To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("wateRmelon")

In most cases, you don't need to download the package archive at all.

wateRmelon

Illumina 450 methylation array normalization and metrics

Bioconductor version: Release (3.4)

15 flavours of betas and three performance metrics, with methods for objects produced by methylumi and minfi packages.

Author: Leonard C Schalkwyk, Ruth Pidsley, Chloe CY Wong, with functions contributed by Nizar Touleimat, Matthieu Defrance, Andrew Teschendorff, Jovana Maksimovic, Tyler Gorrie-Stone, Louis El Khoury

Maintainer: Leo <lschal at essex.ac.uk>

Citation (from within R, enter citation("wateRmelon")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("wateRmelon")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("wateRmelon")

PDF	R Script	The \Rpackage{wateRmelon} Package
PDF		Reference Manual
Text		NEWS

Details

biocViews	DNAMethylation, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version	1.18.0
In Bioconductor since	BioC 2.12 (R-3.0) (4 years)
License	GPL-3
Depends	R (>= 2.10), Biobase, limma, methods, matrixStats, methylumi, lumi, ROC, IlluminaHumanMethylation450kanno.ilmn12.hg19, illuminaio
Imports	Biobase
LinkingTo
Suggests	RPMM
SystemRequirements
Enhances	minfi
URL
Depends On Me	bigmelon, skewr
Imports Me	ChAMP, ENmix
Suggests Me	RnBeads
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	wateRmelon_1.18.0.tar.gz
Windows Binary	wateRmelon_1.18.0.zip
Mac OS X 10.9 (Mavericks)	wateRmelon_1.18.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/wateRmelon/tree/release-3.4
Package Short Url	http://bioconductor.org/packages/wateRmelon/
Package Downloads Report	Download Stats

Documentation »

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