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BioC 3.4: CHECK report for wateRmelon on tokay1

This page was generated on 2017-04-15 16:17:35 -0400 (Sat, 15 Apr 2017).

Package 1280/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
wateRmelon 1.18.0
Leo
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/wateRmelon
Last Changed Rev: 122710 / Revision: 128728
Last Changed Date: 2016-10-17 14:45:06 -0400 (Mon, 17 Oct 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: wateRmelon
Version: 1.18.0
Command: rm -rf wateRmelon.buildbin-libdir wateRmelon.Rcheck && mkdir wateRmelon.buildbin-libdir wateRmelon.Rcheck && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=wateRmelon.buildbin-libdir wateRmelon_1.18.0.tar.gz >wateRmelon.Rcheck\00install.out 2>&1 && cp wateRmelon.Rcheck\00install.out wateRmelon-install.out && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD check --library=wateRmelon.buildbin-libdir --install="check:wateRmelon-install.out" --force-multiarch --no-vignettes --timings wateRmelon_1.18.0.tar.gz
StartedAt: 2017-04-15 01:18:36 -0400 (Sat, 15 Apr 2017)
EndedAt: 2017-04-15 01:25:20 -0400 (Sat, 15 Apr 2017)
EllapsedTime: 403.2 seconds
RetCode: 0
Status:  OK  
CheckDir: wateRmelon.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf wateRmelon.buildbin-libdir wateRmelon.Rcheck && mkdir wateRmelon.buildbin-libdir wateRmelon.Rcheck && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=wateRmelon.buildbin-libdir wateRmelon_1.18.0.tar.gz >wateRmelon.Rcheck\00install.out 2>&1 && cp wateRmelon.Rcheck\00install.out wateRmelon-install.out  && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD check --library=wateRmelon.buildbin-libdir --install="check:wateRmelon-install.out" --force-multiarch --no-vignettes --timings wateRmelon_1.18.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.4-bioc/meat/wateRmelon.Rcheck'
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'wateRmelon/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'wateRmelon' version '1.18.0'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
  'Biobase' 'limma' 'matrixStats' 'methylumi' 'lumi' 'ROC'
  'IlluminaHumanMethylation450kanno.ilmn12.hg19' 'illuminaio'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'wateRmelon' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 14.6Mb
  sub-directories of 1Mb or more:
    data  14.0Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'Biobase'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  'IlluminaHumanMethylation450kanno.ilmn12.hg19' 'ROC' 'illuminaio'
  'limma' 'lumi' 'matrixStats' 'methods' 'methylumi'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Missing object imported by a ':::' call: 'minfi:::.isRG'
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
DataToNChannelSet2: no visible global function definition for 'is'
DataToNChannelSet2: no visible global function definition for 'new'
IDATsToMatrices2: no visible global function definition for '.mclapply'
IDATtoMatrix2 : <anonymous>: no visible global function definition for
  'readIDAT'
NChannelSetToMethyLumiSet2: no visible global function definition for
  'new'
NChannelSetToMethyLumiSet2: no visible global function definition for
  'betas'
NChannelSetToMethyLumiSet2: no visible global function definition for
  'methylated'
NChannelSetToMethyLumiSet2: no visible global function definition for
  'unmethylated'
NChannelSetToMethyLumiSet2: no visible global function definition for
  'pval.detect<-'
adaptRefQuantiles: no visible global function definition for
  'na.exclude'
aoget: no visible global function definition for 'read.csv'
beadcount: no visible global function definition for 'getProbeInfo'
beadcount: no visible global function definition for 'getManifestInfo'
bgIntensitySwan.methylumi: no visible global function definition for
  'colMedians'
bscon_methy: no visible global function definition for
  'intensitiesByChannel'
bscon_methy: no visible global function definition for 'QCdata'
bscon_methy: no visible binding for global variable 'median'
bscon_minfi : csp.green: no visible global function definition for
  'getRed'
bscon_minfi : csp.green: no visible global function definition for
  'getGreen'
bscon_minfi : csp.green : <anonymous>: no visible global function
  definition for 'getControlAddress'
bscon_minfi : csp.red: no visible global function definition for
  'getRed'
bscon_minfi : csp.red: no visible global function definition for
  'getGreen'
bscon_minfi : csp.red : <anonymous>: no visible global function
  definition for 'getControlAddress'
bscon_minfi: no visible binding for global variable 'median'
combo : <anonymous>: no visible global function definition for 'QCdata'
combo: no visible global function definition for 'new'
combo: no visible global function definition for 'QCdata<-'
db1: no visible global function definition for 'normalizeQuantiles'
detectionPval.filter: no visible global function definition for
  'write.table'
dfort: no visible binding for global variable
  'IlluminaHumanMethylation450kanno.ilmn12.hg19'
dfs2: no visible global function definition for 'density'
dfsfit: no visible global function definition for 'lm'
genall: no visible global function definition for 'betas'
genkme: no visible global function definition for 'kmeans'
genme: no visible global function definition for 'kmeans'
getControlProbes2: no visible global function definition for 'new'
