Back to Long Tests report for BioC 3.19

This page was generated on 2024-05-18 23:55:02 -0400 (Sat, 18 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4751
palomino3Windows Server 2022 Datacenterx644.4.0 (2024-04-24 ucrt) -- "Puppy Cup" 4485
lconwaymacOS 12.7.1 Montereyx86_644.4.0 (2024-04-24) -- "Puppy Cup" 4515
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 11/33HostnameOS / ArchCHECK
biodbNcbi 1.8.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-05-18 09:55:01 -0400 (Sat, 18 May 2024)
git_url: https://git.bioconductor.org/packages/biodbNcbi
git_branch: RELEASE_3_19
git_last_commit: 1365c98
git_last_commit_date: 2024-04-30 11:41:09 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  ERROR  
palomino3Windows Server 2022 Datacenter / x64  WARNINGS  
lconwaymacOS 12.7.1 Monterey / x86_64  WARNINGS  

CHECK results for biodbNcbi on lconway


To the developers/maintainers of the biodbNcbi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbNcbi
Version: 1.8.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.8.0.tar.gz
StartedAt: 2024-05-18 16:00:51 -0400 (Sat, 18 May 2024)
EndedAt: 2024-05-18 16:02:53 -0400 (Sat, 18 May 2024)
EllapsedTime: 121.6 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbNcbi.Rcheck
Warnings: 1

Tests output

biodbNcbi.Rcheck/tests/testthat.Rout


R version 4.4.0 (2024-04-24) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbNci)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbNcbi")
Loading required package: biodbNcbi
biodb.INFO [2024-05-18 16:01:37.512][biodb::testContext]
biodb.INFO [2024-05-18 16:01:37.515][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-18 16:01:37.516][biodb::testContext] Test context - CCDS long tests
biodb.INFO [2024-05-18 16:01:37.517][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-18 16:01:37.518][biodb::testContext]
biodb.INFO [2024-05-18 16:01:37.523][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-05-18 16:01:37.525][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-05-18 16:01:37.531][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-18 16:01:37.532][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-18 16:01:37.533][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-18 16:01:37.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.536][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-18 16:01:37.549][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-18 16:01:37.550][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.552][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-18 16:01:37.553][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-18 16:01:37.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.556][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-18 16:01:37.557][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-18 16:01:37.557][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-18 16:01:37.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.560][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-18 16:01:37.561][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-18 16:01:37.562][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-18 16:01:37.562][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.564][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-18 16:01:37.565][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-18 16:01:37.566][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.568][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-18 16:01:37.569][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-18 16:01:37.570][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-18 16:01:37.570][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.573][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-18 16:01:37.573][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-18 16:01:37.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.576][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-18 16:01:37.577][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-18 16:01:37.578][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-18 16:01:37.579][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.581][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-18 16:01:37.582][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-18 16:01:37.582][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-18 16:01:37.583][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-18 16:01:37.584][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-18 16:01:37.585][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-18 16:01:37.586][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.588][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-18 16:01:37.589][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-18 16:01:37.589][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.592][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-18 16:01:37.592][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-18 16:01:37.593][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.595][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-18 16:01:37.596][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-18 16:01:37.597][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.599][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-18 16:01:37.600][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-18 16:01:37.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.603][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-18 16:01:37.604][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-18 16:01:37.604][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.606][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-18 16:01:37.607][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-18 16:01:37.628][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-18 16:01:37.629][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.631][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-18 16:01:37.632][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-18 16:01:37.633][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-18 16:01:37.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.638][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-18 16:01:37.668][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:37.680][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-18 16:01:37.681][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:37.682][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:01:37.682][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:37.683][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:01:37.684][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:37.685][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:01:37.686][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-18 16:01:37.687][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:01:37.687][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:37.688][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-18 16:01:37.689][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:01:37.690][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:37.691][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:37.691][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:01:37.691][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-18 16:01:37.691][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-18 16:01:37.691][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-18 16:01:37.691][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-18 16:01:37.692][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:01:37.693][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:37.694][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:37.695][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:01:37.695][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:37.696][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:37.697][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:01:37.698][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:37.698][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:01:37.699][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:01:37.700][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:37.701][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:37.702][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-18 16:01:37.703][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:37.704][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-18 16:01:37.705][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:37.706][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:01:37.706][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:37.707][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:01:37.708][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:37.709][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:01:37.710][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-18 16:01:37.710][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:01:37.711][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:37.712][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-18 16:01:37.713][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:01:37.713][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:37.714][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:37.715][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:01:37.715][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-18 16:01:37.715][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-18 16:01:37.715][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-18 16:01:37.715][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-18 16:01:37.716][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:01:37.717][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:37.717][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:37.718][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:01:37.719][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:37.720][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:37.720][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:01:37.721][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:37.722][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:01:37.723][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:01:37.723][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:37.724][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:37.725][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-18 16:01:37.726][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:37.727][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-18 16:01:37.728][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:37.729][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:01:37.730][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:37.730][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:01:37.731][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:37.732][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:01:37.733][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-18 16:01:37.733][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:01:37.734][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:37.735][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-18 16:01:37.736][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:01:37.737][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:37.737][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:37.738][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:37.739][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:01:37.740][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:37.740][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:37.741][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:01:37.742][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:37.743][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:37.744][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:01:37.744][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:37.745][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:01:37.746][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:01:37.747][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:37.747][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:37.748][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-18 16:01:37.750][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:37.750][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-18 16:01:37.751][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:37.752][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:01:37.753][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:37.753][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:01:37.754][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:37.755][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:01:37.756][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-18 16:01:37.756][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:01:37.757][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:37.758][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-18 16:01:37.759][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:01:37.760][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:37.761][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:37.762][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:37.762][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:01:37.763][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:37.764][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:37.764][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:01:37.765][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:37.766][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:37.767][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:01:37.768][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:37.769][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:01:37.769][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:01:37.770][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:37.771][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:37.774][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-18 16:01:37.775][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.776][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.780][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.787][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.791][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.802][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.813][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.816][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.819][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.823][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.833][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.836][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.840][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-18 16:01:37.843][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-18 16:01:37.844][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-18 16:01:37.845][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-18 16:01:37.846][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-18 16:01:37.847][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-18 16:01:37.848][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-18 16:01:37.850][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-18 16:01:37.851][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-18 16:01:37.852][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-18 16:01:37.853][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-18 16:01:37.854][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-18 16:01:37.855][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-18 16:01:37.856][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-18 16:01:37.857][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-18 16:01:37.858][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-18 16:01:37.859][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-18 16:01:37.860][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-18 16:01:37.861][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-18 16:01:37.862][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-18 16:01:37.863][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-18 16:01:37.864][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-18 16:01:37.865][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-18 16:01:37.866][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-18 16:01:37.867][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-18 16:01:37.868][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-18 16:01:37.869][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-18 16:01:37.870][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-18 16:01:37.871][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-18 16:01:37.872][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-18 16:01:37.873][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-18 16:01:37.874][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-18 16:01:37.875][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-18 16:01:37.876][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-18 16:01:37.877][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-18 16:01:37.878][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-18 16:01:37.879][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-18 16:01:37.880][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-18 16:01:37.881][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-18 16:01:37.882][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-18 16:01:37.884][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-18 16:01:37.885][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-18 16:01:37.886][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-18 16:01:37.887][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-18 16:01:37.888][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-18 16:01:37.889][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-18 16:01:37.890][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-18 16:01:37.891][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-18 16:01:37.892][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-18 16:01:37.893][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-18 16:01:37.894][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-18 16:01:37.895][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-18 16:01:37.896][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-18 16:01:37.897][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-18 16:01:37.899][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-18 16:01:37.900][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-18 16:01:37.901][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-18 16:01:37.902][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-18 16:01:37.903][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-18 16:01:37.904][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-18 16:01:37.905][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-18 16:01:37.906][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-18 16:01:37.907][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-18 16:01:37.908][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-18 16:01:37.909][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-18 16:01:37.910][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-18 16:01:37.911][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-18 16:01:37.912][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-18 16:01:37.913][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-18 16:01:37.914][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-18 16:01:37.915][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-18 16:01:37.917][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-18 16:01:37.918][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-18 16:01:37.919][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-18 16:01:37.920][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-18 16:01:37.921][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-18 16:01:37.922][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-18 16:01:37.923][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-18 16:01:37.924][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-18 16:01:37.925][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-18 16:01:37.927][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-18 16:01:37.928][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-18 16:01:37.929][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-18 16:01:37.933][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-18 16:01:37.935][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-05-18 16:01:37.937][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-18 16:01:37.938][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.939][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:37.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:37.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.954][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:37.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:37.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.958][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:37.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:37.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.963][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:37.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:37.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:37.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:37.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.973][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:37.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:37.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.978][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:37.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:37.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:37.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:37.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.987][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:37.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:37.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:37.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:37.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:37.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:37.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:37.997][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:37.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:37.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:37.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:37.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:38.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:38.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:38.001][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:38.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:38.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:38.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:38.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:38.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:38.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:38.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:38.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:38.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:38.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:38.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:38.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:38.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:38.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:38.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:38.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:38.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:38.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:38.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:38.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:38.015][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:38.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:38.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:38.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:38.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:38.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:38.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:38.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:38.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:38.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:38.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:38.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:38.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:38.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:38.024][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:38.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:38.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:38.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:38.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:38.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:38.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:38.030][bdb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-05-18 16:01:38.038][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-05-18 16:01:38.039][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:38.040][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-05-18 16:01:38.041][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:38.042][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:01:38.043][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:38.043][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:01:38.044][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:38.045][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:01:38.046][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-05-18 16:01:38.047][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:01:38.047][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:38.048][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-05-18 16:01:38.049][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:01:38.050][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-05-18 16:01:38.050][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-05-18 16:01:38.051][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:38.052][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:38.052][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-18 16:01:38.053][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:38.054][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:38.054][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:01:38.055][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:38.056][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:38.057][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:01:38.057][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-18 16:01:38.057][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-05-18 16:01:38.058][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:01:38.059][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:01:38.060][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:38.060][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:38.061][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-05-18 16:01:38.063][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:38.064][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-05-18 16:01:38.065][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:38.065][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:01:38.066][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:38.067][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:01:38.068][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:38.068][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:01:38.069][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-18 16:01:38.070][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:01:38.071][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:38.072][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-05-18 16:01:38.073][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:01:38.073][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-05-18 16:01:38.073][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-05-18 16:01:38.073][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-05-18 16:01:38.073][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-05-18 16:01:38.073][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-05-18 16:01:38.073][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-05-18 16:01:38.074][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:38.075][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:01:38.076][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-18 16:01:38.077][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:38.077][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:38.078][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:01:38.079][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:38.080][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:38.081][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:01:38.081][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:01:38.081][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-18 16:01:38.082][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:01:38.083][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:01:38.084][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:38.085][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:38.086][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-05-18 16:01:38.110][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:38.110][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-05-18 16:01:38.111][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:38.112][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:01:38.113][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:38.113][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:01:38.114][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:38.115][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:01:38.116][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-18 16:01:38.116][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:01:38.117][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:38.118][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-05-18 16:01:38.119][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:01:38.120][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-05-18 16:01:38.120][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:01:38.120][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:01:38.120][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:01:38.120][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:01:38.120][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:01:38.120][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:01:38.120][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:01:38.120][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:01:38.120][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:01:38.120][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-05-18 16:01:38.120][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:01:38.120][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:01:38.120][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:01:38.121][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:38.121][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:01:38.121][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-18 16:01:38.121][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-18 16:01:38.122][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-05-18 16:01:38.123][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:38.124][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:38.124][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:01:38.125][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:38.126][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:38.127][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:01:38.127][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:01:38.127][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-18 16:01:38.127][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-05-18 16:01:38.128][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:01:38.129][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:01:38.130][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:38.130][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-18 16:01:38.132][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-05-18 16:01:38.133][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:38.134][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-05-18 16:01:38.135][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:38.135][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:01:38.136][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:38.137][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:01:38.138][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:38.138][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:01:38.139][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-18 16:01:38.140][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:01:38.141][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:38.142][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-05-18 16:01:38.142][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:01:38.143][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-05-18 16:01:38.143][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-05-18 16:01:38.144][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:38.145][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:38.146][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-05-18 16:01:38.146][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:38.147][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:38.148][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:01:38.148][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:38.149][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:38.150][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:01:38.151][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:01:38.151][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-18 16:01:38.151][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-05-18 16:01:38.152][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:01:38.152][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:01:38.153][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:38.154][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-18 16:01:38.158][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-05-18 16:01:38.159][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-18 16:01:38.161][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-18 16:01:38.162][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-05-18 16:01:38.163][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-18 16:01:38.164][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-05-18 16:01:38.182][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-05-18 16:01:38.183][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-05-18 16:01:38.186][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-05-18 16:01:38.189][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-05-18 16:01:38.192][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:01:38.193][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:01:38.194][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-05-18 16:01:38.195][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:01:38.196][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:01:38.197][bdb$getFactory()$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.INFO [2024-05-18 16:01:38.205][biodb::testThat]
biodb.INFO [2024-05-18 16:01:38.206][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-05-18 16:01:38.206][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:01:38.207][biodb::testThat]
biodb.TRACE[2024-05-18 16:01:38.210][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS12227.1-content.html".
biodb.DEBUG[2024-05-18 16:01:38.212][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:01:38.215][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-05-18 16:01:38.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:01:38.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:38.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:38.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:38.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:38.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:38.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:01:38.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.265][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:38.274][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.284][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.304][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:38.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:01:38.364][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS12227.1.
biodb.TRACE[2024-05-18 16:01:38.366][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.369][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.393][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:01:38.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:01:38.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.396][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:01:38.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:01:38.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.399][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:01:38.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:01:38.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.402][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:01:38.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:01:38.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.430][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.461][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.464][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.483][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.484][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.485][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.496][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:38.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.499][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.507][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.511][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:38.511][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.513][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.514][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:38.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.523][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.524][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.526][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.530][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.531][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.532][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.546][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS43240.1-content.html".
