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INSTALL report for paxtoolsr on tokay1

This page was generated on 2018-04-12 13:25:09 -0400 (Thu, 12 Apr 2018).

Package 1011/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
paxtoolsr 1.12.0
Augustin Luna
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/paxtoolsr
Branch: RELEASE_3_6
Last Commit: 4bf56d9
Last Changed Date: 2017-10-30 12:40:41 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  ERROR  skipped 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] ERROR  skipped  skipped 
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: paxtoolsr
Version: 1.12.0
Command: rm -rf paxtoolsr.buildbin-libdir && mkdir paxtoolsr.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/paxtoolsr_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=paxtoolsr.buildbin-libdir --merge-multiarch paxtoolsr_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL paxtoolsr_1.12.0.zip && rm paxtoolsr_1.12.0.tar.gz paxtoolsr_1.12.0.zip
StartedAt: 2018-04-11 18:15:40 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:18:29 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 169.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf paxtoolsr.buildbin-libdir && mkdir paxtoolsr.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/paxtoolsr_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=paxtoolsr.buildbin-libdir --merge-multiarch paxtoolsr_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL paxtoolsr_1.12.0.zip  && rm paxtoolsr_1.12.0.tar.gz paxtoolsr_1.12.0.zip
###
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100 23.0M  100 23.0M    0     0   100M      0 --:--:-- --:--:-- --:--:--  102M

install for i386

* installing *source* package 'paxtoolsr' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'paxtoolsr'
    finding HTML links ... done
    addAttributeList                        html  
    convertSifToSpia                        html  
    convertSifnxIds                         html  
    convertToDF                             html  
    convertToDT                             html  
    downloadFile                            html  
    downloadPc2                             html  
    downloadSignedPC                        html  
    extractIds                              html  
    fetch                                   html  
    filterSif                               html  
    getCacheFiles                           html  
    getErrorMessage                         html  
    getNeighbors                            html  
    getPc                                   html  
    getPcUrl                                html  
    getShortestPathSif                      html  
    getSifInteractionCategories             html  
    graphPc                                 html  
    integrateBiopax                         html  
    loadSifInIgraph                         html  
    mapValues                               html  
    mergeBiopax                             html  
    pcDirections                            html  
    pcFormats                               html  
    pcGraphQueries                          html  
    processPcRequest                        html  
    readBiopax                              html  
    readGmt                                 html  
    readSbgn                                html  
    readSif                                 html  
    readSifnx                               html  
    searchListOfVectors                     html  
    searchPc                                html  
    skip_on_bioc                            html  
    splitSifnxByPathway                     html  
    summarize                               html  
    summarizeSif                            html  
    toGSEA                                  html  
    toLevel3                                html  
    toSBGN                                  html  
    toSif                                   html  
    toSifnx                                 html  
    topPathways                             html  
    traverse                                html  
    validate                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'paxtoolsr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'paxtoolsr' as paxtoolsr_1.12.0.zip
* DONE (paxtoolsr)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'paxtoolsr' successfully unpacked and MD5 sums checked
In R CMD INSTALL