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BioC 3.5: CHECK report for supraHex on malbec2

This page was generated on 2017-08-16 13:15:14 -0400 (Wed, 16 Aug 2017).

Package 1288/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
supraHex 1.14.0
Hai Fang
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/supraHex
Last Changed Rev: 129126 / Revision: 131943
Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: supraHex
Version: 1.14.0
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings supraHex_1.14.0.tar.gz
StartedAt: 2017-08-16 02:33:30 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 02:34:12 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 42.0 seconds
RetCode: 0
Status:  OK 
CheckDir: supraHex.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings supraHex_1.14.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.5-bioc/meat/supraHex.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

supraHex.Rcheck/00install.out:

* installing *source* package ‘supraHex’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (supraHex)

supraHex.Rcheck/supraHex-Ex.timings:

nameusersystemelapsed
sBMH0.2360.0000.236
sCompReorder1.0400.0001.039
sDistance0.0760.0000.075
sDmat0.0920.0000.089
sDmatCluster0.1840.0000.183
sDmatMinima0.1000.0040.105
sHexDist0.0040.0000.002
sHexGrid0.0000.0000.002
sHexGridVariant0.0000.0000.004
sHexPolygon0.0000.0000.002
sInitial0.0040.0000.002
sMapOverlay0.3680.0000.366
sNeighAny0.0040.0000.005
sNeighDirect0.0040.0000.002
sPipeline1.2880.0121.301
sTopology0.0120.0000.014
sTrainBatch0.0320.0000.031
sTrainSeq0.2720.0000.271
sTrainology0.0040.0000.002
sWriteData0.2200.0000.222
visColoralpha0.0040.0000.005
visColorbar0.0280.0000.031
visColormap0.0040.0000.004
visCompReorder0.9320.0000.934
visDmatCluster0.2120.0080.221
visDmatHeatmap0.1320.0080.143
visHeatmap0.0720.0000.074
visHeatmapAdv0.8560.0000.856
visHexAnimate0.0040.0000.002
visHexBarplot0.6720.0040.676
visHexComp0.0800.0040.081
visHexGrid0.0720.0000.074
visHexMapping1.0000.0121.012
visHexMulComp0.6720.0080.682
visHexPattern1.5240.0201.546
visKernels0.0120.0000.009
visTreeBSclust0.7600.0040.766
visTreeBootstrap0.6680.0000.670
visVp0.0160.0040.020