getMethylationBeadMappers2 : <anonymous>: no visible global function
  definition for 'data'
getMethylationBeadMappers2 : <anonymous>: no visible binding for global
  variable 'hm27.ordering'
getMethylationBeadMappers2 : <anonymous>: no visible binding for global
  variable 'hm450.ordering'
getMethylationBeadMappers2 : <anonymous>: no visible binding for global
  variable 'epic.ordering'
getMethylationBeadMappers2 : <anonymous>: no visible binding for global
  variable 'hm27.controls'
getMethylationBeadMappers2 : <anonymous>: no visible binding for global
  variable 'hm450.controls'
getMethylationBeadMappers2 : <anonymous>: no visible binding for global
  variable 'epic.controls'
getMethylumiBeta: no visible global function definition for
  'unmethylated'
getMethylumiBeta: no visible global function definition for
  'methylated'
getQuantiles: no visible global function definition for 'quantile'
got: no visible global function definition for 'getProbeInfo'
iqrFun: no visible binding for global variable 'quantile'
loadMethylumi2: no visible global function definition for
  'addControlData2methyLumiM'
lumiMethyR2: no visible global function definition for 'methylumiR'
lumiMethyR2: no visible global function definition for 'as'
lumiMethyR2: no visible global function definition for
  'addAnnotationInfo'
lumiMethyR2: no visible global function definition for 'is'
lumiMethyR2: no visible global function definition for 'controlData<-'
methylumIDATepic: no visible global function definition for 'is'
oxyscale: no visible global function definition for 'betas'
oxyscale: no visible global function definition for 'quantile'
oxyscale: no visible global function definition for 'betas<-'
pcouted: no visible binding for global variable 'mad'
pcouted: no visible binding for global variable 'median'
pcouted: no visible global function definition for 'qchisq'
pcouted: no visible global function definition for 'median'
pcouted: no visible global function definition for 'quantile'
pcouted: no visible global function definition for 'mad'
pipelineIlluminaMethylation.batch: possible error in
  preprocessIlluminaMethylation(path2data = path2data, path2controlData
  = path2controlData, projectName = projectName, nbBeads.threshold =
  nbBeads.threshold, detectionPval.threshold = detectionPval.threshold,
  detectionPval.perc.threshold = detectionPval.perc.threshold,
  sample2keep = path2sampleList, probeSNP_LIST, XY.filtering =
  XY.filtering, colorBias.corr = colorBias.corr, bg.adjust = bg.adjust,
  PATH = PATH_RES): unused arguments (path2data = path2data,
  path2controlData = path2controlData, projectName = projectName)
pipelineIlluminaMethylation.batch: no visible binding for global
  variable 'PATH_RES'
pipelineIlluminaMethylation.batch: no visible global function
  definition for 'write.csv'
pipelineIlluminaMethylation.batch: no visible binding for global
  variable 'probeAnnotationsCategory'
preprocessIlluminaMethylation: no visible binding for global variable
  'projectName'
preprocessIlluminaMethylation: no visible global function definition
  for 'read.table'
preprocessIlluminaMethylation: no visible global function definition
  for 'as'
preprocessIlluminaMethylation: no visible global function definition
  for 'lumiMethyB'
qual: no visible binding for global variable 'sd'
readEPIC: no visible binding for global variable 'n.sd'
seabird: no visible global function definition for 'pAUC'
seabird: no visible global function definition for 'rocdemo.sca'
sextest : mod2: no visible global function definition for 't.test'
summits: no visible global function definition for 'density'
BMIQ,MethyLumiSet : <anonymous>: no visible global function definition
  for 'warn'
BMIQ,MethyLumiSet: no visible global function definition for 'betas<-'
BMIQ,MethylSet: no visible global function definition for 'getBeta'
BMIQ,MethylSet : <anonymous>: no visible global function definition for
  'warn'
agep,MethylSet: no visible global function definition for 'getBeta'
as.methylumi,MethyLumiSet: no visible global function definition for
  'methylated'
as.methylumi,MethyLumiSet: no visible global function definition for
  'unmethylated'
as.methylumi,MethyLumiSet: no visible global function definition for
  'betas'
as.methylumi,MethyLumiSet: no visible global function definition for
  'pvals'
as.methylumi,MethyLumiSet: no visible global function definition for
  'QCdata'
as.methylumi,MethylSet: no visible global function definition for
  'getMeth'
as.methylumi,MethylSet: no visible global function definition for
  'getUnmeth'
as.methylumi,MethylSet: no visible global function definition for
  'getBeta'
betaqn,MethyLumiSet: no visible global function definition for
  'betas<-'
betaqn,MethyLumiSet: no visible global function definition for 'betas'
betaqn,MethylSet: no visible global function definition for 'getBeta'
betaqn,RGChannelSet: no visible global function definition for
  'getBeta'
colnames,MethyLumiSet: no visible global function definition for
  'methylated'
danen,MethyLumiSet: no visible global function definition for
  'methylated'
danen,MethyLumiSet: no visible global function definition for
  'unmethylated'
danen,MethyLumiSet: no visible global function definition for 'betas<-'
danen,MethyLumiSet: no visible global function definition for
  'methylated<-'
danen,MethyLumiSet: no visible global function definition for
  'unmethylated<-'
