Back to Multiple platform build/check report for BioC 3.6
ABCDEFGHIJKLMNO[P]QRSTUVWXYZ

BUILD report for paxtoolsr on veracruz1

This page was generated on 2018-04-12 13:39:34 -0400 (Thu, 12 Apr 2018).

Package 1011/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
paxtoolsr 1.12.0
Augustin Luna
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/paxtoolsr
Branch: RELEASE_3_6
Last Commit: 4bf56d9
Last Changed Date: 2017-10-30 12:40:41 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  ERROR  skipped 
tokay1 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: paxtoolsr
Version: 1.12.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data paxtoolsr
StartedAt: 2018-04-11 21:07:04 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 21:07:24 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 20.2 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data paxtoolsr
###
##############################################################################
##############################################################################


* checking for file ‘paxtoolsr/DESCRIPTION’ ... OK
* preparing ‘paxtoolsr’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: rJava
Loading required package: XML
2018-04-11 21:07:13,677 1171 [main] INFO  org.biopax.paxtools.PaxtoolsMain  - toSif: not blacklisting ubiquitous molecules (no blacklist.txt found)
2018-04-11 21:07:13,881 1375 [main] INFO  org.biopax.paxtools.PaxtoolsMain  - toSifnx: not blacklisting ubiquitous molecules (no blacklist.txt found)
Quitting from lines 170-172 (using_paxtoolsr.Rmd) 
Error: processing vignette 'using_paxtoolsr.Rmd' failed with diagnostics:
Timeout was reached: Connection timed out after 10008 milliseconds
Execution halted