Sean K Maden
| Snapshot Date: 2024-07-04 14:00 -0400 (Thu, 04 Jul 2024) |
| git_url: https://git.bioconductor.org/packages/recountmethylation |
| git_branch: devel |
| git_last_commit: c029431 |
| git_last_commit_date: 2024-04-30 11:26:41 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-07-05 11:44 -0400 (Fri, 05 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4593 |
| palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4414 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4399 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4391 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 3688 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1675/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| recountmethylation 1.15.0 (landing page) Sean K Maden
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
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To the developers/maintainers of the recountmethylation package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/recountmethylation.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: recountmethylation |
| Version: 1.15.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data recountmethylation |
| StartedAt: 2024-07-05 00:50:42 -0000 (Fri, 05 Jul 2024) |
| EndedAt: 2024-07-05 00:51:57 -0000 (Fri, 05 Jul 2024) |
| EllapsedTime: 75.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data recountmethylation ### ############################################################################## ############################################################################## * checking for file ‘recountmethylation/DESCRIPTION’ ... OK * preparing ‘recountmethylation’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘cpg_probe_annotations.Rmd’ using rmarkdown Quitting from lines 28-31 [setup] (cpg_probe_annotations.Rmd) Error: processing vignette 'cpg_probe_annotations.Rmd' failed with diagnostics: there is no package called 'minfiDataEPIC' --- failed re-building ‘cpg_probe_annotations.Rmd’ --- re-building ‘exporting_saving_data.Rmd’ using rmarkdown --- finished re-building ‘exporting_saving_data.Rmd’ --- re-building ‘recountmethylation_data_analyses.Rmd’ using rmarkdown --- finished re-building ‘recountmethylation_data_analyses.Rmd’ --- re-building ‘recountmethylation_glint.Rmd’ using rmarkdown --- finished re-building ‘recountmethylation_glint.Rmd’ --- re-building ‘recountmethylation_pwrewas.Rmd’ using rmarkdown --- finished re-building ‘recountmethylation_pwrewas.Rmd’ --- re-building ‘recountmethylation_search_index.Rmd’ using rmarkdown --- finished re-building ‘recountmethylation_search_index.Rmd’ --- re-building ‘recountmethylation_users_guide.Rmd’ using rmarkdown --- finished re-building ‘recountmethylation_users_guide.Rmd’ SUMMARY: processing the following file failed: ‘cpg_probe_annotations.Rmd’ Error: Vignette re-building failed. Execution halted