for i386

* installing *source* package 'piano' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'piano'
    finding HTML links ... done
    GSAheatmap                              html  
    GSAsummaryTable                         html  
    consensusHeatmap                        html  
    consensusScores                         html  
    diffExp                                 html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpiurvBu/R.INSTALLd2ca1574f8/piano/man/diffExp.Rd:75: missing file link 'limma'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpiurvBu/R.INSTALLd2ca1574f8/piano/man/diffExp.Rd:143: missing file link 'limma'
    extractFactors                          html  
    geneSetSummary                          html  
    gsa_input                               html  
    gsa_results                             html  
    loadGSC                                 html  
    loadMAdata                              html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpiurvBu/R.INSTALLd2ca1574f8/piano/man/loadMAdata.Rd:129: missing file link 'yeast2.db'
    networkPlot                             html  
    piano-package                           html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpiurvBu/R.INSTALLd2ca1574f8/piano/man/piano-package.Rd:25: missing file link 'limma-package'
    polarPlot                               html  
    runGSA                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpiurvBu/R.INSTALLd2ca1574f8/piano/man/runGSA.Rd:250: missing file link 'HTSanalyzeR-package'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpiurvBu/R.INSTALLd2ca1574f8/piano/man/runGSA.Rd:252: missing file link 'limma'
    runGSAhyper                             html  
    runQC                                   html  
    writeFilesForKiwi                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'piano' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'piano' as piano_1.18.1.zip
* DONE (piano)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'piano' successfully unpacked and MD5 sums checked
In R CMD INSTALL