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CHECK report for NTW on tokay1

This page was generated on 2018-04-12 13:20:16 -0400 (Thu, 12 Apr 2018).

Package 951/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
NTW 1.28.0
Yuanhua Liu
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/NTW
Branch: RELEASE_3_6
Last Commit: 4d2318a
Last Changed Date: 2017-10-30 12:39:30 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: NTW
Version: 1.28.0
Command: rm -rf NTW.buildbin-libdir NTW.Rcheck && mkdir NTW.buildbin-libdir NTW.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=NTW.buildbin-libdir NTW_1.28.0.tar.gz >NTW.Rcheck\00install.out 2>&1 && cp NTW.Rcheck\00install.out NTW-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=NTW.buildbin-libdir --install="check:NTW-install.out" --force-multiarch --no-vignettes --timings NTW_1.28.0.tar.gz
StartedAt: 2018-04-12 01:51:23 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 01:52:07 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 44.3 seconds
RetCode: 0
Status:  OK  
CheckDir: NTW.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   rm -rf NTW.buildbin-libdir NTW.Rcheck && mkdir NTW.buildbin-libdir NTW.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=NTW.buildbin-libdir NTW_1.28.0.tar.gz >NTW.Rcheck\00install.out 2>&1 && cp NTW.Rcheck\00install.out NTW-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=NTW.buildbin-libdir --install="check:NTW-install.out" --force-multiarch --no-vignettes --timings NTW_1.28.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/NTW.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'NTW/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'NTW' version '1.28.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'NTW' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
    user system elapsed
NTW  5.8      0     5.8
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
    user system elapsed
NTW 10.5   0.01   10.52
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

NTW.Rcheck/00install.out


install for i386

* installing *source* package 'NTW' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'NTW'
    finding HTML links ... done
    A.estimation.Srow                       html  
    AP.estimation.Srow                      html  
    NTW-package                             html  
    NTW                                     html  
    P.preestimation                         html  
    comb.matrix                             html  
    methods.regression                      html  
    patterns.priorA                         html  
    sos.data                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'NTW' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'NTW' as NTW_1.28.0.zip
* DONE (NTW)
In R CMD INSTALL
In R CMD INSTALL

Tests output


Example timings

NTW.Rcheck/examples_i386/NTW-Ex.timings

nameusersystemelapsed
A.estimation.Srow0.160.000.16
AP.estimation.Srow1.280.021.30
NTW5.80.05.8
P.preestimation0.010.000.02
comb.matrix000
sos.data000

NTW.Rcheck/examples_x64/NTW-Ex.timings

nameusersystemelapsed
A.estimation.Srow0.360.020.38
AP.estimation.Srow2.020.002.02
NTW10.50 0.0110.52
P.preestimation000
comb.matrix000
sos.data000