Hervé Pagès
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/DelayedArray |
| Branch: RELEASE_3_6 |
| Last Commit: ffe932e |
| Last Changed Date: 2017-11-01 17:13:55 -0400 (Wed, 01 Nov 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:29:06 -0400 (Thu, 12 Apr 2018).
| Package 348/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| DelayedArray 0.4.1 Hervé Pagès
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: DelayedArray |
| Version: 0.4.1 |
| Command: rm -rf DelayedArray.buildbin-libdir DelayedArray.Rcheck && mkdir DelayedArray.buildbin-libdir DelayedArray.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DelayedArray.buildbin-libdir DelayedArray_0.4.1.tar.gz >DelayedArray.Rcheck\00install.out 2>&1 && cp DelayedArray.Rcheck\00install.out DelayedArray-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=DelayedArray.buildbin-libdir --install="check:DelayedArray-install.out" --force-multiarch --no-vignettes --timings DelayedArray_0.4.1.tar.gz |
| StartedAt: 2018-04-11 23:24:41 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 23:43:10 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 1109.0 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: DelayedArray.Rcheck |
| Warnings: 2 |
##############################################################################
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###
### Running command:
###
### rm -rf DelayedArray.buildbin-libdir DelayedArray.Rcheck && mkdir DelayedArray.buildbin-libdir DelayedArray.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DelayedArray.buildbin-libdir DelayedArray_0.4.1.tar.gz >DelayedArray.Rcheck\00install.out 2>&1 && cp DelayedArray.Rcheck\00install.out DelayedArray-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=DelayedArray.buildbin-libdir --install="check:DelayedArray-install.out" --force-multiarch --no-vignettes --timings DelayedArray_0.4.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/DelayedArray.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DelayedArray/DESCRIPTION' ... OK
* this is package 'DelayedArray' version '0.4.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DelayedArray' can be installed ... WARNING
Found the following significant warnings:
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-class.Rd:118: missing file link 'HDF5Array'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-class.Rd:200: missing file link 'HDF5Array'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-class.Rd:202: missing file link 'DataFrame'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-utils.Rd:88: missing file link 'Ops'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-utils.Rd:89: missing file link 'Math'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-utils.Rd:89: missing file link 'Math2'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-utils.Rd:100: missing file link 'Summary'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-utils.Rd:114: missing file link 'is.na'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-utils.Rd:114: missing file link '!'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-utils.Rd:116: missing file link '%*%'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-utils.Rd:119: missing file link 'rowSums'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-utils.Rd:120: missing file link 'rowMaxs'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-utils.Rd:133: missing file link 'HDF5Array'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-utils.Rd:136: missing file link 'Ops'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-utils.Rd:137: missing file link 'Math'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-utils.Rd:137: missing file link 'Math2'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/RleArray-class.Rd:65: missing file link 'Rle'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/RleArray-class.Rd:88: missing file link 'Rle'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/RleArray-class.Rd:98: missing file link 'HDF5Array'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/RleArray-class.Rd:100: missing file link 'DataFrame'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/bind-arrays.Rd:40: missing file link 'rbind'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/realize.Rd:79: missing file link 'HDF5Array'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/subset_seed_as_array.Rd:51: missing file link 'DataFrame'
See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/DelayedArray.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported objects imported by ':::' calls:
'BiocGenerics:::testPackage' 'S4Vectors:::anyMissing'
'S4Vectors:::anyMissingOrOutside' 'S4Vectors:::diffWithInitialZero'
'S4Vectors:::extract_positions_from_Rle' 'S4Vectors:::sapply_isNULL'
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented S4 methods:
generic '[<-' and siglist 'DelayedArray'
generic 'dbinom' and siglist 'DelayedArray'
generic 'dlogis' and siglist 'DelayedArray'
generic 'dpois' and siglist 'DelayedArray'
generic 'pbinom' and siglist 'DelayedArray'
generic 'plogis' and siglist 'DelayedArray'
generic 'ppois' and siglist 'DelayedArray'
generic 'qbinom' and siglist 'DelayedArray'
generic 'qlogis' and siglist 'DelayedArray'
generic 'qpois' and siglist 'DelayedArray'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
DelayedArray-class 8.11 0.39 9.61
DelayedArray-utils 5.92 1.67 7.61
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
DelayedArray-class 6.62 0.54 7.28
DelayedArray-utils 5.47 1.20 6.68
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'run_unitTests.R'
OK
** running tests for arch 'x64' ...
Running 'run_unitTests.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 1 NOTE
See
'C:/Users/biocbuild/bbs-3.6-bioc/meat/DelayedArray.Rcheck/00check.log'
for details.
DelayedArray.Rcheck/00install.out
install for i386
* installing *source* package 'DelayedArray' ...
