| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-07-26 11:40 -0400 (Fri, 26 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4690 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4384 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4457 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4406 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1454/2248 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| orthos 1.3.0 (landing page) Panagiotis Papasaikas
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the orthos package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/orthos.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: orthos |
| Version: 1.3.0 |
| Command: chmod a+r orthos -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data orthos |
| StartedAt: 2024-07-25 20:09:34 -0400 (Thu, 25 Jul 2024) |
| EndedAt: 2024-07-25 20:12:58 -0400 (Thu, 25 Jul 2024) |
| EllapsedTime: 203.9 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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###
### Running command:
###
### chmod a+r orthos -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data orthos
###
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* checking for file 'orthos/DESCRIPTION' ... OK
* preparing 'orthos':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'orthosIntro.Rmd' using rmarkdown
Channels:
- conda-forge
Platform: win-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: C:\Users\biocbuild\.basilisk\1.17.1\orthos\1.3.0\orthos
added / updated specs:
- python=3.8.13
The following packages will be downloaded:
package | build
---------------------------|-----------------
python-3.8.13 |hcf16a7b_0_cpython 16.9 MB conda-forge
------------------------------------------------------------
Total: 16.9 MB
The following NEW packages will be INSTALLED:
bzip2 conda-forge/win-64::bzip2-1.0.8-h2466b09_7
ca-certificates conda-forge/win-64::ca-certificates-2024.7.4-h56e8100_0
libffi conda-forge/win-64::libffi-3.4.2-h8ffe710_5
libsqlite conda-forge/win-64::libsqlite-3.46.0-h2466b09_0
libzlib conda-forge/win-64::libzlib-1.3.1-h2466b09_1
openssl conda-forge/win-64::openssl-3.3.1-h2466b09_2
pip conda-forge/noarch::pip-24.0-pyhd8ed1ab_0
python conda-forge/win-64::python-3.8.13-hcf16a7b_0_cpython
setuptools conda-forge/noarch::setuptools-71.0.4-pyhd8ed1ab_0
sqlite conda-forge/win-64::sqlite-3.46.0-h2466b09_0
tk conda-forge/win-64::tk-8.6.13-h5226925_1
ucrt conda-forge/win-64::ucrt-10.0.22621.0-h57928b3_0
vc conda-forge/win-64::vc-14.3-h8a93ad2_20
vc14_runtime conda-forge/win-64::vc14_runtime-14.40.33810-ha82c5b3_20
vs2015_runtime conda-forge/win-64::vs2015_runtime-14.40.33810-h3bf8584_20
wheel conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1
xz conda-forge/win-64::xz-5.2.6-h8d14728_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: win-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.5.0
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: win-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working...
Quitting from lines 281-285 [unnamed-chunk-4] (orthosIntro.Rmd)
Error: processing vignette 'orthosIntro.Rmd' failed with diagnostics:
one or more Python packages failed to install [error code 5]
--- failed re-building 'orthosIntro.Rmd'
SUMMARY: processing the following file failed:
'orthosIntro.Rmd'
Error: Vignette re-building failed.
Execution halted