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BioC 3.6: INSTALL report for simpleaffy on malbec1

This page was generated on 2017-08-16 13:17:01 -0400 (Wed, 16 Aug 2017).

Package 1251/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
simpleaffy 2.53.0
Crispin Miller
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/simpleaffy
Last Changed Rev: 129129 / Revision: 131943
Last Changed Date: 2017-04-24 15:50:57 -0400 (Mon, 24 Apr 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64 [ OK ] OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: simpleaffy
Version: 2.53.0
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD INSTALL simpleaffy
StartedAt: 2017-08-15 18:06:09 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 18:06:24 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 14.6 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD INSTALL simpleaffy
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.6-bioc/R/library’
* installing *source* package ‘simpleaffy’ ...
** libs
gcc -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c simpleaffy.c -o simpleaffy.o
simpleaffy.c: In function ‘bgmas’:
simpleaffy.c:440:30: warning: passing argument 1 of ‘REprintf’ from incompatible pointer type [-Wincompatible-pointer-types]
     if(gn >= ngrid) REprintf(stderr,"Really ouch! %d %d\n",gn,ends[gn]);
                              ^
In file included from /home/biocbuild/bbs-3.6-bioc/R/include/R.h:88:0,
                 from simpleaffy.c:5:
/home/biocbuild/bbs-3.6-bioc/R/include/R_ext/Print.h:43:6: note: expected ‘const char *’ but argument is of type ‘struct _IO_FILE *’
 void REprintf(const char *, ...);
      ^
gcc -shared -L/home/biocbuild/bbs-3.6-bioc/R/lib -L/usr/local/lib -o simpleaffy.so simpleaffy.o -L/home/biocbuild/bbs-3.6-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.6-bioc/R/library/simpleaffy/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (simpleaffy)