biodb.DEBUG[2024-05-18 16:01:38.572][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:01:38.574][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-05-18 16:01:38.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:01:38.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:38.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:38.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:38.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:38.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:38.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:01:38.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.609][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:38.610][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.615][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.617][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:38.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:01:38.651][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-05-18 16:01:38.666][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.669][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.671][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:01:38.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:01:38.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.675][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:01:38.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:01:38.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.678][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:01:38.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:01:38.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.681][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:01:38.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:01:38.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.725][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.755][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.756][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.757][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.768][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:38.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.771][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.774][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.777][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:38.778][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.780][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.780][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:38.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.790][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.791][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.792][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.797][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.797][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.799][ef$get] fields variable is a list.
biodb.INFO [2024-05-18 16:01:38.806][biodb::testThat]
biodb.INFO [2024-05-18 16:01:38.806][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-05-18 16:01:38.807][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:01:38.808][biodb::testThat]
biodb.DEBUG[2024-05-18 16:01:38.810][private$loadEntries] Creating entries from ids [2]: "CCDS12227.1, CCDS43240.1".
biodb.DEBUG[2024-05-18 16:01:38.815][conn$getEntryContent] Get NCBI CCDS entry content(s) for 2 id(s)...
biodb.TRACE[2024-05-18 16:01:38.818][cch$loadFileContent] Trying to load 2 files from cache: [2]: "CCDS12227.1, CCDS43240.1".
biodb.TRACE[2024-05-18 16:01:38.819][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-05-18 16:01:38.822][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS12227.1.html, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2024-05-18 16:01:38.823][conn$getEntryContent] 2 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:01:38.823][self$createEntryFromContent] Creating NCBI CCDS entries from 2 content(s).
biodb.DEBUG[2024-05-18 16:01:38.824][self$createEntryFromContent] Parsing 2 NCBI CCDS entries.
biodb.DEBUG[2024-05-18 16:01:38.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:01:38.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:38.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:38.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:38.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:38.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:38.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:01:38.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.852][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:38.853][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.854][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.856][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:38.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.866][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.872][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:01:38.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:01:38.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:38.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:38.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:38.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:38.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:38.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:01:38.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.906][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:38.906][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.908][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.909][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:38.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:38.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.912][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.915][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:38.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:38.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:38.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:01:38.954][self$createEntryFromContent] Accession numbers: CCDS12227.1, CCDS43240.1.
biodb.TRACE[2024-05-18 16:01:38.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-18 16:01:38.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-18 16:01:38.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:01:38.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:01:38.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:01:38.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:01:38.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-18 16:01:38.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-18 16:01:38.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:01:38.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:01:38.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:38.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:01:38.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:01:38.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:38.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-18 16:01:38.990][biodb::testThat]
biodb.INFO [2024-05-18 16:01:38.991][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-05-18 16:01:38.991][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:01:38.992][biodb::testThat]
biodb.INFO [2024-05-18 16:01:38.997][biodb::testThat]
biodb.INFO [2024-05-18 16:01:38.998][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-05-18 16:01:38.999][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:01:39.000][biodb::testThat]
biodb.WARN [2024-05-18 16:01:39.015][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-05-18 16:01:39.031][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-05-18 16:01:39.039][biodb::testThat]
biodb.INFO [2024-05-18 16:01:39.039][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-05-18 16:01:39.040][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:01:39.041][biodb::testThat]
biodb.TRACE[2024-05-18 16:01:39.060][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:39.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:39.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:39.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:39.063][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:39.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:39.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:39.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:39.066][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:01:39.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:01:39.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:39.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:39.069][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:01:39.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:01:39.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:39.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:39.072][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:01:39.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:01:39.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:39.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:39.075][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:01:39.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:01:39.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:39.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:39.085][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:39.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:39.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:39.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:39.093][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:39.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:39.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:39.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:39.096][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:01:39.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:01:39.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:39.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:39.099][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:01:39.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:01:39.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:39.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:39.102][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:01:39.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:01:39.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:39.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:39.105][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:01:39.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:01:39.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:39.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-18 16:01:39.113][biodb::testThat]
biodb.INFO [2024-05-18 16:01:39.113][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-05-18 16:01:39.114][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:01:39.115][biodb::testThat]
biodb.INFO [2024-05-18 16:01:39.123][biodb::testThat]
biodb.INFO [2024-05-18 16:01:39.124][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-05-18 16:01:39.124][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:01:39.125][biodb::testThat]
biodb.INFO [2024-05-18 16:01:39.132][biodb::testThat]
biodb.INFO [2024-05-18 16:01:39.133][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-05-18 16:01:39.133][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:01:39.134][biodb::testThat]
biodb.DEBUG[2024-05-18 16:01:39.138][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2024-05-18 16:01:40.776][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1.
biodb.INFO [2024-05-18 16:01:42.206][biodb::testThat]
biodb.INFO [2024-05-18 16:01:42.207][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-05-18 16:01:42.208][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:01:42.209][biodb::testThat]
biodb.INFO [2024-05-18 16:01:42.214][bdb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-18 16:01:42.215][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-05-18 16:01:42.216][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-05-18 16:01:42.217][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-18 16:01:42.218][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:42.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:42.219][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.220][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-05-18 16:01:42.229][biodb::testContext]
biodb.INFO [2024-05-18 16:01:42.230][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-18 16:01:42.231][biodb::testContext] Test context - Gene long tests
biodb.INFO [2024-05-18 16:01:42.232][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-18 16:01:42.232][biodb::testContext]
biodb.INFO [2024-05-18 16:01:42.234][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-05-18 16:01:42.236][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-05-18 16:01:42.239][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-18 16:01:42.239][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-18 16:01:42.240][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-18 16:01:42.241][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.243][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-18 16:01:42.244][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-18 16:01:42.245][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.248][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-18 16:01:42.249][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-18 16:01:42.249][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.251][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-18 16:01:42.252][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-18 16:01:42.253][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-18 16:01:42.254][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.256][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-18 16:01:42.257][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-18 16:01:42.258][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-18 16:01:42.259][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.261][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-18 16:01:42.262][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-18 16:01:42.262][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.265][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-18 16:01:42.265][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-18 16:01:42.266][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-18 16:01:42.267][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.269][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-18 16:01:42.277][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-18 16:01:42.278][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.280][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-18 16:01:42.281][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-18 16:01:42.281][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-18 16:01:42.282][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.284][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-18 16:01:42.285][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-18 16:01:42.286][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-18 16:01:42.287][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-18 16:01:42.287][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-18 16:01:42.288][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-18 16:01:42.289][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.291][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-18 16:01:42.292][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-18 16:01:42.292][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.295][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-18 16:01:42.295][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-18 16:01:42.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.298][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-18 16:01:42.299][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-18 16:01:42.300][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.302][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-18 16:01:42.303][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-18 16:01:42.304][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.306][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-18 16:01:42.307][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-18 16:01:42.307][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.310][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-18 16:01:42.311][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-18 16:01:42.327][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-18 16:01:42.328][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.331][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-18 16:01:42.332][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-18 16:01:42.333][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-18 16:01:42.333][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.336][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-18 16:01:42.337][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:42.338][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-18 16:01:42.339][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.340][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:01:42.340][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.341][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:01:42.342][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:42.343][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:01:42.344][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-18 16:01:42.344][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:01:42.345][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.346][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-18 16:01:42.347][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:01:42.347][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:42.348][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.349][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:01:42.349][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-18 16:01:42.349][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-18 16:01:42.349][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-18 16:01:42.349][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-18 16:01:42.350][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:01:42.351][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:42.351][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:42.352][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:01:42.353][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:42.353][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:42.354][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:01:42.355][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:42.356][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:01:42.356][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:01:42.357][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:42.358][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:42.359][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-18 16:01:42.360][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:42.361][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-18 16:01:42.362][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.362][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:01:42.363][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.364][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:01:42.365][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:42.365][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:01:42.366][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-18 16:01:42.367][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:01:42.368][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.369][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-18 16:01:42.370][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:01:42.370][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:42.371][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.372][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:01:42.372][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-18 16:01:42.372][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-18 16:01:42.372][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-18 16:01:42.372][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-18 16:01:42.373][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:01:42.373][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:42.374][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:42.375][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:01:42.375][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:42.376][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:42.377][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:01:42.378][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:42.379][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:01:42.383][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:01:42.384][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:42.385][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:42.386][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-18 16:01:42.387][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.388][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-18 16:01:42.388][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.389][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:01:42.390][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.390][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:01:42.391][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:42.392][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:01:42.392][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-18 16:01:42.393][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:01:42.394][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:42.395][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-18 16:01:42.396][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:01:42.396][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:42.397][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.398][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:42.399][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:01:42.399][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:42.400][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:42.401][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:01:42.401][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:42.402][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:42.403][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:01:42.404][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:42.404][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:01:42.405][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:01:42.406][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:42.407][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:42.407][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-18 16:01:42.409][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.410][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-18 16:01:42.411][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.411][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:01:42.412][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.413][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:01:42.414][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:42.414][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:01:42.415][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-18 16:01:42.416][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:01:42.417][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:42.417][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-18 16:01:42.418][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:01:42.419][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:42.419][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.420][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:42.421][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:01:42.422][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:42.423][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:42.423][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:01:42.424][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:42.425][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:42.426][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:01:42.426][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:42.427][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:01:42.428][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:01:42.429][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:42.429][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:42.430][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-18 16:01:42.431][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.433][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.436][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.440][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.447][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.454][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.462][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.465][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.473][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.477][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.480][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.484][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.487][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.495][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.498][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-18 16:01:42.499][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-18 16:01:42.501][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-18 16:01:42.502][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-18 16:01:42.503][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-18 16:01:42.504][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-18 16:01:42.505][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-18 16:01:42.506][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-18 16:01:42.507][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-18 16:01:42.508][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-18 16:01:42.509][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-18 16:01:42.511][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-18 16:01:42.512][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-18 16:01:42.513][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-18 16:01:42.514][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-18 16:01:42.515][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-18 16:01:42.516][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-18 16:01:42.517][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-18 16:01:42.518][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-18 16:01:42.519][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-18 16:01:42.521][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-18 16:01:42.522][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-18 16:01:42.523][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-18 16:01:42.524][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-18 16:01:42.525][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-18 16:01:42.526][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-18 16:01:42.527][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-18 16:01:42.528][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-18 16:01:42.529][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-18 16:01:42.530][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-18 16:01:42.531][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-18 16:01:42.532][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-18 16:01:42.534][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-18 16:01:42.535][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-18 16:01:42.536][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-18 16:01:42.537][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-18 16:01:42.538][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-18 16:01:42.539][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-18 16:01:42.540][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-18 16:01:42.541][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-18 16:01:42.542][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-18 16:01:42.543][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-18 16:01:42.544][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-18 16:01:42.546][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-18 16:01:42.547][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-18 16:01:42.548][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-18 16:01:42.549][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-18 16:01:42.550][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-18 16:01:42.551][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-18 16:01:42.552][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-18 16:01:42.553][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-18 16:01:42.554][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-18 16:01:42.560][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-18 16:01:42.561][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-18 16:01:42.562][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-18 16:01:42.563][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-18 16:01:42.564][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-18 16:01:42.565][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-18 16:01:42.566][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-18 16:01:42.568][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-18 16:01:42.569][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-18 16:01:42.570][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-18 16:01:42.571][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-18 16:01:42.572][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-18 16:01:42.573][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-18 16:01:42.574][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-18 16:01:42.575][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-18 16:01:42.576][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-18 16:01:42.577][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-18 16:01:42.578][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-18 16:01:42.579][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-18 16:01:42.580][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-18 16:01:42.581][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-18 16:01:42.582][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-18 16:01:42.583][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-18 16:01:42.584][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-18 16:01:42.585][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-18 16:01:42.586][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-18 16:01:42.587][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-18 16:01:42.588][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-18 16:01:42.589][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-18 16:01:42.590][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-18 16:01:42.591][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-18 16:01:42.592][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-18 16:01:42.594][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-05-18 16:01:42.595][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-18 16:01:42.595][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.597][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:42.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:42.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:42.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:42.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.609][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:42.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:42.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.614][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:42.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:42.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:42.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:42.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.624][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:42.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:42.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.629][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:42.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:42.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:42.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:42.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:42.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:42.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.649][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:42.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:42.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:42.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:42.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.659][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:42.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:42.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:42.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:42.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:42.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:42.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:42.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:42.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.679][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:42.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:42.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:01:42.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:42.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:42.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:42.690][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-05-18 16:01:42.691][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-05-18 16:01:42.693][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.694][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-05-18 16:01:42.694][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.695][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:01:42.696][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.697][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:01:42.698][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.698][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:01:42.699][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-05-18 16:01:42.700][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:01:42.701][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.701][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-05-18 16:01:42.702][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:01:42.703][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-05-18 16:01:42.703][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-05-18 16:01:42.704][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:42.705][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:42.705][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-18 16:01:42.706][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:42.707][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:42.708][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:01:42.709][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:42.709][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:42.710][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:01:42.711][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-18 16:01:42.711][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-05-18 16:01:42.712][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:01:42.712][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:01:42.713][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.714][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:42.715][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-05-18 16:01:42.716][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.717][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-05-18 16:01:42.718][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.719][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:01:42.720][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.720][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:01:42.721][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.722][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:01:42.723][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-18 16:01:42.724][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:01:42.724][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.725][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-05-18 16:01:42.726][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:01:42.727][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-05-18 16:01:42.727][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-05-18 16:01:42.727][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-05-18 16:01:42.727][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-05-18 16:01:42.727][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-05-18 16:01:42.727][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-05-18 16:01:42.728][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:42.728][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:01:42.729][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-18 16:01:42.730][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:42.731][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:42.731][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:01:42.732][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:42.733][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:42.738][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:01:42.739][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:01:42.739][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-18 16:01:42.740][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:01:42.740][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:01:42.741][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.742][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:42.743][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-05-18 16:01:42.744][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:42.745][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-05-18 16:01:42.746][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.746][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:01:42.747][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.748][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:01:42.749][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.750][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:01:42.750][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-18 16:01:42.751][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:01:42.752][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.753][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-05-18 16:01:42.754][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:01:42.754][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-05-18 16:01:42.754][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:01:42.754][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:01:42.754][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:01:42.754][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:01:42.754][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:01:42.754][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:01:42.754][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:01:42.754][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:01:42.754][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:01:42.754][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-05-18 16:01:42.754][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:01:42.754][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:01:42.754][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:01:42.755][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:42.756][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:01:42.756][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-18 16:01:42.756][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-18 16:01:42.757][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-05-18 16:01:42.758][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:42.759][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:42.759][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:01:42.760][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:42.761][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:42.762][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:01:42.763][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:01:42.763][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-18 16:01:42.763][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-05-18 16:01:42.763][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:01:42.764][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:01:42.765][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.766][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-18 16:01:42.767][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-05-18 16:01:42.768][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.769][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-05-18 16:01:42.770][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.771][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:01:42.772][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.772][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:01:42.773][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.774][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:01:42.775][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-18 16:01:42.776][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:01:42.776][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.777][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-05-18 16:01:42.778][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:01:42.779][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-05-18 16:01:42.779][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-05-18 16:01:42.780][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:01:42.781][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:01:42.781][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-05-18 16:01:42.782][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:42.783][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:42.784][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:01:42.784][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:01:42.785][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:01:42.786][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:01:42.787][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:01:42.787][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-18 16:01:42.787][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-05-18 16:01:42.787][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:01:42.788][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:01:42.789][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:01:42.790][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-18 16:01:42.791][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-05-18 16:01:42.792][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-18 16:01:42.793][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-18 16:01:42.794][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-05-18 16:01:42.796][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-18 16:01:42.797][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-05-18 16:01:42.803][super$initialize] Initialize connector ncbi.gene.