danen,MethylSet: no visible global function definition for 'getMeth'
danen,MethylSet: no visible global function definition for 'getUnmeth'
danen,RGChannelSet: no visible global function definition for
  'preprocessRaw'
danes,MethyLumiSet: no visible global function definition for
  'methylated'
danes,MethyLumiSet: no visible global function definition for
  'unmethylated'
danes,MethyLumiSet: no visible global function definition for 'betas<-'
danes,MethyLumiSet: no visible global function definition for
  'methylated<-'
danes,MethyLumiSet: no visible global function definition for
  'unmethylated<-'
danes,MethylSet: no visible global function definition for 'getMeth'
danes,MethylSet: no visible global function definition for 'getUnmeth'
danes,RGChannelSet: no visible global function definition for
  'preprocessRaw'
danet,MethyLumiSet: no visible global function definition for
  'methylated'
danet,MethyLumiSet: no visible global function definition for
  'unmethylated'
danet,MethyLumiSet: no visible global function definition for 'betas<-'
danet,MethyLumiSet: no visible global function definition for
  'methylated<-'
danet,MethyLumiSet: no visible global function definition for
  'unmethylated<-'
danet,MethylSet: no visible global function definition for 'getMeth'
danet,MethylSet: no visible global function definition for 'getUnmeth'
danet,RGChannelSet: no visible global function definition for
  'preprocessRaw'
dasen,MethyLumiSet: no visible global function definition for
  'methylated'
dasen,MethyLumiSet: no visible global function definition for
  'unmethylated'
dasen,MethyLumiSet: no visible global function definition for 'betas<-'
dasen,MethyLumiSet: no visible global function definition for
  'methylated<-'
dasen,MethyLumiSet: no visible global function definition for
  'unmethylated<-'
dasen,MethylSet: no visible global function definition for 'getMeth'
dasen,MethylSet: no visible global function definition for 'getUnmeth'
dasen,RGChannelSet: no visible global function definition for
  'preprocessRaw'
daten1,MethyLumiSet: no visible global function definition for
  'methylated'
daten1,MethyLumiSet: no visible global function definition for
  'unmethylated'
daten1,MethyLumiSet: no visible global function definition for
  'betas<-'
daten1,MethyLumiSet: no visible global function definition for
  'methylated<-'
daten1,MethyLumiSet: no visible global function definition for
  'unmethylated<-'
daten1,MethylSet: no visible global function definition for 'getMeth'
daten1,MethylSet: no visible global function definition for 'getUnmeth'
daten1,RGChannelSet: no visible global function definition for
  'preprocessRaw'
daten2,MethyLumiSet: no visible global function definition for
  'methylated'
daten2,MethyLumiSet: no visible global function definition for
  'unmethylated'
daten2,MethyLumiSet: no visible global function definition for
  'betas<-'
daten2,MethyLumiSet: no visible global function definition for
  'methylated<-'
daten2,MethyLumiSet: no visible global function definition for
  'unmethylated<-'
daten2,MethylSet: no visible global function definition for 'getMeth'
daten2,MethylSet: no visible global function definition for 'getUnmeth'
daten2,RGChannelSet: no visible global function definition for
  'preprocessRaw'
dmrse,MethylSet: no visible global function definition for 'getBeta'
dmrse,RGChannelSet: no visible global function definition for 'getBeta'
dmrse_col,MethylSet: no visible global function definition for
  'getBeta'
dmrse_col,RGChannelSet: no visible global function definition for
  'getBeta'
dmrse_row,MethylSet: no visible global function definition for
  'getBeta'
dmrse_row,RGChannelSet: no visible global function definition for
  'getBeta'
fuks,MethyLumiSet: no visible global function definition for 'betas<-'
fuks,MethyLumiSet: no visible global function definition for 'betas'
fuks,MethylSet: no visible global function definition for 'getBeta'
fuks,RGChannelSet: no visible global function definition for
  'preprocessRaw'
fuks,RGChannelSet: no visible global function definition for 'getBeta'
genki,MethyLumiSet: no visible global function definition for 'betas'
genki,MethylSet: no visible global function definition for 'getBeta'
genki,RGChannelSet: no visible global function definition for
  'getSnpBeta'
nanes,MethyLumiSet: no visible global function definition for
  'methylated'
nanes,MethyLumiSet: no visible global function definition for
  'unmethylated'
nanes,MethyLumiSet: no visible global function definition for 'betas<-'
nanes,MethyLumiSet: no visible global function definition for
  'methylated<-'
nanes,MethyLumiSet: no visible global function definition for
  'unmethylated<-'
nanes,MethylSet: no visible global function definition for 'getMeth'
nanes,MethylSet: no visible global function definition for 'getUnmeth'
nanes,RGChannelSet: no visible global function definition for
  'preprocessRaw'
nanet,MethyLumiSet: no visible global function definition for
  'methylated'
nanet,MethyLumiSet: no visible global function definition for
  'unmethylated'
nanet,MethyLumiSet: no visible global function definition for 'betas<-'
nanet,MethyLumiSet: no visible global function definition for
  'methylated<-'
nanet,MethyLumiSet: no visible global function definition for
  'unmethylated<-'
nanet,MethylSet: no visible global function definition for 'getMeth'
nanet,MethylSet: no visible global function definition for 'getUnmeth'
