Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q [R] S  T  U  V  W  X  Y  Z 

BioC 3.6: CHECK report for RedeR on tokay1

This page was generated on 2017-08-16 13:29:46 -0400 (Wed, 16 Aug 2017).

Package 1108/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RedeR 1.25.1
Mauro Castro
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RedeR
Last Changed Rev: 129210 / Revision: 131943
Last Changed Date: 2017-04-26 23:15:10 -0400 (Wed, 26 Apr 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: RedeR
Version: 1.25.1
Command: rm -rf RedeR.buildbin-libdir RedeR.Rcheck && mkdir RedeR.buildbin-libdir RedeR.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RedeR.buildbin-libdir RedeR_1.25.1.tar.gz >RedeR.Rcheck\00install.out 2>&1 && cp RedeR.Rcheck\00install.out RedeR-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=RedeR.buildbin-libdir --install="check:RedeR-install.out" --force-multiarch --no-vignettes --timings RedeR_1.25.1.tar.gz
StartedAt: 2017-08-16 01:56:00 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 01:56:55 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 55.0 seconds
RetCode: 0
Status:  OK  
CheckDir: RedeR.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf RedeR.buildbin-libdir RedeR.Rcheck && mkdir RedeR.buildbin-libdir RedeR.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RedeR.buildbin-libdir RedeR_1.25.1.tar.gz >RedeR.Rcheck\00install.out 2>&1 && cp RedeR.Rcheck\00install.out RedeR-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=RedeR.buildbin-libdir --install="check:RedeR-install.out" --force-multiarch --no-vignettes --timings RedeR_1.25.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/RedeR.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RedeR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RedeR' version '1.25.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RedeR' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.8Mb
  sub-directories of 1Mb or more:
    data   3.3Mb
    java   4.3Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/RedeR.Rcheck/00check.log'
for details.


RedeR.Rcheck/00install.out:


install for i386

* installing *source* package 'RedeR' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'RedeR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RedeR' as RedeR_1.25.1.zip
* DONE (RedeR)

RedeR.Rcheck/examples_i386/RedeR-Ex.timings:

nameusersystemelapsed
RedPort-class000
RedPort0.090.000.10
RedeR.data0.660.020.67
addEdgeBetweenContainers0.010.000.02
addEdges0.020.000.01
addGraph0.000.010.02
addLegend0.020.000.01
addNodes0.010.000.02
addSeries0.020.000.01
addSubgraph0.020.000.01
addSubgraph.list0.020.000.02
att0.560.020.58
calld000
cea0.020.000.02
deSelectEdges0.020.000.01
deSelectGraph0.020.000.02
deSelectNodes0.010.000.01
deleteEdges0.020.000.02
deleteNodes0.000.020.01
deleteSelectedEdges000
deleteSelectedNodes0.010.000.02
duplicateGraph0.020.000.02
exitd000
getContainerComponets0.020.000.01
getEdgeIDs0.020.000.01
getEdges0.010.000.02
getGraph0.020.000.01
getNodeIDs0.010.000.02
getNodes0.020.000.01
getSourceEdgeIDs0.000.010.02
getTargetEdgeIDs0.020.000.02
gtoy.rm000
isDynamicsActive000
mergeNodes0.020.000.02
mergeOutEdges0.010.000.01
nestNodes0.000.020.02
nesthc1.720.061.78
ping000
relax0.020.000.02
resetd000
selectAllEdges0.000.020.01
selectAllNodes0.010.000.02
selectEdges0.020.000.01
selectGraph0.010.000.02
selectNodes0.000.010.01
setArrowDirection0.030.000.03
subg0.080.000.08
updateContainerSize0.000.020.02
updateGraph0.030.000.04
version000

RedeR.Rcheck/examples_x64/RedeR-Ex.timings:

nameusersystemelapsed
RedPort-class000
RedPort0.130.000.13
RedeR.data0.530.020.55
addEdgeBetweenContainers0.030.000.03
addEdges0.010.000.01
addGraph0.020.000.02
addLegend0.020.000.01
addNodes0.010.000.02
addSeries0.020.000.02
addSubgraph0.010.000.01
addSubgraph.list0.020.000.02
att0.690.000.68
calld000
cea0.000.010.02
deSelectEdges000
deSelectGraph000
deSelectNodes000
deleteEdges0.010.000.02
deleteNodes000
deleteSelectedEdges000
deleteSelectedNodes0.020.000.02
duplicateGraph0.010.000.01
exitd000
getContainerComponets0.020.000.02
getEdgeIDs0.010.000.02
getEdges0.020.000.01
getGraph0.010.000.02
getNodeIDs0.020.000.01
getNodes0.010.000.02
getSourceEdgeIDs0.020.000.01
getTargetEdgeIDs000
gtoy.rm000
isDynamicsActive000
mergeNodes0.010.000.02
mergeOutEdges0.020.000.01
nestNodes0.010.000.02
nesthc2.070.022.07
ping000
relax0.010.000.04
resetd000
selectAllEdges0.020.000.01
selectAllNodes0.010.000.02
selectEdges0.020.000.01
selectGraph0.020.000.01
selectNodes0.010.000.02
setArrowDirection0.000.020.02
subg0.080.000.08
updateContainerSize0.010.000.01
updateGraph0.050.010.07
version0.020.000.01