Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-07-05 11:44 -0400 (Fri, 05 Jul 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4593 |
palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4414 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4399 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4391 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 3688 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 854/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
glmGamPoi 1.17.3 (landing page) Constantin Ahlmann-Eltze
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
palomino6 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
To the developers/maintainers of the glmGamPoi package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/glmGamPoi.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: glmGamPoi |
Version: 1.17.3 |
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data glmGamPoi |
StartedAt: 2024-07-04 23:29:51 -0000 (Thu, 04 Jul 2024) |
EndedAt: 2024-07-04 23:33:55 -0000 (Thu, 04 Jul 2024) |
EllapsedTime: 243.4 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data glmGamPoi ### ############################################################################## ############################################################################## * checking for file ‘glmGamPoi/DESCRIPTION’ ... OK * preparing ‘glmGamPoi’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘glmGamPoi.Rmd’ using rmarkdown Quitting from lines 83-91 [unnamed-chunk-5] (glmGamPoi.Rmd) Error: processing vignette 'glmGamPoi.Rmd' failed with diagnostics: there is no package called 'TENxPBMCData' --- failed re-building ‘glmGamPoi.Rmd’ --- re-building ‘pseudobulk.Rmd’ using rmarkdown warning: solve(): system is singular (rcond: 1.2913e-16); attempting approx solution warning: solve(): system is singular (rcond: 1.39451e-16); attempting approx solution warning: solve(): system is singular (rcond: 1.38371e-16); attempting approx solution warning: solve(): system is singular (rcond: 1.73922e-16); attempting approx solution warning: solve(): system is singular (rcond: 1.98612e-16); attempting approx solution warning: solve(): system is singular (rcond: 2.93149e-17); attempting approx solution warning: solve(): system is singular (rcond: 3.08817e-17); attempting approx solution warning: solve(): system is singular (rcond: 3.14489e-17); attempting approx solution warning: solve(): system is singular (rcond: 3.16525e-17); attempting approx solution warning: solve(): system is singular (rcond: 3.17246e-17); attempting approx solution warning: solve(): system is singular (rcond: 3.17487e-17); attempting approx solution warning: solve(): system is singular (rcond: 3.17574e-17); attempting approx solution warning: solve(): system is singular (rcond: 3.17608e-17); attempting approx solution warning: solve(): system is singular (rcond: 3.17623e-17); attempting approx solution warning: solve(): system is singular (rcond: 3.1763e-17); attempting approx solution warning: solve(): system is singular (rcond: 3.17974e-17); attempting approx solution --- finished re-building ‘pseudobulk.Rmd’ SUMMARY: processing the following file failed: ‘glmGamPoi.Rmd’ Error: Vignette re-building failed. Execution halted