BioC 3.5: CHECK report for supraHex on veracruz2

Package: supraHex

Version: 1.14.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings supraHex_1.14.0.tar.gz

StartedAt: 2017-08-16 08:41:54 -0400 (Wed, 16 Aug 2017)

EndedAt: 2017-08-16 08:42:48 -0400 (Wed, 16 Aug 2017)

EllapsedTime: 54.4 seconds

RetCode: 0

Status:  OK

CheckDir: supraHex.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings supraHex_1.14.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.5-bioc/meat/supraHex.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘supraHex’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (supraHex)

name	user	system	elapsed
sBMH	0.294	0.006	0.319
sCompReorder	1.446	0.035	1.515
sDistance	0.095	0.002	0.105
sDmat	0.121	0.003	0.123
sDmatCluster	0.233	0.003	0.243
sDmatMinima	0.138	0.002	0.141
sHexDist	0.006	0.000	0.006
sHexGrid	0.003	0.000	0.004
sHexGridVariant	0.005	0.001	0.005
sHexPolygon	0.002	0.000	0.003
sInitial	0.002	0.000	0.002
sMapOverlay	0.445	0.006	0.468
sNeighAny	0.004	0.000	0.007
sNeighDirect	0.004	0.001	0.004
sPipeline	1.783	0.016	1.852
sTopology	0.019	0.004	0.023
sTrainBatch	0.040	0.001	0.041
sTrainSeq	0.364	0.004	0.374
sTrainology	0.008	0.001	0.008
sWriteData	0.312	0.004	0.336
visColoralpha	0.005	0.000	0.005
visColorbar	0.029	0.000	0.029
visColormap	0.004	0.000	0.004
visCompReorder	1.187	0.046	1.261
visDmatCluster	0.317	0.030	0.359
visDmatHeatmap	0.189	0.005	0.203
visHeatmap	0.105	0.001	0.107
visHeatmapAdv	1.052	0.005	1.094
visHexAnimate	0.001	0.000	0.002
visHexBarplot	0.692	0.023	0.739
visHexComp	0.114	0.002	0.118
visHexGrid	0.101	0.003	0.115
visHexMapping	1.290	0.050	1.391
visHexMulComp	0.877	0.027	0.916
visHexPattern	1.616	0.070	1.725
visKernels	0.008	0.004	0.012
visTreeBSclust	0.986	0.003	1.037
visTreeBootstrap	0.795	0.004	0.824
visVp	0.029	0.004	0.036