Leif Varemo
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/piano |
| Branch: RELEASE_3_6 |
| Last Commit: aba5402 |
| Last Changed Date: 2018-01-08 07:36:02 -0400 (Mon, 08 Jan 2018) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:22:45 -0400 (Thu, 12 Apr 2018).
| Package 1037/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| piano 1.18.1 Leif Varemo
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: piano |
| Version: 1.18.1 |
| Command: rm -rf piano.buildbin-libdir piano.Rcheck && mkdir piano.buildbin-libdir piano.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=piano.buildbin-libdir piano_1.18.1.tar.gz >piano.Rcheck\00install.out 2>&1 && cp piano.Rcheck\00install.out piano-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=piano.buildbin-libdir --install="check:piano-install.out" --force-multiarch --no-vignettes --timings piano_1.18.1.tar.gz |
| StartedAt: 2018-04-12 02:09:30 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 02:12:08 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 158.0 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: piano.Rcheck |
| Warnings: 1 |
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### Running command:
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### rm -rf piano.buildbin-libdir piano.Rcheck && mkdir piano.buildbin-libdir piano.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=piano.buildbin-libdir piano_1.18.1.tar.gz >piano.Rcheck\00install.out 2>&1 && cp piano.Rcheck\00install.out piano-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=piano.buildbin-libdir --install="check:piano-install.out" --force-multiarch --no-vignettes --timings piano_1.18.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/piano.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'piano/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'piano' version '1.18.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'piano' can be installed ... WARNING
Found the following significant warnings:
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4SArOV/R.INSTALL2a0371f536c/piano/man/diffExp.Rd:75: missing file link 'limma'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4SArOV/R.INSTALL2a0371f536c/piano/man/diffExp.Rd:143: missing file link 'limma'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4SArOV/R.INSTALL2a0371f536c/piano/man/loadMAdata.Rd:129: missing file link 'yeast2.db'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4SArOV/R.INSTALL2a0371f536c/piano/man/piano-package.Rd:25: missing file link 'limma-package'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4SArOV/R.INSTALL2a0371f536c/piano/man/runGSA.Rd:250: missing file link 'HTSanalyzeR-package'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4SArOV/R.INSTALL2a0371f536c/piano/man/runGSA.Rd:252: missing file link 'limma'
See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/piano.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
loadMAdata: no visible global function definition for 'exprs<-'
Undefined global functions or variables:
exprs<-
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
diffExp 3.12 0.19 5.24
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
GSAheatmap 5.53 0.03 5.56
GSAsummaryTable 5.19 0.02 5.20
networkPlot 5.17 0.01 5.19
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
'C:/Users/biocbuild/bbs-3.6-bioc/meat/piano.Rcheck/00check.log'
for details.
piano.Rcheck/00install.out
install for i386
* installing *source* package 'piano' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'piano'
finding HTML links ... done
GSAheatmap html
GSAsummaryTable html
consensusHeatmap html
consensusScores html
diffExp html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4SArOV/R.INSTALL2a0371f536c/piano/man/diffExp.Rd:75: missing file link 'limma'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4SArOV/R.INSTALL2a0371f536c/piano/man/diffExp.Rd:143: missing file link 'limma'
extractFactors html
geneSetSummary html
gsa_input html
gsa_results html
loadGSC html
loadMAdata html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4SArOV/R.INSTALL2a0371f536c/piano/man/loadMAdata.Rd:129: missing file link 'yeast2.db'
networkPlot html
piano-package html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4SArOV/R.INSTALL2a0371f536c/piano/man/piano-package.Rd:25: missing file link 'limma-package'
polarPlot html
runGSA html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4SArOV/R.INSTALL2a0371f536c/piano/man/runGSA.Rd:250: missing file link 'HTSanalyzeR-package'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4SArOV/R.INSTALL2a0371f536c/piano/man/runGSA.Rd:252: missing file link 'limma'
runGSAhyper html
runQC html
writeFilesForKiwi html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'piano' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'piano' as piano_1.18.1.zip
* DONE (piano)
In R CMD INSTALL
In R CMD INSTALL
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piano.Rcheck/examples_i386/piano-Ex.timings
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piano.Rcheck/examples_x64/piano-Ex.timings
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