** R
** inst
** preparing package for lazy loading
in method for 'coerce' with signature '"DelayedMatrix","dgCMatrix"': no definition for class "dgCMatrix"
in method for 'coerce' with signature '"DelayedMatrix","sparseMatrix"': no definition for class "sparseMatrix"
Creating a new generic function for 'apply' in package 'DelayedArray'
Creating a generic function for 'dbinom' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'pbinom' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qbinom' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'dpois' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'ppois' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qpois' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'dlogis' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'plogis' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qlogis' from package 'stats' in package 'DelayedArray'
Creating a new generic function for 'rowMaxs' in package 'DelayedArray'
Creating a new generic function for 'colMaxs' in package 'DelayedArray'
Creating a new generic function for 'rowMins' in package 'DelayedArray'
Creating a new generic function for 'colMins' in package 'DelayedArray'
Creating a new generic function for 'rowRanges' in package 'DelayedArray'
Creating a new generic function for 'colRanges' in package 'DelayedArray'
** help
*** installing help indices
converting help for package 'DelayedArray'
finding HTML links ... done
Array-class html
ArrayGrid-class html
DelayedArray-class html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-class.Rd:118: missing file link 'HDF5Array'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-class.Rd:200: missing file link 'HDF5Array'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-class.Rd:202: missing file link 'DataFrame'
DelayedArray-utils html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-utils.Rd:88: missing file link 'Ops'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-utils.Rd:89: missing file link 'Math'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-utils.Rd:89: missing file link 'Math2'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-utils.Rd:100: missing file link 'Summary'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-utils.Rd:114: missing file link 'is.na'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-utils.Rd:114: missing file link '!'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-utils.Rd:116: missing file link '%*%'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-utils.Rd:119: missing file link 'rowSums'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-utils.Rd:120: missing file link 'rowMaxs'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-utils.Rd:133: missing file link 'HDF5Array'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-utils.Rd:136: missing file link 'Ops'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-utils.Rd:137: missing file link 'Math'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/DelayedArray-utils.Rd:137: missing file link 'Math2'
RleArray-class html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/RleArray-class.Rd:65: missing file link 'Rle'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/RleArray-class.Rd:88: missing file link 'Rle'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/RleArray-class.Rd:98: missing file link 'HDF5Array'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/RleArray-class.Rd:100: missing file link 'DataFrame'
bind-arrays html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/bind-arrays.Rd:40: missing file link 'rbind'
block_processing html
realize html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/realize.Rd:79: missing file link 'HDF5Array'
subset_seed_as_array html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpm0QLLc/R.INSTALL1d7415233b11/DelayedArray/man/subset_seed_as_array.Rd:51: missing file link 'DataFrame'
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'DelayedArray' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DelayedArray' as DelayedArray_0.4.1.zip
* DONE (DelayedArray)
In R CMD INSTALL
In R CMD INSTALL
|
DelayedArray.Rcheck/tests_i386/run_unitTests.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> require("DelayedArray") || stop("unable to load DelayedArray package")
Loading required package: DelayedArray
Loading required package: matrixStats
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colMeans, colSums, colnames, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
setdiff, sort, table, tapply, union, unique, unsplit, which,
which.max, which.min
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
Loading required package: IRanges
Attaching package: 'DelayedArray'
The following objects are masked from 'package:matrixStats':
colMaxs, colMins, colRanges, rowMaxs, rowMins, rowRanges
The following object is masked from 'package:base':
apply
[1] TRUE
> DelayedArray:::.test()
------------------------------------------------------------------
Running tests with realization backend set to "RleArray" ...
Attaching package: 'genefilter'
The following objects are masked from 'package:matrixStats':
rowSds, rowVars
RUNIT TEST PROTOCOL -- Wed Apr 11 23:29:29 2018
***********************************************
Number of test functions: 24
Number of errors: 0
Number of failures: 0
1 Test Suite :
DelayedArray RUnit Tests - 24 test functions, 0 errors, 0 failures
------------------------------------------------------------------
Running tests with realization backend set to "HDF5Array" ...
Loading required package: rhdf5
RUNIT TEST PROTOCOL -- Wed Apr 11 23:34:28 2018
***********************************************
Number of test functions: 24
Number of errors: 0
Number of failures: 0
1 Test Suite :
DelayedArray RUnit Tests - 24 test functions, 0 errors, 0 failures
Number of test functions: 24
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
428.68 15.35 447.12
|
DelayedArray.Rcheck/tests_x64/run_unitTests.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> require("DelayedArray") || stop("unable to load DelayedArray package")
Loading required package: DelayedArray
Loading required package: matrixStats
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colMeans, colSums, colnames, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
setdiff, sort, table, tapply, union, unique, unsplit, which,
which.max, which.min
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
Loading required package: IRanges
Attaching package: 'DelayedArray'
The following objects are masked from 'package:matrixStats':
colMaxs, colMins, colRanges, rowMaxs, rowMins, rowRanges
The following object is masked from 'package:base':
apply
[1] TRUE
> DelayedArray:::.test()
------------------------------------------------------------------
Running tests with realization backend set to "RleArray" ...
Attaching package: 'genefilter'
The following objects are masked from 'package:matrixStats':
rowSds, rowVars
RUNIT TEST PROTOCOL -- Wed Apr 11 23:37:22 2018
***********************************************
Number of test functions: 24
Number of errors: 0
Number of failures: 0
1 Test Suite :
DelayedArray RUnit Tests - 24 test functions, 0 errors, 0 failures
------------------------------------------------------------------
Running tests with realization backend set to "HDF5Array" ...
Loading required package: rhdf5
RUNIT TEST PROTOCOL -- Wed Apr 11 23:43:06 2018
***********************************************
Number of test functions: 24
Number of errors: 0
Number of failures: 0
1 Test Suite :
DelayedArray RUnit Tests - 24 test functions, 0 errors, 0 failures
Number of test functions: 24
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
499.62 15.23 517.71
|
|
DelayedArray.Rcheck/examples_i386/DelayedArray-Ex.timings
|
DelayedArray.Rcheck/examples_x64/DelayedArray-Ex.timings
|