biodb.DEBUG[2024-05-18 16:01:42.804][super$initialize] Register connector ncbi.gene with the request scheduler
biodb.DEBUG[2024-05-18 16:01:42.805][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.gene.
biodb.DEBUG[2024-05-18 16:01:42.806][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-05-18 16:01:42.807][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:01:42.808][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:01:42.809][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-05-18 16:01:42.810][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:01:42.811][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:01:42.868][biodb$getFactory()$createConn] Creating new connector ncbi.gene for database class ncbi.gene .
biodb.INFO [2024-05-18 16:01:42.871][biodb::testThat]
biodb.INFO [2024-05-18 16:01:42.872][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-05-18 16:01:42.873][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:01:42.874][biodb::testThat]
biodb.TRACE[2024-05-18 16:01:42.879][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-2833-content.xml".
biodb.DEBUG[2024-05-18 16:01:42.880][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:01:42.882][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-05-18 16:01:42.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:01:42.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:42.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:42.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:42.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:42.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:42.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:01:42.903][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:42.904][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:42.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:42.905][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:42.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:42.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:42.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:42.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:42.910][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:42.911][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:42.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:42.912][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:42.914][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:42.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:42.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:42.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:42.917][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:01:42.918][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:42.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:42.919][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:42.921][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:01:42.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:42.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:42.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:42.930][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:01:42.931][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:42.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:42.932][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:42.934][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:01:42.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:42.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:42.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:42.937][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:01:42.938][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:42.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:42.939][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:42.941][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:01:42.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:42.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:42.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:42.944][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:42.945][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:42.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:42.947][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:42.949][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:42.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:42.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:42.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:42.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:42.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:42.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:42.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:42.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:42.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:42.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:42.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:42.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:42.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:42.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:42.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:42.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:42.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:42.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:42.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:42.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:42.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:42.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:42.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:42.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:42.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:42.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:42.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:42.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:42.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:42.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:42.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:42.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:42.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:42.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:42.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:42.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:42.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:42.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:42.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:42.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:42.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:42.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:42.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:42.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:42.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:42.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:42.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:01:42.992][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2833.
biodb.TRACE[2024-05-18 16:01:42.994][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:42.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:42.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:42.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:42.998][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:42.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:42.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.001][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:01:43.015][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-05-18 16:01:43.038][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-05-18 16:01:43.039][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-05-18 16:01:43.040][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-05-18 16:01:43.053][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-05-18 16:01:43.054][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:01:43.055][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-05-18 16:01:43.065][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:01:43.066][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:01:43.068][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-05-18 16:01:43.068][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:01:43.069][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-05-18 16:01:43.070][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:01:43.071][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:01:43.085][self$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.DEBUG[2024-05-18 16:01:43.086][private$loadEntries] Creating entries from ids [1]: "CCDS14416.1".
biodb.DEBUG[2024-05-18 16:01:43.088][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-18 16:01:43.089][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14416.1".
biodb.TRACE[2024-05-18 16:01:43.091][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:01:43.093][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14416.1.html".
biodb.DEBUG[2024-05-18 16:01:43.094][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:01:43.095][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:01:43.096][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-05-18 16:01:43.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:01:43.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:43.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:43.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:43.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:43.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:43.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:01:43.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.122][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:43.123][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:43.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.125][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.126][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:43.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:43.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.133][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:01:43.161][self$createEntryFromContent] Accession numbers: CCDS14416.1.
biodb.TRACE[2024-05-18 16:01:43.162][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:43.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:43.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.171][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:43.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:43.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.174][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:43.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:43.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.177][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:01:43.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:01:43.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.180][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:01:43.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:01:43.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.183][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:01:43.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:01:43.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.186][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:01:43.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:01:43.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:43.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:43.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:43.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:43.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.228][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:43.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:43.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:43.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:43.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.284][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.286][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.287][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.298][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:01:43.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:43.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.302][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:43.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:43.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.305][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:43.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:43.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.308][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:01:43.309][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:43.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.310][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.311][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:01:43.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:43.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.321][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:01:43.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:43.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.325][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:43.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:43.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.328][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:43.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:43.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.331][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:01:43.332][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:43.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.334][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.334][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:01:43.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:43.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.345][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:43.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:43.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.348][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:43.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:43.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.352][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:43.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:43.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.355][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:43.355][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:43.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.357][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.358][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:43.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:43.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.373][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.384][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.385][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.386][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.387][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.398][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:43.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:43.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.401][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:43.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:43.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.404][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:43.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:43.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.407][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:43.408][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:43.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.410][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.410][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:43.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:43.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.421][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:01:43.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:43.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.425][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:01:43.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:43.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.428][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:01:43.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:43.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.431][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:01:43.432][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:43.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.434][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.434][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:01:43.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:43.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.445][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:43.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:43.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.448][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:43.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:43.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.452][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:43.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:43.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.455][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:43.456][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:43.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.462][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.463][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:43.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:43.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.473][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:43.474][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:43.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.476][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.480][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:43.481][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:43.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.483][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.487][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.488][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.490][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.494][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:43.495][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:43.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.496][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.501][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:43.502][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:43.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.503][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.507][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:01:43.508][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:43.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.510][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.514][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.515][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.516][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.521][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:43.521][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:43.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.523][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.530][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3002-content.xml".
biodb.DEBUG[2024-05-18 16:01:43.531][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:01:43.532][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-05-18 16:01:43.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:01:43.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:43.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:43.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:43.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:43.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:43.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:01:43.550][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.551][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.553][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.557][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:43.558][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:43.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.564][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.566][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:43.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:43.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.569][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:01:43.570][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:43.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.571][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.573][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:01:43.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:43.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.576][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:01:43.577][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:43.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.578][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.580][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:01:43.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:43.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.583][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:01:43.584][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:43.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.585][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.586][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:01:43.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:43.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.589][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:43.590][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:43.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.592][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.594][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:43.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:43.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.602][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:43.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:43.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.605][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:43.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:43.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:43.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:43.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:43.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:43.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:01:43.633][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3002.
biodb.TRACE[2024-05-18 16:01:43.635][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:43.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:43.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.638][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:43.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:43.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.641][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:43.653][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:43.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:43.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:01:43.656][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-05-18 16:01:43.657][private$loadEntries] Creating entries from ids [1]: "CCDS9633.1".
biodb.DEBUG[2024-05-18 16:01:43.692][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-18 16:01:43.705][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS9633.1".
biodb.TRACE[2024-05-18 16:01:43.706][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-18 16:01:43.707][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:01:43.708][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:01:43.708][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-18 16:01:43.709][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:01:43.714][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-05-18 16:01:43.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:01:43.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:43.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:43.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:43.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:43.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:43.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:43.727][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.DEBUG[2024-05-18 16:01:43.743][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:01:43.744][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:01:43.745][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.TRACE[2024-05-18 16:01:47.960][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1).
biodb.DEBUG[2024-05-18 16:01:49.389][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:01:49.392][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.content"
biodb.TRACE[2024-05-18 16:01:49.404][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.request"
biodb.TRACE[2024-05-18 16:01:49.407][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS9633.1.html"
biodb.DEBUG[2024-05-18 16:01:49.409][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:01:49.410][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:01:49.411][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-05-18 16:01:49.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:01:49.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:49.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:49.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:49.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:49.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:49.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:01:49.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.444][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:49.445][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:49.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.447][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.448][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:49.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:49.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.451][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:49.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:49.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.455][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:49.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:49.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.461][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:49.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:49.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:01:49.484][self$createEntryFromContent] Accession numbers: CCDS9633.1.
biodb.TRACE[2024-05-18 16:01:49.492][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:49.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:49.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.495][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:49.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:49.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.499][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:49.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:49.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.502][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:01:49.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:01:49.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.505][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:01:49.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:01:49.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.509][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:01:49.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:01:49.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.512][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:01:49.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:01:49.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:49.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:49.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:49.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:49.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:49.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:49.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:49.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:49.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.582][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.583][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.584][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.596][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:01:49.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:49.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.600][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:49.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:49.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.603][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:49.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:49.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.611][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:01:49.612][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:49.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.613][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.614][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:01:49.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:49.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.624][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:01:49.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:49.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.628][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:49.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:49.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.631][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:49.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:49.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.634][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:01:49.635][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:49.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.637][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.637][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:01:49.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:49.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.648][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:49.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:49.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.652][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:49.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:49.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.655][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:49.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:49.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.659][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:49.660][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:49.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.661][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.662][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:49.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:49.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:49.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:49.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.676][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:49.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:49.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.679][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:49.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:49.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.683][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:49.684][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:49.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.685][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:49.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:49.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.701][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:49.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:49.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.705][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:49.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:49.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.708][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:49.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:49.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.711][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:49.712][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:49.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.714][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.715][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:49.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:49.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.725][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:01:49.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:49.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.729][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:01:49.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:49.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.732][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:01:49.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:49.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.736][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:01:49.736][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:49.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.738][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.739][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:01:49.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:49.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.749][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:49.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:49.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.753][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:49.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:49.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.756][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:49.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:49.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.759][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:49.760][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:49.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.762][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.762][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:49.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:49.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.773][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:49.774][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:49.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.776][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.785][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:49.786][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:49.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.787][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.792][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.793][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.794][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.799][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:49.800][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:49.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.801][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.806][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:49.807][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:49.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.808][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.813][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:01:49.814][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:49.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.815][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.820][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:49.821][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:49.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.823][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.827][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:49.828][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:49.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.830][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.840][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3627-content.xml".
biodb.DEBUG[2024-05-18 16:01:49.841][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:01:49.842][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-05-18 16:01:49.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:01:49.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:49.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:49.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:49.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:49.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:49.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:01:49.871][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.872][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.874][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.879][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:49.880][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:49.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.882][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.884][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:49.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:49.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.887][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:01:49.888][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:49.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.889][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.891][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:01:49.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:49.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.899][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:01:49.900][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:49.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.902][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.904][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:01:49.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:49.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.907][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:01:49.908][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:49.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.909][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.911][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:01:49.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:49.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.915][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:49.915][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:49.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.917][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.920][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:49.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:49.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:49.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:49.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.930][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:49.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:49.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:49.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:49.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:49.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:49.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:49.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:49.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:01:49.963][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3627.
biodb.TRACE[2024-05-18 16:01:49.965][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:49.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:49.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.968][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:49.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:49.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.972][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:49.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:49.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:49.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:49.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:49.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:49.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:49.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:49.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:01:49.987][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-05-18 16:01:49.989][private$loadEntries] Creating entries from ids [1]: "CCDS43240.1".
biodb.DEBUG[2024-05-18 16:01:49.990][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-18 16:01:49.992][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS43240.1".
biodb.TRACE[2024-05-18 16:01:49.994][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:01:49.996][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2024-05-18 16:01:49.997][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:01:49.998][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:01:49.999][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-05-18 16:01:50.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:01:50.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:50.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:50.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:50.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:50.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:50.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:01:50.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.030][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:50.031][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:50.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.033][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.034][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:50.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:50.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.038][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:50.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:50.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.041][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:50.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:50.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:50.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:50.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:01:50.079][self$createEntryFromContent] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-05-18 16:01:50.080][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:50.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:50.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.084][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:50.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:50.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.087][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:50.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:50.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.096][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:01:50.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:01:50.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.100][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:01:50.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:01:50.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.103][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:01:50.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:01:50.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.106][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:01:50.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:01:50.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.118][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:50.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:50.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.150][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:50.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:50.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:50.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:50.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:50.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:50.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.177][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.178][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.184][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.196][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:01:50.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:50.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.199][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:50.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:50.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.202][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:50.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:50.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.206][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:01:50.207][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:50.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.208][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.209][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:01:50.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:50.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.220][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:01:50.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:50.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.224][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:50.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:50.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.227][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:50.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:50.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.231][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:01:50.231][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:50.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.233][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.234][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:01:50.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:50.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.245][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:50.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:50.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.249][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:50.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:50.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.253][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:50.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:50.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.256][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:50.257][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:50.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.259][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.260][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:50.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:50.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.278][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:50.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:50.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:50.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:50.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.285][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:50.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:50.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.288][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:50.289][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:50.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.291][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.292][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:50.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:50.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.303][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:50.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:50.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.307][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:50.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:50.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.310][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:50.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:50.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.313][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:50.314][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:50.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.316][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.317][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:50.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:50.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.328][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:01:50.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:50.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.331][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:01:50.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:50.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.334][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:01:50.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:50.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.338][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:01:50.339][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:50.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.340][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.341][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:01:50.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:50.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.352][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:50.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:50.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.356][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:50.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:50.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.364][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:50.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:50.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.368][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:50.368][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:50.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.370][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.371][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:50.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:50.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.382][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:50.383][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:50.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.385][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.390][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:50.391][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:50.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.392][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.397][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.398][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.399][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.404][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:50.405][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:50.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.406][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.411][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:50.412][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:50.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.413][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.418][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:01:50.419][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:50.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.420][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.425][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:50.426][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:50.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.428][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.432][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:50.433][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:50.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.434][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.442][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-4316-content.xml".
