NTW

DOI: 10.18129/B9.bioc.NTW    

Predict gene network using an Ordinary Differential Equation (ODE) based method

Bioconductor version: Release (3.6)

This package predicts the gene-gene interaction network and identifies the direct transcriptional targets of the perturbation using an ODE (Ordinary Differential Equation) based method.

Author: Wei Xiao, Yin Jin, Darong Lai, Xinyi Yang, Yuanhua Liu, Christine Nardini

Maintainer: Yuanhua Liu <liuyuanhua at picb.ac.cn>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("NTW")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NTW")

 

PDF	R Script	NTW vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	Preprocessing, Software
Version	1.28.0
In Bioconductor since	BioC 2.7 (R-2.12) (7.5 years)
License	GPL-2
Depends	R (>= 2.3.0)
Imports	mvtnorm, stats, utils
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	NTW_1.28.0.tar.gz
Windows Binary	NTW_1.28.0.zip
Mac OS X 10.11 (El Capitan)	NTW_1.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/NTW
Package Short Url	http://bioconductor.org/packages/NTW/
Package Downloads Report	Download Stats