nanet,RGChannelSet: no visible global function definition for
  'preprocessRaw'
nasen,MethyLumiSet: no visible global function definition for
  'methylated'
nasen,MethyLumiSet: no visible global function definition for
  'unmethylated'
nasen,MethyLumiSet: no visible global function definition for 'betas<-'
nasen,MethyLumiSet: no visible global function definition for
  'methylated<-'
nasen,MethyLumiSet: no visible global function definition for
  'unmethylated<-'
nasen,MethylSet: no visible global function definition for 'getMeth'
nasen,MethylSet: no visible global function definition for 'getUnmeth'
nasen,RGChannelSet: no visible global function definition for
  'preprocessRaw'
naten,MethyLumiSet: no visible global function definition for
  'methylated'
naten,MethyLumiSet: no visible global function definition for
  'unmethylated'
naten,MethyLumiSet: no visible global function definition for 'betas<-'
naten,MethyLumiSet: no visible global function definition for
  'methylated<-'
naten,MethyLumiSet: no visible global function definition for
  'unmethylated<-'
naten,MethylSet: no visible global function definition for 'getMeth'
naten,MethylSet: no visible global function definition for 'getUnmeth'
naten,RGChannelSet: no visible global function definition for
  'preprocessRaw'
outlyx,MethyLumiSet: no visible global function definition for 'betas'
outlyx,MethylSet: no visible global function definition for 'getBeta'
outlyx,RGChannelSet: no visible global function definition for
  'getBeta'
pfilter,MethyLumiSet: no visible global function definition for 'betas'
pfilter,MethyLumiSet: no visible global function definition for
  'methylated'
pfilter,MethyLumiSet: no visible global function definition for
  'unmethylated'
pfilter,MethyLumiSet: no visible global function definition for 'pvals'
pfilter,RGChannelSetExtended: no visible binding for global variable
  'RGChannelSetExtended'
pfilter,RGChannelSetExtended: no visible global function definition for
  'preprocessRaw'
pfilter,RGChannelSetExtended: no visible global function definition for
  'detectionP'
pwod,MethyLumiSet: no visible global function definition for 'betas'
pwod,MethyLumiSet: no visible global function definition for 'betas<-'
pwod,MethylSet: no visible global function definition for 'getBeta'
pwod,RGChannelSet: no visible global function definition for 'getBeta'
seabi,MethyLumiSet: no visible global function definition for 'betas'
seabi,MethylSet: no visible global function definition for 'getBeta'
seabi,RGChannelSet: no visible global function definition for 'getBeta'
swan,MethyLumiSet: no visible global function definition for
  'methylated'
swan,MethyLumiSet: no visible global function definition for
  'unmethylated'
swan,MethyLumiSet: no visible global function definition for
  'intensitiesByChannel'
swan,MethyLumiSet: no visible global function definition for 'QCdata'
swan,MethyLumiSet: no visible global function definition for 'getBeta'
swan,MethyLumiSet: no visible global function definition for 'getMeth'
swan,MethyLumiSet: no visible global function definition for
  'getUnmeth'
swan,MethyLumiSet: no visible global function definition for 'betas'
swan,RGChannelSet: no visible global function definition for
  'preprocessSWAN'
tost,MethyLumiSet: no visible global function definition for
  'methylated'
tost,MethyLumiSet: no visible global function definition for 'betas<-'
tost,MethyLumiSet: no visible global function definition for
  'unmethylated'
tost,MethyLumiSet: no visible global function definition for 'pvals'
tost,RGChannelSet: no visible global function definition for
  'detectionP'
tost,RGChannelSet: no visible global function definition for
  'preprocessRaw'
tost,RGChannelSet: no visible global function definition for 'getMeth'
tost,RGChannelSet: no visible global function definition for
  'getUnmeth'
Undefined global functions or variables:
  .mclapply IlluminaHumanMethylation450kanno.ilmn12.hg19 PATH_RES
  QCdata QCdata<- RGChannelSetExtended addAnnotationInfo
  addControlData2methyLumiM as betas betas<- colMedians controlData<-
  data density detectionP epic.controls epic.ordering getBeta
  getControlAddress getGreen getManifestInfo getMeth getProbeInfo
  getRed getSnpBeta getUnmeth hm27.controls hm27.ordering
  hm450.controls hm450.ordering intensitiesByChannel is kmeans lm
  lumiMethyB mad median methylated methylated<- methylumiR n.sd
  na.exclude new normalizeQuantiles pAUC preprocessRaw preprocessSWAN
  probeAnnotationsCategory projectName pval.detect<- pvals qchisq
  quantile read.csv read.table readIDAT rocdemo.sca sd t.test
  unmethylated unmethylated<- warn write.csv write.table
Consider adding
  importFrom("methods", "as", "is", "new")
  importFrom("stats", "density", "kmeans", "lm", "mad", "median",
             "na.exclude", "qchisq", "quantile", "sd", "t.test")
  importFrom("utils", "data", "read.csv", "read.table", "write.csv",
             "write.table")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
        user system elapsed
sextest 9.83   0.08    9.90
seabi   7.03   0.02    7.05
metrics 6.72   0.06    6.79
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
         user system elapsed
sextest 11.71   0.05   11.76
metrics  8.12   0.00    8.12
seabi    8.11   0.01    8.13
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 5 NOTEs
See
  'C:/Users/biocbuild/bbs-3.4-bioc/meat/wateRmelon.Rcheck/00check.log'
for details.