biodb.DEBUG[2024-05-18 16:01:50.443][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:01:50.444][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-05-18 16:01:50.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:01:50.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:50.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:50.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:50.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:50.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:50.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:01:50.471][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.472][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.474][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.478][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:50.479][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:50.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.480][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.482][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:50.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:50.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.485][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:01:50.486][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:50.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.487][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.489][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:01:50.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:50.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.492][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:01:50.493][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:50.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.494][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.496][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:01:50.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:50.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.499][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:01:50.500][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:50.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.501][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.503][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:01:50.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:50.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.506][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:50.507][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:50.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.509][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.511][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:50.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:50.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:50.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:50.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:50.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:50.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.522][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:50.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:50.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:50.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:50.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:50.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:50.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:01:50.557][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 4316.
biodb.TRACE[2024-05-18 16:01:50.558][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:50.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:50.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.561][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:50.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:50.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:50.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:50.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:50.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:50.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:50.571][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:50.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:50.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:50.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:01:50.574][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-05-18 16:01:50.575][private$loadEntries] Creating entries from ids [1]: "CCDS8317.1".
biodb.DEBUG[2024-05-18 16:01:50.576][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-18 16:01:50.577][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS8317.1".
biodb.TRACE[2024-05-18 16:01:50.578][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-18 16:01:50.579][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:01:50.580][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:01:50.581][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-18 16:01:50.582][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:01:50.582][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-05-18 16:01:50.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:01:50.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:50.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:50.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:50.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:50.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:50.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:50.624][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.DEBUG[2024-05-18 16:01:50.636][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:01:50.637][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:01:50.649][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.TRACE[2024-05-18 16:01:52.196][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1).
biodb.DEBUG[2024-05-18 16:01:53.718][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:01:53.721][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.content"
biodb.TRACE[2024-05-18 16:01:53.724][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.request"
biodb.TRACE[2024-05-18 16:01:53.727][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS8317.1.html"
biodb.DEBUG[2024-05-18 16:01:53.728][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:01:53.729][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:01:53.730][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-05-18 16:01:53.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:01:53.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:53.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:53.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:53.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:53.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:53.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:01:53.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:53.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:53.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.755][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:53.756][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:53.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.758][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.759][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:53.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:53.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:53.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:53.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.773][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:53.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:53.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:53.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:53.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.779][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:53.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:53.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:53.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:53.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:53.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:53.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:53.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:53.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:53.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:53.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:53.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:53.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:53.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:53.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:01:53.801][self$createEntryFromContent] Accession numbers: CCDS8317.1.
biodb.TRACE[2024-05-18 16:01:53.802][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:53.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:53.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.805][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:53.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:53.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.808][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:53.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:53.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.812][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:01:53.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:01:53.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.815][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:01:53.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:01:53.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.818][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:01:53.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:01:53.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.822][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:01:53.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:01:53.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:53.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:53.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:53.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:53.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:53.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:53.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:53.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:53.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:53.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:53.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:53.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:53.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:53.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:53.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:53.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:53.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.875][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:53.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:53.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:53.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:53.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:53.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:53.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:53.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:53.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:53.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:53.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:53.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:53.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.900][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:53.901][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:53.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.902][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:53.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:53.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.913][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:01:53.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:53.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.917][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:53.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:53.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.920][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:53.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:53.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.924][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:01:53.925][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:53.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.926][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.927][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:01:53.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:53.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.938][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:01:53.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:53.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.947][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:53.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:53.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.950][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:53.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:53.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.954][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:01:53.955][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:53.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.956][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.957][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:01:53.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:53.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.967][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:53.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:53.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.970][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:53.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:53.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.974][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:53.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:53.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.977][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:53.978][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:53.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.979][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.980][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:53.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:53.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.991][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:53.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:53.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:53.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:53.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:53.997][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:53.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:53.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:53.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.000][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:54.001][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:54.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.002][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.003][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:54.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:54.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.014][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:54.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:54.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.017][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:54.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:54.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.020][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:54.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:54.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.028][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:54.029][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:54.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.031][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.032][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:54.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:54.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.045][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:01:54.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:54.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.049][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:01:54.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:54.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.052][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:01:54.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:54.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.055][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:01:54.056][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:54.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.058][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.059][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:01:54.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:54.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.069][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:54.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:54.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.072][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:54.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:54.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.076][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:54.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:54.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.079][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:54.080][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:54.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.082][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.082][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:54.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:54.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.093][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:54.094][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:54.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.096][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.100][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:54.101][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:54.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.103][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.108][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:54.109][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:54.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.110][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.119][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:54.121][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:54.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.123][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.127][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:54.128][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:54.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.130][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.134][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:01:54.135][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:54.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.137][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.141][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:54.142][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:54.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.144][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.148][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:54.149][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:54.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.151][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.163][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-50943-content.xml".
biodb.DEBUG[2024-05-18 16:01:54.164][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:01:54.165][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-05-18 16:01:54.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:01:54.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:54.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:54.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:54.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:54.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:54.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:01:54.202][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:54.203][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:54.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.205][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:54.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:54.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.210][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:54.211][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:54.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.213][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.215][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:54.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:54.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.219][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:01:54.220][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:54.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.221][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.223][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:01:54.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:54.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.227][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:01:54.228][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:54.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.229][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.231][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:01:54.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:54.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.234][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:01:54.235][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:54.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.237][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.239][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:01:54.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:54.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.248][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:54.249][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:54.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.251][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.256][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:54.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:54.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:54.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:54.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:54.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:54.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.272][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:54.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:54.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:54.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:54.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.278][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:54.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:54.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:54.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:54.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:54.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:54.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:54.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:54.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:54.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:54.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:54.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:54.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:54.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:54.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:01:54.301][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 50943.
biodb.TRACE[2024-05-18 16:01:54.302][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:54.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:54.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.305][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:54.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:54.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:54.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:54.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:54.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:54.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:54.315][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:54.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:54.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:54.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:01:54.318][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-05-18 16:01:54.319][private$loadEntries] Creating entries from ids [1]: "CCDS14323.1".
biodb.DEBUG[2024-05-18 16:01:54.319][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-18 16:01:54.321][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14323.1".
biodb.TRACE[2024-05-18 16:01:54.322][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-18 16:01:54.323][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:01:54.324][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:01:54.324][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-18 16:01:54.325][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:01:54.326][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-05-18 16:01:54.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:01:54.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:54.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:54.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:54.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:54.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:54.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:54.355][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.DEBUG[2024-05-18 16:01:54.358][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:01:54.377][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:01:54.378][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.TRACE[2024-05-18 16:01:55.777][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1).
biodb.DEBUG[2024-05-18 16:01:57.334][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:01:57.336][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.content"
biodb.TRACE[2024-05-18 16:01:57.340][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.request"
biodb.TRACE[2024-05-18 16:01:57.342][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14323.1.html"
biodb.DEBUG[2024-05-18 16:01:57.344][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:01:57.345][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:01:57.346][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-05-18 16:01:57.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:01:57.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:57.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:57.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:57.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:57.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:57.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:01:57.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.376][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:57.377][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:57.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.378][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.380][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:57.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:57.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:57.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:57.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:57.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:57.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.393][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:57.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:57.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:01:57.426][self$createEntryFromContent] Accession numbers: CCDS14323.1.
biodb.TRACE[2024-05-18 16:01:57.427][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:57.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:57.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.430][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:57.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:57.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.433][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:57.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:57.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.436][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:01:57.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:01:57.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.440][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:01:57.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:01:57.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.443][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:01:57.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:01:57.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.446][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:01:57.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:01:57.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:57.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:57.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.487][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:57.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:57.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:57.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:57.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:57.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:57.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.517][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.517][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.519][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.531][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:01:57.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:57.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.534][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:57.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:57.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.537][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:57.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:57.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.541][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:01:57.542][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:57.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.543][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.544][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:01:57.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:57.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.555][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:01:57.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:57.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.558][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:57.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:57.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.562][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:57.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:57.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.565][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:01:57.566][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:57.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.568][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.568][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:01:57.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:57.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.579][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:57.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:57.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.588][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:57.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:57.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.591][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:57.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:57.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.595][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:57.595][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:57.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.597][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.598][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:57.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:57.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.608][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:57.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:57.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.612][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:57.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:57.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.615][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:57.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:57.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.619][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:57.620][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:57.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.621][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:57.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:57.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.633][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:57.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:57.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.636][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:57.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:57.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.640][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:57.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:57.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.643][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:57.644][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:57.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.645][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.646][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:57.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:57.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.657][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:01:57.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:57.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.660][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:01:57.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:57.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:01:57.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:57.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.671][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:01:57.673][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:57.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.674][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.675][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:01:57.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:57.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.685][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:57.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:57.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.689][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:57.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:57.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.692][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:57.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:57.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.696][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:57.697][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:57.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.698][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.699][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:01:57.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:57.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.710][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:57.711][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:57.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.712][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.717][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:57.718][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:57.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.720][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.724][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.725][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.727][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.731][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:57.732][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:57.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.734][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.738][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:57.739][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:57.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.741][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.746][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:01:57.746][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:57.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.748][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.753][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:57.754][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:57.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.760][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.765][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:57.766][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:57.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.768][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.775][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-5551-content.xml".
biodb.DEBUG[2024-05-18 16:01:57.776][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:01:57.777][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-05-18 16:01:57.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:01:57.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:57.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:57.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:57.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:57.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:57.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:01:57.796][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.797][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.799][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.804][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:57.805][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:57.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.806][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.808][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:01:57.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:01:57.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.811][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:01:57.812][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:57.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.814][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.815][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:01:57.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:01:57.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.818][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:01:57.819][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:57.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.821][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.822][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:01:57.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:01:57.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.826][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:01:57.827][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:57.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.828][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.830][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:01:57.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:01:57.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.833][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:57.834][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:57.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.836][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.838][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:57.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:01:57.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:57.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:57.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:57.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:57.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.850][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:57.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:57.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:57.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:01:57.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:01:57.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:01:57.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:01:57.885][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 5551.
biodb.TRACE[2024-05-18 16:01:57.886][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:57.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:57.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.890][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:01:57.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:01:57.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.893][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:57.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:57.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.896][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:57.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:57.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:01:57.900][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:57.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:01:57.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:01:57.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:01:57.903][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-05-18 16:01:57.904][private$loadEntries] Creating entries from ids [1]: "CCDS7305.1".
biodb.DEBUG[2024-05-18 16:01:57.905][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-18 16:01:57.906][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS7305.1".
biodb.TRACE[2024-05-18 16:01:57.907][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-18 16:01:57.908][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:01:57.909][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:01:57.910][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-18 16:01:57.910][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:01:57.911][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-05-18 16:01:57.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:01:57.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:01:57.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:01:57.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:01:57.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:01:57.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:01:57.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:01:57.923][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.DEBUG[2024-05-18 16:01:57.926][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:01:57.927][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:01:57.928][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.TRACE[2024-05-18 16:01:59.491][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1).
biodb.DEBUG[2024-05-18 16:02:01.187][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:02:01.189][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.content"
biodb.TRACE[2024-05-18 16:02:01.193][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.request"
biodb.TRACE[2024-05-18 16:02:01.199][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS7305.1.html"
biodb.DEBUG[2024-05-18 16:02:01.204][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:02:01.205][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:02:01.206][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-05-18 16:02:01.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:01.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:01.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:01.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:01.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:01.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:01.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:01.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.235][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:02:01.235][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:01.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.237][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.238][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:02:01.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:01.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.242][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:01.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:01.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:01.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:01.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.251][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:01.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:01.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:01.274][self$createEntryFromContent] Accession numbers: CCDS7305.1.
biodb.TRACE[2024-05-18 16:02:01.275][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:01.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:01.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.278][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:01.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:01.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.282][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:01.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:01.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.285][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:02:01.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:02:01.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.440][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:02:01.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:02:01.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.443][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:02:01.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:02:01.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.446][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:02:01.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:02:01.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:01.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:01.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:01.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:01.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.491][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:01.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:01.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:01.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:01.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.513][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.513][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.515][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.526][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:01.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:01.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.529][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:01.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:01.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.532][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:01.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:01.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.536][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:01.537][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:01.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.538][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.539][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:01.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:01.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.550][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:02:01.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:01.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.554][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:01.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:01.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.557][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:01.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:01.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.561][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:02:01.562][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:01.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.563][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.564][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:02:01.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:01.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.576][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:01.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:01.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.580][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:01.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:01.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.583][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:01.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:01.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.587][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:01.587][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:01.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.589][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.590][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:01.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:01.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:01.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:01.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.605][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:01.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:01.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.609][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:01.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:01.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.613][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:01.614][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:01.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.616][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:01.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:01.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.628][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:01.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:01.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.632][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:01.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:01.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.636][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:01.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:01.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.640][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:01.641][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:01.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.642][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.643][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:01.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:01.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.655][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:02:01.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:01.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.658][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:01.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:01.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.662][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:01.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:01.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.665][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:02:01.666][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:01.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.668][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.669][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:02:01.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:01.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.681][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:02:01.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:01.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.684][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:01.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:01.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.688][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:01.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:01.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.692][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:02:01.692][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:01.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.694][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.695][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:02:01.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:01.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.706][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:01.707][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:01.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.709][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.714][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:01.715][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:01.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.717][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.721][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.723][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.724][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.729][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:01.730][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:01.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.732][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.737][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:01.739][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:01.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.740][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.745][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:01.746][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:01.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.748][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.753][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:01.755][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:01.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.757][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.762][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:01.763][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:01.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.765][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.774][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-916-content.xml".
biodb.DEBUG[2024-05-18 16:02:01.775][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:02:01.776][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-05-18 16:02:01.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:01.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:01.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:01.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:01.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:01.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:01.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:01.802][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.803][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.805][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.810][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:01.811][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:01.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.814][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.816][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:01.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:01.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.819][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:02:01.820][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:01.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.822][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.823][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:02:01.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:01.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.827][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:01.828][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:01.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.829][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.831][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:01.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:01.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.834][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:02:01.835][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:01.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.837][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.838][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:02:01.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:01.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.841][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:01.842][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:01.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.844][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.846][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:01.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:01.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:01.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:01.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:01.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:01.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:01.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:01.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:01.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:01.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:01.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:01.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:01.885][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 916.
biodb.TRACE[2024-05-18 16:02:01.887][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:01.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:01.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.890][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:01.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:01.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.893][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:01.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:01.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:01.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:01.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:01.900][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:01.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:01.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:01.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:01.903][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-05-18 16:02:01.904][private$loadEntries] Creating entries from ids [1]: "CCDS31685.1".
biodb.DEBUG[2024-05-18 16:02:01.905][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-18 16:02:01.906][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS31685.1".
biodb.TRACE[2024-05-18 16:02:01.907][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-18 16:02:01.908][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:02:01.909][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:02:01.910][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-18 16:02:01.911][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:02:01.912][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-05-18 16:02:01.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:01.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:01.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:01.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:01.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:01.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:01.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:01.923][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.DEBUG[2024-05-18 16:02:01.925][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:02:01.926][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:02:01.927][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.TRACE[2024-05-18 16:02:03.400][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1).
biodb.DEBUG[2024-05-18 16:02:04.813][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:02:04.815][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.content"
biodb.TRACE[2024-05-18 16:02:04.818][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.request"
biodb.TRACE[2024-05-18 16:02:04.820][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS31685.1.html"
biodb.DEBUG[2024-05-18 16:02:04.821][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:02:04.822][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:02:04.823][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-05-18 16:02:04.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:04.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:04.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:04.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:04.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:04.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:04.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:04.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:04.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:04.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.848][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:02:04.848][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:04.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.850][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.851][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:02:04.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:04.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:04.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:04.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:04.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:04.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:04.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:04.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:04.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:04.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:04.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:04.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:04.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:04.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:04.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:04.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:04.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:04.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:04.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:04.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:04.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:04.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:04.884][self$createEntryFromContent] Accession numbers: CCDS31685.1.
biodb.TRACE[2024-05-18 16:02:04.885][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:04.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:04.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.888][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:04.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:04.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.891][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:04.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:04.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.894][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:02:04.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:02:04.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.897][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:02:04.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:02:04.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.900][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:02:04.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:02:04.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.904][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:02:04.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:02:04.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:04.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:04.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.915][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:04.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:04.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:04.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:04.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:04.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:04.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:04.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:04.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:04.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:04.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:04.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:04.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:04.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:04.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.941][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:04.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:04.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:04.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:04.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.947][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:04.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:04.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:04.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:04.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:04.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:04.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:04.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:04.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.966][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:04.966][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:04.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.968][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:04.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:04.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.979][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:04.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:04.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.982][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:04.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:04.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.996][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:04.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:04.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:04.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:04.999][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:04.999][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:05.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.001][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.002][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:05.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:05.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.012][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:02:05.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:05.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.015][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:05.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:05.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.018][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:05.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:05.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.021][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:02:05.022][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:05.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.024][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.024][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:02:05.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:05.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.034][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.038][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.041][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.044][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.045][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.046][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.047][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:05.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:05.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.060][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:05.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:05.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:05.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:05.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.066][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:05.067][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:05.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.069][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:05.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:05.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.080][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:05.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:05.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.083][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:05.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:05.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.087][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:05.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:05.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.090][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:05.091][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:05.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.093][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.093][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:05.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:05.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.104][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:05.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:05.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.107][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:05.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:05.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.110][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:05.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:05.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.113][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:05.114][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:05.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.116][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.116][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:05.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:05.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.127][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:02:05.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:05.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.130][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:05.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:05.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.133][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:05.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:05.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.136][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:02:05.137][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:05.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.138][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.139][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:02:05.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:05.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.149][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:05.150][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:05.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.151][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.155][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:05.156][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:05.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.158][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.162][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.163][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.165][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.169][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:05.170][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:05.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.171][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.176][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:05.177][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:05.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.178][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.183][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:05.184][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:05.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.185][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.190][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:05.191][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:05.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.192][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.197][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.197][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.199][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.204][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-9606-content.xml".
biodb.DEBUG[2024-05-18 16:02:05.205][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:02:05.206][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-05-18 16:02:05.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:05.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:05.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:05.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:05.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:05.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:05.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:05.217][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.218][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.219][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.224][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:05.225][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:05.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.226][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.227][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:05.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:05.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.231][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:02:05.232][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:05.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.233][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.234][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:05.235][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:05.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.237][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.238][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:05.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:05.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.241][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:02:05.242][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:05.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.243][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.244][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.245][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.247][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.248][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.251][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:05.281][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 9606.
biodb.TRACE[2024-05-18 16:02:05.282][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:05.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:05.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.285][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:05.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:05.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:05.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:05.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.292][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:02:05.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:02:05.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.295][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:02:05.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:02:05.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.303][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:02:05.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:02:05.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.306][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:02:05.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:02:05.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.344][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.347][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.368][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.369][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.371][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.382][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:05.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:05.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.385][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:05.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:05.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.388][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:05.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:05.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.391][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:05.392][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:05.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.394][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.394][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:05.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:05.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.404][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:05.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:05.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.408][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:05.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:05.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.411][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:05.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:05.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.414][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:05.415][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:05.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.417][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.417][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:05.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:05.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.428][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.428][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.430][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.434][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:05.435][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:05.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.436][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.441][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:05.442][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:05.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.443][ef$get] fields variable is a list.
biodb.INFO [2024-05-18 16:02:05.450][biodb::testThat]
biodb.INFO [2024-05-18 16:02:05.451][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-05-18 16:02:05.452][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:05.453][biodb::testThat]
biodb.DEBUG[2024-05-18 16:02:05.454][private$loadEntries] Creating entries from ids [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.DEBUG[2024-05-18 16:02:05.455][conn$getEntryContent] Get NCBI Gene entry content(s) for 8 id(s)...
biodb.TRACE[2024-05-18 16:02:05.457][cch$loadFileContent] Trying to load 8 files from cache: [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.TRACE[2024-05-18 16:02:05.460][cch$loadFileContent] file.exist = [8]: "TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE".
biodb.TRACE[2024-05-18 16:02:05.491][loadFileContents] Loaded 8 files from cache: [8]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/2833.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3002.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3627.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/4316.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/50943.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/5551.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/916.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/9606.xml".
biodb.DEBUG[2024-05-18 16:02:05.492][conn$getEntryContent] 8 NCBI Gene entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:02:05.494][self$createEntryFromContent] Creating NCBI Gene entries from 8 content(s).
biodb.DEBUG[2024-05-18 16:02:05.495][self$createEntryFromContent] Parsing 8 NCBI Gene entries.
biodb.DEBUG[2024-05-18 16:02:05.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:05.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:05.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:05.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:05.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:05.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:05.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:05.513][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.514][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.516][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.520][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:05.521][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:05.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.523][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.524][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:05.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:05.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.527][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:02:05.528][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:05.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.530][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.531][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:02:05.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:05.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.534][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:05.535][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:05.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.536][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.538][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:05.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:05.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.541][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:02:05.542][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:05.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.543][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.545][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:02:05.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:05.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.548][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.549][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.551][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.553][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:05.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:05.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.566][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.572][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:05.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:05.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:05.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:05.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:05.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:05.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:05.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:05.604][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.605][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.607][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.611][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:05.612][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:05.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.614][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.615][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:05.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:05.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.619][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:02:05.619][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:05.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.621][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.622][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:02:05.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:05.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.626][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:05.627][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:05.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.628][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.630][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:05.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:05.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.633][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:02:05.634][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:05.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.635][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.637][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:02:05.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:05.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.640][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.641][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.643][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.645][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:05.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:05.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:05.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:05.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:05.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:05.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:05.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:05.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:05.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:05.711][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.712][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.714][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.719][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:05.720][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:05.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.721][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.723][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:05.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:05.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.727][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:02:05.727][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:05.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.729][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.731][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:02:05.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:05.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.734][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:05.735][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:05.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.737][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.739][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:05.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:05.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.742][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:02:05.743][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:05.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.744][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.746][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:02:05.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:05.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.749][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.750][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.752][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.756][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.761][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:05.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:05.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:05.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:05.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:05.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:05.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:05.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:05.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:05.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:05.810][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.811][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.813][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.818][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:05.819][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:05.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.820][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.822][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:05.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:05.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.826][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:02:05.826][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:05.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.828][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.830][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:02:05.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:05.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.833][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:05.834][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:05.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.835][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.837][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:05.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:05.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.840][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:02:05.841][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:05.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.842][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.844][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:02:05.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:05.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.847][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.848][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.849][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.852][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:05.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:05.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:05.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:05.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:05.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:05.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:05.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:05.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:05.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:05.923][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.924][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.926][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.931][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:05.932][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:05.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.934][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.936][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:05.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:05.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.939][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:02:05.940][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:05.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.942][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.944][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:02:05.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:05.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.948][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:05.949][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:05.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.950][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.953][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:05.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:05.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.956][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:02:05.957][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:05.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.958][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.961][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:02:05.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:05.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.964][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.965][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.966][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.973][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:05.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:05.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:05.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:05.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.995][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:05.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:05.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:05.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:05.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:06.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:06.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:06.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:06.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:06.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:06.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:06.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:06.026][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.027][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.029][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.034][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:06.035][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:06.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.037][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.038][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:06.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:06.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.041][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:02:06.042][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:06.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.044][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.045][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:02:06.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:06.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.048][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:06.049][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:06.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.051][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.052][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:06.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:06.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.055][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:02:06.056][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:06.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.058][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.059][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:02:06.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:06.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.062][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:06.063][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:06.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.065][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.067][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:06.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:06.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:06.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:06.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.094][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:06.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:06.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:06.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:06.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:06.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:06.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:06.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:06.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:06.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:06.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:06.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:06.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:06.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:06.133][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.134][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.136][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.140][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:06.141][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:06.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.143][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.144][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:06.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:06.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.147][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:02:06.148][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:06.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.150][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.151][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:02:06.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:06.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.154][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:06.155][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:06.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.157][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.158][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:06.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:06.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.161][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:02:06.162][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:06.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.164][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.165][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:02:06.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:06.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.168][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:06.169][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:06.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.170][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.173][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:06.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:06.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:06.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:06.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:06.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:06.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:06.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:06.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.190][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:06.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:06.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:06.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:06.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:06.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:06.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:06.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:06.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:06.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:06.213][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.213][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.215][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.219][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:06.220][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:06.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.221][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.222][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:02:06.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:02:06.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.225][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:02:06.226][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:02:06.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.228][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.229][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:06.230][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:06.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.231][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.232][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:02:06.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:02:06.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.235][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:02:06.236][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:06.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.238][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.238][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:06.239][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:02:06.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.241][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.242][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:06.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:06.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:06.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:06.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.251][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:06.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:02:06.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:06.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:06.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:06.340][self$createEntryFromContent] Accession numbers: 2833, 3002, 3627, 4316, 50943, 5551, 916, 9606.
biodb.TRACE[2024-05-18 16:02:06.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-18 16:02:06.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-18 16:02:06.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:02:06.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:02:06.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:02:06.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:02:06.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-18 16:02:06.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-18 16:02:06.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:02:06.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:02:06.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:02:06.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:02:06.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-18 16:02:06.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-18 16:02:06.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:02:06.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:02:06.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:02:06.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:02:06.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-18 16:02:06.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-18 16:02:06.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:02:06.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:02:06.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:02:06.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:02:06.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-18 16:02:06.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-18 16:02:06.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:02:06.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:02:06.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:02:06.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:02:06.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-18 16:02:06.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-18 16:02:06.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:02:06.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:02:06.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:02:06.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:02:06.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-18 16:02:06.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-18 16:02:06.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:02:06.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:02:06.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:02:06.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:02:06.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-18 16:02:06.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-18 16:02:06.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:02:06.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:02:06.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:02:06.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:02:06.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-18 16:02:06.464][biodb::testThat]
biodb.INFO [2024-05-18 16:02:06.465][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-05-18 16:02:06.466][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:06.466][biodb::testThat]
biodb.TRACE[2024-05-18 16:02:06.469][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:06.470][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:06.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.471][ef$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:06.473][function(conn, opt)] Testing searchForEntries() with entry "2833" and field "name".
biodb.TRACE[2024-05-18 16:02:06.484][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:06.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:06.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:06.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:06.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.491][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:06.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:06.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:06.497][function(conn, opt)] With value "GPR9".
biodb.DEBUG[2024-05-18 16:02:06.502][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-05-18 16:02:06.505][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:06.506][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2024-05-18 16:02:06.507][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:06.509][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.DEBUG[2024-05-18 16:02:06.510][function(conn, opt)] With found IDs [1]: "2833".