wateRmelon.Rcheck/00install.out:


install for i386

* installing *source* package 'wateRmelon' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function from function 'as.methylumi' in package 'wateRmelon'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'wateRmelon' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'wateRmelon' as wateRmelon_1.18.0.zip
* DONE (wateRmelon)

wateRmelon.Rcheck/examples_i386/wateRmelon-Ex.timings:

nameusersystemelapsed
BMIQ1.890.001.89
agep0.170.030.20
bscon0.170.030.21
combo0.800.000.79
dasen2.450.132.60
dmrse2.470.042.51
genki2.740.082.81
iDMR0.020.000.02
melon0.190.020.20
metrics6.720.066.79
outlyx101
pfilter0.310.020.33
pwod0.390.000.39
qual2.480.152.64
readEPIC000
seabi7.030.027.05
sextest9.830.089.90

wateRmelon.Rcheck/examples_x64/wateRmelon-Ex.timings:

nameusersystemelapsed
BMIQ1.360.021.37
agep0.190.030.22
bscon0.120.030.15
combo0.940.000.94
dasen2.800.112.91
dmrse2.450.082.53
genki3.090.003.09
iDMR0.000.010.02
melon0.180.000.17
metrics8.120.008.12
outlyx0.670.000.68
pfilter0.280.000.28
pwod0.400.020.42
qual3.280.003.28
readEPIC000
seabi8.110.018.13
sextest11.71 0.0511.76