biodb.INFO [2024-05-18 16:02:06.525][biodb::testThat]
biodb.INFO [2024-05-18 16:02:06.526][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-05-18 16:02:06.527][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:06.527][biodb::testThat]
biodb.TRACE[2024-05-18 16:02:06.537][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:06.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:06.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.541][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:06.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:06.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.544][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:06.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:06.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:06.568][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-05-18 16:02:06.570][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:06.571][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2024-05-18 16:02:06.572][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:06.573][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.INFO [2024-05-18 16:02:06.589][biodb::testThat]
biodb.INFO [2024-05-18 16:02:06.590][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-05-18 16:02:06.591][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:06.591][biodb::testThat]
biodb.TRACE[2024-05-18 16:02:06.600][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:06.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:06.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.604][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:06.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:06.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:06.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:06.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:06.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:06.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.615][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:06.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:06.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:06.618][private$computeField] Compute value for field "aa.seq".
biodb.TRACE[2024-05-18 16:02:06.619][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:06.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:06.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.622][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:06.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:06.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.626][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:06.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:06.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.629][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:02:06.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:02:06.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.632][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:02:06.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:02:06.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.636][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:02:06.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:02:06.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.639][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:02:06.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:02:06.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.643][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:06.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:06.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.647][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:06.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:06.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.650][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:02:06.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:02:06.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.653][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:02:06.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:02:06.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.656][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:02:06.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:02:06.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:06.660][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:02:06.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:02:06.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:06.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-18 16:02:06.669][biodb::testThat]
biodb.INFO [2024-05-18 16:02:06.669][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-05-18 16:02:06.670][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:06.671][biodb::testThat]
biodb.INFO [2024-05-18 16:02:06.681][biodb::testThat]
biodb.INFO [2024-05-18 16:02:06.682][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-05-18 16:02:06.683][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:06.683][biodb::testThat]
biodb.INFO [2024-05-18 16:02:06.690][biodb::testThat]
biodb.INFO [2024-05-18 16:02:06.691][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-05-18 16:02:06.692][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:06.693][biodb::testThat]
biodb.DEBUG[2024-05-18 16:02:06.696][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/gene?term=2833".
biodb.DEBUG[2024-05-18 16:02:10.912][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/gene?term=2833.
biodb.INFO [2024-05-18 16:02:13.987][biodb::testThat]
biodb.INFO [2024-05-18 16:02:13.988][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-05-18 16:02:13.989][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:13.989][biodb::testThat]
biodb.INFO [2024-05-18 16:02:13.995][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-18 16:02:13.997][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.gene from the request scheduler
biodb.INFO [2024-05-18 16:02:13.998][self$deleteConn] Connector "ncbi.gene" deleted.
biodb.DEBUG[2024-05-18 16:02:13.999][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-05-18 16:02:14.013][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-05-18 16:02:14.014][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-18 16:02:14.014][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:14.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:14.016][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.017][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-05-18 16:02:14.021][biodb::testContext]
biodb.INFO [2024-05-18 16:02:14.021][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-18 16:02:14.022][biodb::testContext] Test context - Pubchem comp long tests
biodb.INFO [2024-05-18 16:02:14.023][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-18 16:02:14.023][biodb::testContext]
biodb.INFO [2024-05-18 16:02:14.025][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-05-18 16:02:14.026][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-05-18 16:02:14.030][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-18 16:02:14.031][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-18 16:02:14.031][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-18 16:02:14.032][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.034][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-18 16:02:14.035][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-18 16:02:14.036][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.038][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-18 16:02:14.039][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-18 16:02:14.039][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.041][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-18 16:02:14.042][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-18 16:02:14.043][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-18 16:02:14.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.046][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-18 16:02:14.046][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-18 16:02:14.047][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-18 16:02:14.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.050][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-18 16:02:14.051][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-18 16:02:14.052][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.054][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-18 16:02:14.055][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-18 16:02:14.056][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-18 16:02:14.056][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.058][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-18 16:02:14.059][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-18 16:02:14.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.062][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-18 16:02:14.063][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-18 16:02:14.064][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-18 16:02:14.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.066][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-18 16:02:14.067][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-18 16:02:14.068][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-18 16:02:14.069][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-18 16:02:14.069][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-18 16:02:14.070][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-18 16:02:14.071][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.073][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-18 16:02:14.074][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-18 16:02:14.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.077][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-18 16:02:14.078][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-18 16:02:14.078][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.081][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-18 16:02:14.081][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-18 16:02:14.082][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.084][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-18 16:02:14.085][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-18 16:02:14.086][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.088][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-18 16:02:14.089][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-18 16:02:14.090][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.092][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-18 16:02:14.093][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-18 16:02:14.110][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-18 16:02:14.111][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.114][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-18 16:02:14.115][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-18 16:02:14.116][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-18 16:02:14.116][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.119][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-18 16:02:14.120][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:14.134][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-18 16:02:14.135][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.136][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:02:14.136][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.137][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:02:14.138][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:14.139][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:02:14.140][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-18 16:02:14.140][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:02:14.141][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.142][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-18 16:02:14.143][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:02:14.144][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:14.144][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.145][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:02:14.145][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-18 16:02:14.145][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-18 16:02:14.145][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-18 16:02:14.145][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-18 16:02:14.146][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:02:14.147][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:14.147][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:14.148][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:02:14.149][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:14.150][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:14.150][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:02:14.151][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:14.152][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:02:14.153][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:02:14.153][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:14.154][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:14.155][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-18 16:02:14.156][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:14.157][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-18 16:02:14.158][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.159][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:02:14.160][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.160][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:02:14.161][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:14.162][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:02:14.163][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-18 16:02:14.164][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:02:14.164][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.165][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-18 16:02:14.166][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:02:14.167][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:14.167][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.168][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:02:14.168][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-18 16:02:14.168][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-18 16:02:14.168][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-18 16:02:14.168][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-18 16:02:14.169][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:02:14.170][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:14.171][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:14.171][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:02:14.172][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:14.173][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:14.173][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:02:14.174][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:14.175][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:02:14.176][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:02:14.176][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:14.177][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:14.178][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-18 16:02:14.180][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.180][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-18 16:02:14.181][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.182][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:02:14.183][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.184][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:02:14.184][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:14.185][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:02:14.186][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-18 16:02:14.187][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:02:14.188][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:14.189][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-18 16:02:14.189][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:02:14.190][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:14.191][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.192][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:14.193][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:02:14.193][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:14.194][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:14.195][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:02:14.196][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:14.196][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:14.197][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:02:14.198][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:14.199][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:02:14.200][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:02:14.200][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:14.201][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:14.202][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-18 16:02:14.204][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.204][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-18 16:02:14.205][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.206][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:02:14.207][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.208][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:02:14.208][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:14.209][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:02:14.210][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-18 16:02:14.211][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:02:14.212][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:14.212][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-18 16:02:14.213][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:02:14.214][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:14.215][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.216][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:14.216][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:02:14.217][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:14.218][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:14.219][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:02:14.220][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:14.220][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:14.221][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:02:14.222][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:14.223][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:02:14.223][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:02:14.224][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:14.225][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:14.226][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-18 16:02:14.227][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.228][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.239][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.243][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.250][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.254][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.258][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.261][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.272][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.277][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.284][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.292][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-18 16:02:14.293][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-18 16:02:14.294][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-18 16:02:14.295][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-18 16:02:14.296][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-18 16:02:14.298][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-18 16:02:14.299][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-18 16:02:14.300][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-18 16:02:14.301][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-18 16:02:14.302][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-18 16:02:14.303][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-18 16:02:14.305][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-18 16:02:14.306][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-18 16:02:14.311][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-18 16:02:14.313][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-18 16:02:14.314][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-18 16:02:14.315][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-18 16:02:14.316][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-18 16:02:14.317][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-18 16:02:14.318][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-18 16:02:14.319][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-18 16:02:14.320][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-18 16:02:14.321][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-18 16:02:14.323][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-18 16:02:14.324][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-18 16:02:14.325][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-18 16:02:14.326][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-18 16:02:14.327][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-18 16:02:14.328][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-18 16:02:14.329][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-18 16:02:14.330][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-18 16:02:14.331][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-18 16:02:14.333][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-18 16:02:14.334][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-18 16:02:14.335][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-18 16:02:14.336][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-18 16:02:14.337][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-18 16:02:14.338][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-18 16:02:14.339][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-18 16:02:14.341][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-18 16:02:14.342][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-18 16:02:14.343][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-18 16:02:14.344][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-18 16:02:14.345][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-18 16:02:14.346][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-18 16:02:14.347][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-18 16:02:14.348][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-18 16:02:14.349][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-18 16:02:14.351][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-18 16:02:14.352][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-18 16:02:14.353][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-18 16:02:14.354][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-18 16:02:14.355][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-18 16:02:14.356][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-18 16:02:14.357][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-18 16:02:14.358][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-18 16:02:14.359][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-18 16:02:14.360][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-18 16:02:14.361][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-18 16:02:14.362][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-18 16:02:14.364][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-18 16:02:14.365][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-18 16:02:14.366][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-18 16:02:14.367][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-18 16:02:14.368][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-18 16:02:14.369][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-18 16:02:14.370][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-18 16:02:14.371][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-18 16:02:14.372][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-18 16:02:14.374][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-18 16:02:14.375][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-18 16:02:14.376][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-18 16:02:14.377][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-18 16:02:14.378][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-18 16:02:14.379][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-18 16:02:14.380][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-18 16:02:14.381][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-18 16:02:14.383][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-18 16:02:14.384][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-18 16:02:14.385][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-18 16:02:14.386][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-18 16:02:14.387][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-18 16:02:14.388][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-18 16:02:14.389][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-18 16:02:14.391][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-05-18 16:02:14.392][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-18 16:02:14.392][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.394][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.396][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:14.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:14.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.401][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:14.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:14.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:14.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:14.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:14.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:14.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.416][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:14.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:14.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.421][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:14.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:14.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.426][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:14.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:14.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.431][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:14.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:14.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.436][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:14.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:14.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.441][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:14.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:14.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.446][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:14.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:14.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:14.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:14.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:14.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:14.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.461][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:14.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:14.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:14.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:14.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:14.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:14.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:14.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:14.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:14.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:14.482][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-05-18 16:02:14.483][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-05-18 16:02:14.485][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.486][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-05-18 16:02:14.487][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.487][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:02:14.488][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.489][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:02:14.490][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.490][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:02:14.491][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-05-18 16:02:14.492][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:02:14.493][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.493][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-05-18 16:02:14.494][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:02:14.495][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-05-18 16:02:14.495][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-05-18 16:02:14.496][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:14.497][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:14.497][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-18 16:02:14.498][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:14.499][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:14.500][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:02:14.501][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:14.501][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:14.502][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:02:14.503][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-18 16:02:14.503][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-05-18 16:02:14.504][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:02:14.504][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:02:14.505][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.506][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:14.507][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-05-18 16:02:14.508][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.509][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-05-18 16:02:14.510][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.511][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:02:14.512][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.512][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:02:14.513][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.514][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:02:14.515][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-18 16:02:14.515][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:02:14.516][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.517][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-05-18 16:02:14.518][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:02:14.519][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-05-18 16:02:14.519][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-05-18 16:02:14.519][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-05-18 16:02:14.519][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-05-18 16:02:14.519][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-05-18 16:02:14.519][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-05-18 16:02:14.519][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:14.520][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:02:14.521][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-18 16:02:14.522][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:14.522][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:14.523][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:02:14.524][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:14.525][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:14.526][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:02:14.526][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:02:14.526][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-18 16:02:14.527][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:02:14.528][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:02:14.529][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.530][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:14.531][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-05-18 16:02:14.532][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:14.533][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-05-18 16:02:14.534][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.535][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:02:14.536][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.536][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:02:14.537][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.538][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:02:14.539][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-18 16:02:14.540][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:02:14.540][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.541][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-05-18 16:02:14.542][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:02:14.543][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-05-18 16:02:14.543][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:02:14.543][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:02:14.543][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:02:14.543][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:02:14.543][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:02:14.543][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:02:14.543][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:02:14.543][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:02:14.543][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:02:14.543][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-05-18 16:02:14.543][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:02:14.543][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:02:14.543][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:02:14.544][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:14.544][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:02:14.544][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-18 16:02:14.544][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-18 16:02:14.545][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-05-18 16:02:14.546][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:14.547][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:14.548][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:02:14.548][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:14.549][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:14.550][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:02:14.551][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:02:14.551][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-18 16:02:14.551][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-05-18 16:02:14.551][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:02:14.552][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:02:14.553][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.554][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-18 16:02:14.555][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-05-18 16:02:14.556][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.557][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-05-18 16:02:14.558][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.559][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:02:14.559][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.560][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:02:14.561][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.562][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:02:14.563][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-18 16:02:14.563][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:02:14.564][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.565][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-05-18 16:02:14.566][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:02:14.567][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-05-18 16:02:14.567][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-05-18 16:02:14.568][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:14.568][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:14.569][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-05-18 16:02:14.570][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:14.571][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:14.572][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:02:14.572][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:14.573][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:14.574][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:02:14.575][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:02:14.575][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-18 16:02:14.575][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-05-18 16:02:14.576][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:02:14.576][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:02:14.577][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:14.578][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-18 16:02:14.579][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-05-18 16:02:14.580][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-18 16:02:14.581][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-18 16:02:14.583][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-05-18 16:02:14.584][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-18 16:02:14.585][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-05-18 16:02:14.605][super$initialize] Initialize connector ncbi.pubchem.comp.
biodb.DEBUG[2024-05-18 16:02:14.606][super$initialize] Register connector ncbi.pubchem.comp with the request scheduler
biodb.DEBUG[2024-05-18 16:02:14.607][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.comp.
biodb.DEBUG[2024-05-18 16:02:14.608][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-05-18 16:02:14.609][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-05-18 16:02:14.609][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-05-18 16:02:14.611][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-05-18 16:02:14.612][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-05-18 16:02:14.612][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-05-18 16:02:14.613][rule$addConnector] Connector "ncbi.pubchem.comp" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-18 16:02:14.618][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.comp for database class ncbi.pubchem.comp .
biodb.INFO [2024-05-18 16:02:14.621][biodb::testThat]
biodb.INFO [2024-05-18 16:02:14.622][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-05-18 16:02:14.623][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:14.623][biodb::testThat]
biodb.TRACE[2024-05-18 16:02:14.625][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-2-content.xml".
biodb.DEBUG[2024-05-18 16:02:14.626][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:02:14.629][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:02:14.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:14.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:14.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:14.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:14.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:14.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:14.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:14.643][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:14.644][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:14.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.645][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:14.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:14.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.649][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:14.650][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:14.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.652][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:14.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:14.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.656][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:14.657][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:14.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.658][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.659][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:14.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:14.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.662][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:14.663][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:14.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.665][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:14.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:14.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.669][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:14.670][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:14.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.671][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:14.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:14.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.675][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:14.676][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:14.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.678][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:14.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:14.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.682][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:14.683][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:14.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.685][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.686][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:14.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:14.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.689][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:14.690][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:14.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.691][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.692][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:14.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:14.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.696][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:14.696][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:14.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.698][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:14.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:14.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.702][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:14.703][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:14.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.704][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:14.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:14.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.709][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:14.710][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:14.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.711][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.712][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:14.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:14.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.716][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:14.716][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:14.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.718][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:14.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:14.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.722][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:14.723][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:14.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.725][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.726][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:14.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:14.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.729][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:14.730][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:14.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.731][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.732][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:14.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:14.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.736][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:14.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:14.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:14.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:14.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:14.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:14.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.745][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:14.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:14.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:14.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:14.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:14.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:14.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.755][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:14.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:14.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:14.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:14.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:14.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:14.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.765][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:14.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:14.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:14.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:14.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:14.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:14.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.774][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:14.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:14.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:14.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:14.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.781][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:14.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:14.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.784][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:14.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:14.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.787][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:14.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:14.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:14.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:14.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:14.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:14.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.797][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:14.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:14.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:14.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:14.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:14.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:14.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:14.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:14.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:14.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:14.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:14.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:14.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:14.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:14.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:14.819][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2.
biodb.TRACE[2024-05-18 16:02:14.821][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:14.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:14.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.824][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:14.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:14.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.827][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:14.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:14.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.831][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:02:14.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:02:14.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.834][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:02:14.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:02:14.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.837][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:02:14.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:02:14.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.840][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:02:14.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:02:14.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:14.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:14.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:14.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:14.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:14.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:14.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:14.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:14.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:14.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:14.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:14.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:14.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:14.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:14.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:14.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:14.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.881][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:14.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:14.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.884][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:14.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:14.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:14.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:14.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:14.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:14.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:14.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:14.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:14.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:14.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.913][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:14.914][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:14.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.915][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:14.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:14.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.926][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:14.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:14.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:14.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:14.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:14.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:14.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.936][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:14.937][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:14.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.939][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.940][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:14.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:14.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:14.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:14.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:14.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:14.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:14.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:14.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.960][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:14.961][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:14.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.962][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:14.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:14.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.974][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:14.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:14.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.977][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:14.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:14.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:14.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:14.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.983][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:14.984][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:14.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.986][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.987][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:14.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:14.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:14.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:14.997][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:14.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:14.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.000][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:15.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:15.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.004][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:15.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:15.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.007][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:15.008][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:15.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.009][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.010][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:15.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:15.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.021][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:15.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:15.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.024][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:15.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:15.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.027][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:15.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:15.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.031][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:15.032][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:15.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.033][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.034][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:15.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:15.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.044][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:15.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:15.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.048][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:15.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:15.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.051][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:15.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:15.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.054][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:15.055][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:15.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.057][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.058][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:15.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:15.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.079][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.080][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.081][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.103][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.104][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.106][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.127][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.128][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.129][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.151][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.152][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.153][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.175][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.176][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.178][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.189][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:15.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:15.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.193][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:15.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:15.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.196][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:15.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:15.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.200][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:15.200][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:15.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.202][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.203][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:15.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:15.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:15.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:15.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:15.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:15.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:15.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:15.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.230][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:15.230][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:15.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.232][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:15.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:15.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:15.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:15.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:15.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:15.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:15.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:15.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.254][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:15.255][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:15.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.256][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.257][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:15.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:15.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.268][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:15.269][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:15.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.270][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.275][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.275][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.277][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.281][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.282][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.284][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.288][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.289][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.291][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.295][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.296][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.298][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.302][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.303][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.305][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.309][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:15.310][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:15.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.312][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.317][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:15.318][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:15.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.319][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.324][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:15.325][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:15.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.326][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.331][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:15.332][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:15.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.334][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.338][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:15.339][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:15.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.341][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.345][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:15.346][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:15.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.348][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.353][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:15.353][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:15.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.355][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.360][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:15.361][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:15.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.362][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.367][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:15.368][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:15.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.369][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.384][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-65124-content.xml".
biodb.DEBUG[2024-05-18 16:02:15.385][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:02:15.386][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:02:15.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:15.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:15.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:15.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:15.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:15.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:15.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:15.399][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:15.399][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:15.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.401][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:15.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:15.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.405][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.406][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.408][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.412][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.413][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.415][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.419][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.420][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.422][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.426][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.427][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.429][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.433][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.434][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.435][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.440][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:15.441][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:15.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.442][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.443][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:15.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:15.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.447][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:15.448][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:15.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.449][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.450][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:15.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:15.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.453][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:15.454][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:15.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.455][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:15.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:15.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.460][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:15.461][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:15.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.462][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:15.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:15.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.467][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:15.468][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:15.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.469][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.470][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:15.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:15.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.474][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:15.475][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:15.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.476][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:15.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:15.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.481][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:15.482][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:15.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.483][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:15.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:15.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.488][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:15.489][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:15.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.490][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.491][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:15.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:15.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.495][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:15.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.505][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:15.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.514][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:15.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.529][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:15.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.539][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:15.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.548][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:15.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:15.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:15.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:15.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:15.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:15.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:15.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:15.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.561][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:15.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:15.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:15.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:15.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:15.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:15.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:15.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:15.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:15.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:15.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:15.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:15.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:15.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:15.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:15.583][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 65124.
biodb.TRACE[2024-05-18 16:02:15.585][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:15.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:15.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.588][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:15.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:15.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:15.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:15.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.595][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:02:15.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:02:15.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.598][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:02:15.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:02:15.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.601][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:02:15.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:02:15.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.604][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:02:15.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:02:15.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:15.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:15.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.616][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:15.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:15.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:15.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:15.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:15.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:15.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:15.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:15.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:15.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:15.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:15.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:15.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:15.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:15.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:15.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:15.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:15.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:15.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.650][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:15.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:15.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:15.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:15.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:15.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:15.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:15.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:15.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.669][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:15.670][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:15.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.671][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:15.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:15.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:15.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:15.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:15.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:15.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:15.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:15.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.693][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:15.693][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:15.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.695][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:15.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:15.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:15.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:15.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:15.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:15.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:15.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:15.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.717][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:15.717][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:15.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.719][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:15.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:15.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.730][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:15.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:15.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.734][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:15.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:15.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.737][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:15.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:15.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.740][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:15.741][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:15.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.743][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.743][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:15.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:15.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.754][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:15.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:15.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.757][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:15.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:15.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.761][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:15.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:15.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.764][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:15.765][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:15.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.766][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.767][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:15.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:15.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.778][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:15.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:15.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.781][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:15.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:15.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:15.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:15.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.788][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:15.789][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:15.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.791][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.791][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:15.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:15.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.802][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:15.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:15.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.805][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:15.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:15.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.809][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:15.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:15.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.812][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:15.813][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:15.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.814][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.821][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:15.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:15.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:15.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:15.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:15.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:15.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:15.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:15.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.841][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:15.841][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:15.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.843][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:15.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:15.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:15.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:15.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:15.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:15.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:15.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:15.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.863][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:15.864][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:15.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.866][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:15.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:15.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.887][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.888][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.890][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:15.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.911][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.912][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.914][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:15.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.935][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.936][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.938][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.938][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:15.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.959][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.960][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.962][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:15.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.983][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.984][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.986][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:15.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:15.997][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:15.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:15.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:15.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.000][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:16.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:16.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.003][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:16.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:16.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.006][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:16.007][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:16.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.008][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.009][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:16.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:16.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.020][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:16.020][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:16.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.022][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.026][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:16.027][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:16.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.029][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.034][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:16.034][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:16.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.036][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.040][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:16.041][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:16.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.043][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.047][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:16.048][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:16.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.050][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.055][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:16.055][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:16.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.057][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.062][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:16.063][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:16.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.064][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.068][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:16.069][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:16.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.071][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.075][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:16.076][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:16.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.078][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.082][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:16.083][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:16.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.085][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.089][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:16.090][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:16.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.092][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.096][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:16.097][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:16.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.098][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.103][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:16.104][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:16.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.105][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.110][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:16.111][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:16.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.112][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.116][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:16.117][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:16.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.119][ef$get] fields variable is a list.
biodb.INFO [2024-05-18 16:02:16.126][biodb::testThat]
biodb.INFO [2024-05-18 16:02:16.127][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-05-18 16:02:16.128][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:16.128][biodb::testThat]
biodb.DEBUG[2024-05-18 16:02:16.136][private$loadEntries] Creating entries from ids [2]: "2, 65124".
biodb.DEBUG[2024-05-18 16:02:16.137][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-05-18 16:02:16.139][cch$loadFileContent] Trying to load 2 files from cache: [2]: "2, 65124".
biodb.TRACE[2024-05-18 16:02:16.141][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-05-18 16:02:16.143][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/65124.xml".
biodb.DEBUG[2024-05-18 16:02:16.144][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:02:16.145][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-05-18 16:02:16.146][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:02:16.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:16.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:16.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:16.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:16.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:16.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:16.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:16.158][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:16.159][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:16.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.160][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:16.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:16.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.165][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:16.166][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:16.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.167][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:16.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:16.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.172][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:16.173][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:16.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.174][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:16.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:16.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.179][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:16.180][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:16.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.181][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:16.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:16.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.186][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:16.187][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:16.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.188][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:16.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:16.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.193][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:16.193][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:16.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.195][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:16.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:16.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.200][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:16.201][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:16.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.202][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.203][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:16.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:16.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.207][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:16.208][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:16.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.209][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.210][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:16.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:16.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.213][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:16.214][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:16.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.216][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:16.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:16.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.220][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:16.221][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:16.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.223][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:16.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:16.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.227][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:16.228][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:16.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.229][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.230][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:16.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:16.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.233][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:16.234][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:16.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.236][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:16.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:16.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.240][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:16.241][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:16.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.243][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:16.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:16.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.247][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:16.248][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:16.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.249][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.250][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:16.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:16.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.253][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:16.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:16.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:16.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:16.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:16.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:16.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.263][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:16.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:16.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:16.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:16.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:16.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:16.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.273][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:16.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:16.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:16.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:16.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:16.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:16.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.282][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:16.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:16.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:16.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:16.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:16.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:16.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.292][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:16.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:16.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:16.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:16.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:16.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:16.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.301][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:16.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:16.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.304][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:16.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:16.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:16.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:16.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:16.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:16.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:16.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:16.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:16.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:16.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:16.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:16.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:16.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:16.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:16.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:16.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:16.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:16.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:16.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:16.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:16.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:16.336][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:16.337][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:16.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.338][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:16.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:16.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.343][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:16.344][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:16.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.345][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:16.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:16.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.349][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:16.350][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:16.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.351][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:16.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:16.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.355][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:16.356][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:16.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.358][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:16.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:16.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.362][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:16.362][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:16.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.364][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:16.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:16.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.368][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:16.369][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:16.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.370][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:16.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:16.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.374][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:16.375][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:16.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.377][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.378][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:16.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:16.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.381][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:16.382][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:16.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.383][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.384][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:16.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:16.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.387][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:16.388][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:16.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.389][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:16.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:16.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.394][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:16.394][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:16.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.396][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:16.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:16.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.400][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:16.401][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:16.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.402][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.403][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:16.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:16.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.406][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:16.407][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:16.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.409][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:16.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:16.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.413][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:16.414][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:16.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.415][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.416][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:16.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:16.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.424][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:16.425][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:16.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.426][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.427][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:16.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:16.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.430][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:16.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:16.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:16.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:16.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:16.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:16.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.440][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:16.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:16.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:16.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:16.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:16.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:16.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.449][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:16.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:16.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:16.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:16.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:16.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:16.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.458][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:16.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:16.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:16.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:16.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:16.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:16.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.467][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:16.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:16.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:16.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:16.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:16.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:16.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.477][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:16.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:16.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.480][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:16.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:16.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:16.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:16.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:16.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:16.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:16.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:16.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:16.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:16.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:16.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:16.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:16.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:16.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:16.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:16.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:16.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:16.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:16.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:16.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:16.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:16.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:16.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:16.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:16.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:16.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:16.524][self$createEntryFromContent] Accession numbers: 2, 65124.
biodb.TRACE[2024-05-18 16:02:16.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-18 16:02:16.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-18 16:02:16.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:02:16.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:02:16.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:02:16.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:02:16.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-18 16:02:16.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-18 16:02:16.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:02:16.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:02:16.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:02:16.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:02:16.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-18 16:02:16.555][biodb::testThat]
biodb.INFO [2024-05-18 16:02:16.556][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-05-18 16:02:16.557][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:16.558][biodb::testThat]
biodb.TRACE[2024-05-18 16:02:16.560][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:16.561][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:16.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.563][ef$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:16.564][function(conn, opt)] Testing searchForEntries() with entry "2" and field "name".
biodb.TRACE[2024-05-18 16:02:16.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:16.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:16.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.580][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:16.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:16.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.583][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:16.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:16.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:16.589][function(conn, opt)] With value "(2-acetyloxy-3-carboxypropyl)-trimethylazanium".
biodb.DEBUG[2024-05-18 16:02:16.594][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-05-18 16:02:16.610][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:16.612][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-05-18 16:02:16.613][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:16.614][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2024-05-18 16:02:16.615][function(conn, opt)] With found IDs [5]: "87229113, 25217148, 450343, 450342, 2".
biodb.TRACE[2024-05-18 16:02:16.628][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:16.629][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:16.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.630][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.631][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:16.632][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:16.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.633][ef$get] fields variable is a list.
biodb.INFO [2024-05-18 16:02:16.637][biodb::testThat]
biodb.INFO [2024-05-18 16:02:16.638][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-05-18 16:02:16.639][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:16.640][biodb::testThat]
biodb.TRACE[2024-05-18 16:02:16.650][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:16.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:16.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.653][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:16.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:16.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.656][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:16.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:16.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:16.682][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-05-18 16:02:16.684][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:16.686][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-05-18 16:02:16.687][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:16.688][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.INFO [2024-05-18 16:02:16.703][biodb::testThat]
biodb.INFO [2024-05-18 16:02:16.704][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-05-18 16:02:16.705][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:16.705][biodb::testThat]
biodb.TRACE[2024-05-18 16:02:16.714][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:16.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:16.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.722][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:16.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:16.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:16.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:16.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.729][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:02:16.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:02:16.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.732][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:02:16.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:02:16.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.735][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:02:16.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:02:16.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.738][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:02:16.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:02:16.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.742][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:16.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:16.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.745][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:16.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:16.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:16.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:16.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.751][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:02:16.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:02:16.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.754][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:02:16.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:02:16.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.757][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:02:16.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:02:16.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:16.760][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:02:16.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:02:16.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:16.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-18 16:02:16.768][biodb::testThat]
biodb.INFO [2024-05-18 16:02:16.769][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-05-18 16:02:16.770][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:16.771][biodb::testThat]
biodb.INFO [2024-05-18 16:02:16.778][biodb::testThat]
biodb.INFO [2024-05-18 16:02:16.779][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-05-18 16:02:16.780][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:16.780][biodb::testThat]
biodb.INFO [2024-05-18 16:02:16.788][biodb::testThat]
biodb.INFO [2024-05-18 16:02:16.788][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-05-18 16:02:16.789][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:16.790][biodb::testThat]
biodb.DEBUG[2024-05-18 16:02:16.793][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/compound/2".
biodb.DEBUG[2024-05-18 16:02:17.016][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/compound/2.
biodb.INFO [2024-05-18 16:02:17.205][biodb::testThat]
biodb.INFO [2024-05-18 16:02:17.206][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-05-18 16:02:17.207][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:17.208][biodb::testThat]
biodb.DEBUG[2024-05-18 16:02:17.366][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?cid=2&t=l.
biodb.TRACE[2024-05-18 16:02:17.454][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:17.455][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:17.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:17.457][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:17.458][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:17.458][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:17.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:17.460][ef$get] fields variable is a list.
biodb.INFO [2024-05-18 16:02:17.461][biodb::testThat]
biodb.INFO [2024-05-18 16:02:17.462][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2024-05-18 16:02:17.463][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:17.464][biodb::testThat]
biodb.TRACE[2024-05-18 16:02:17.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:17.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:17.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:17.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:17.477][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:17.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:17.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:17.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:17.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:17.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:17.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:17.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:17.560][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-05-18 16:02:17.562][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:17.564][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-05-18 16:02:17.565][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:17.566][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2024-05-18 16:02:17.632][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-05-18 16:02:17.634][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:17.635][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-05-18 16:02:17.636][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:17.637][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.TRACE[2024-05-18 16:02:17.650][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-18 16:02:17.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-18 16:02:17.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:17.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:17.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:17.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:17.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:17.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:17.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:17.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:17.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:17.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:17.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:17.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:17.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:17.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:17.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:17.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:17.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:17.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:17.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:17.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:17.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:17.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:17.681][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:17.683][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:17.684][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-05-18 16:02:17.685][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:17.687][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-05-18 16:02:17.700][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-05-18 16:02:17.702][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:17.704][cch$loadFileContent] Trying to load 1 files from cache: [1]: "43af01c58cfaf2fe3448c11004a21986".
biodb.TRACE[2024-05-18 16:02:17.705][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:17.707][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.content".
biodb.DEBUG[2024-05-18 16:02:17.938][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-05-18 16:02:17.941][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:17.943][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5a651e56a091cb06291b388106735d55".
biodb.TRACE[2024-05-18 16:02:17.944][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:17.945][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.content".
biodb.DEBUG[2024-05-18 16:02:17.966][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.27[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-05-18 16:02:17.969][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:17.970][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d3d0da2755d093596dae584b7698bc73".
biodb.TRACE[2024-05-18 16:02:17.971][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:17.973][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.content".
biodb.TRACE[2024-05-18 16:02:17.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:17.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:17.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:17.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:17.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:17.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:17.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:17.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:17.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:17.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:17.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:17.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:17.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:18.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:18.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:18.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:18.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:18.010][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:18.013][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:18.014][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1384af38a786fc6768cd7f1e796d96ab".
biodb.TRACE[2024-05-18 16:02:18.015][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:18.016][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.content".
biodb.DEBUG[2024-05-18 16:02:18.030][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-05-18 16:02:18.033][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:18.034][cch$loadFileContent] Trying to load 1 files from cache: [1]: "983d3a3af3901d23b5d919d379c6bd32".
biodb.TRACE[2024-05-18 16:02:18.035][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:18.037][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.content".
biodb.DEBUG[2024-05-18 16:02:18.052][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-05-18 16:02:18.055][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:18.056][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9a9be2efcff8c77fef3b8a87f25b444".
biodb.TRACE[2024-05-18 16:02:18.057][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:18.059][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.content".
biodb.DEBUG[2024-05-18 16:02:18.079][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358309[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-05-18 16:02:18.082][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:18.083][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6d4e46c6f0a021fc6e92911d60537192".
biodb.TRACE[2024-05-18 16:02:18.084][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:18.086][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.content".
biodb.TRACE[2024-05-18 16:02:18.114][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-18 16:02:18.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-18 16:02:18.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-18 16:02:18.124][biodb::testThat]
biodb.INFO [2024-05-18 16:02:18.125][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-05-18 16:02:18.126][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:18.126][biodb::testThat]
biodb.TRACE[2024-05-18 16:02:18.129][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-18 16:02:18.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-18 16:02:18.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.132][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-18 16:02:18.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-18 16:02:18.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:18.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:18.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:18.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:18.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:18.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:18.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:18.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:18.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:18.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:18.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:18.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:18.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:18.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:18.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:18.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:18.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:18.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:18.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:18.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:18.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:18.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:18.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:18.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:18.177][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:18.179][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:18.180][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-05-18 16:02:18.181][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:18.182][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-05-18 16:02:18.183][private$loadEntries] Creating entries from ids [3]: "171380427, 171378033, 171375796".
biodb.DEBUG[2024-05-18 16:02:18.184][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-05-18 16:02:18.186][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171380427, 171378033, 171375796".
biodb.TRACE[2024-05-18 16:02:18.187][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-05-18 16:02:18.189][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171380427.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171378033.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171375796.xml".
biodb.DEBUG[2024-05-18 16:02:18.190][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:02:18.191][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-05-18 16:02:18.192][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:02:18.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:18.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:18.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:18.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:18.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:18.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:18.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:18.205][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:18.206][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:18.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.207][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:18.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:18.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.212][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:18.212][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:18.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.214][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:18.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:18.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.219][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:18.219][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:18.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.221][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:18.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:18.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.225][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:18.226][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:18.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.227][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:18.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:18.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.231][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:18.232][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:18.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.234][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:18.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:18.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.238][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:18.239][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:18.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.240][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:18.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:18.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.244][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:18.245][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:18.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.246][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.247][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:18.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:18.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.251][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:18.252][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:18.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.253][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.254][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:18.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:18.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.257][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:18.258][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:18.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.259][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.260][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:18.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:18.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.264][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:18.265][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:18.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.266][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:18.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:18.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.270][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:18.271][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:18.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.273][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.274][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:18.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:18.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.277][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:18.278][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:18.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.279][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:18.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:18.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.283][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:18.284][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:18.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.286][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.287][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:18.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:18.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.290][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:18.291][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:18.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.292][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.294][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:18.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:18.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.297][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:18.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:18.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:18.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:18.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:18.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:18.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.307][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:18.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:18.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:18.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:18.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:18.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:18.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.317][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:18.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:18.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:18.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:18.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:18.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:18.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.327][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:18.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:18.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:18.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:18.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:18.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:18.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.337][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:18.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:18.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:18.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:18.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:18.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:18.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.346][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:18.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:18.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.353][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:18.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:18.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:18.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:18.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:18.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:18.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:18.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:18.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:18.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:18.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:18.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:18.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:18.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:18.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:18.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:18.389][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:18.390][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:18.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.391][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:18.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:18.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.395][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:18.396][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:18.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.398][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:18.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:18.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.402][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:18.403][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:18.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.404][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:18.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:18.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.408][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:18.409][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:18.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.411][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:18.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:18.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.415][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:18.416][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:18.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.418][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:18.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:18.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.422][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:18.423][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:18.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.425][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:18.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:18.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.429][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:18.430][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:18.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.431][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.432][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:18.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:18.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.436][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:18.437][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:18.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.438][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.439][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:18.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:18.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.443][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:18.444][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:18.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.445][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:18.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:18.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.449][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:18.450][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:18.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.452][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.453][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:18.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:18.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.456][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:18.457][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:18.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.458][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.459][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:18.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:18.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.463][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:18.464][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:18.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.465][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:18.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:18.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.470][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:18.470][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:18.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.472][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.473][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:18.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:18.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.476][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:18.477][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:18.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.479][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.480][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:18.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:18.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.483][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:18.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:18.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:18.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:18.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:18.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:18.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.493][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:18.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:18.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:18.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:18.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:18.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:18.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.502][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:18.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:18.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:18.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:18.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:18.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:18.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.511][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:18.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:18.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:18.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:18.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:18.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:18.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.521][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:18.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:18.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:18.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:18.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:18.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:18.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.530][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:18.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:18.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.536][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:18.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:18.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:18.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:18.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:18.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:18.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:18.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:18.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:18.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:18.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:18.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:18.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:18.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:18.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:18.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:18.566][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:18.567][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:18.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.568][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:18.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:18.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.572][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:18.573][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:18.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.575][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.576][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:18.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:18.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.579][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:18.580][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:18.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.582][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.583][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:18.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:18.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.586][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:18.587][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:18.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.589][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:18.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:18.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.593][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:18.594][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:18.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.595][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:18.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:18.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.600][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:18.601][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:18.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.602][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:18.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:18.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.607][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:18.607][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:18.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.609][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.610][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:18.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:18.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.613][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:18.614][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:18.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.616][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.617][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:18.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:18.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.620][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:18.621][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:18.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.622][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:18.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:18.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.627][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:18.627][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:18.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.629][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:18.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:18.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.633][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:18.634][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:18.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.636][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.637][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:18.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:18.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.640][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:18.641][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:18.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.643][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:18.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:18.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.653][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:18.654][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:18.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.655][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.656][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:18.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:18.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.660][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:18.660][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:18.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.662][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.663][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:18.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:18.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.666][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:18.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:18.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.669][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:18.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:18.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:18.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:18.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.675][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:18.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:18.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:18.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:18.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:18.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:18.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.685][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:18.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:18.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:18.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:18.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:18.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:18.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.695][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:18.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:18.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:18.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:18.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:18.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:18.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.705][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:18.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:18.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:18.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:18.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:18.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:18.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.714][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:18.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:18.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.721][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:18.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:18.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.727][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:18.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:18.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:18.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:18.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:18.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:18.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:18.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:18.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:18.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:18.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:18.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:18.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:18.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:18.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:18.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:18.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:18.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:18.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:18.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:18.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:18.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:18.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:18.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:18.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:18.769][self$createEntryFromContent] Accession numbers: 171380427, 171378033, 171375796.
biodb.DEBUG[2024-05-18 16:02:18.770][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:18.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:18.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:18.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:18.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:18.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:18.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:18.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:18.780][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.787][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:18.788][private$selectFields]
biodb.TRACE[2024-05-18 16:02:18.789][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:18.789][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:18.790][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:18.791][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.792][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.793][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.794][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.795][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.797][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.798][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:18.799][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:18.800][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.801][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.802][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.803][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:18.804][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.811][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.821][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380427].
biodb.DEBUG[2024-05-18 16:02:18.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:18.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:18.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:18.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:18.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:18.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:18.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:18.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.838][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:18.839][private$selectFields]
biodb.TRACE[2024-05-18 16:02:18.840][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:18.841][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:18.841][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:18.842][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.843][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.844][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.845][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.846][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.848][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.848][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:18.849][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:18.850][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.851][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.852][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.853][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:18.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.864][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-05-18 16:02:18.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:18.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:18.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:18.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:18.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:18.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:18.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:18.875][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.881][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:18.882][private$selectFields]
biodb.TRACE[2024-05-18 16:02:18.883][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:18.884][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:18.885][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:18.885][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.886][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.888][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.888][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.889][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.891][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.891][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:18.892][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:18.893][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.894][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.895][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.896][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:18.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.900][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:18.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:18.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:18.906][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171375796].
biodb.DEBUG[2024-05-18 16:02:18.907][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:18.913][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:18.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:18.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:18.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:18.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:18.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:18.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:18.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:18.929][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:18.931][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:02:18.932][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:02:18.933][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-05-18 16:02:19.108][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:02:19.109][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:02:19.110][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:02:19.111][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:02:19.206][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:02:19.208][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content"
biodb.TRACE[2024-05-18 16:02:19.211][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.request"
biodb.DEBUG[2024-05-18 16:02:19.213][private$loadEntries] Creating entries from ids [3]: "171368245, 171367693, 171367665".
biodb.DEBUG[2024-05-18 16:02:19.214][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-05-18 16:02:19.215][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171368245, 171367693, 171367665".
biodb.TRACE[2024-05-18 16:02:19.216][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-05-18 16:02:19.217][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:02:19.218][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:02:19.219][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:02:19.220][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:02:19.221][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:02:19.221][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-05-18 16:02:19.223][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171368245,171367693,171367665/XML".
biodb.DEBUG[2024-05-18 16:02:19.225][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:02:19.226][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:02:19.227][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171368245,171367693,171367665/XML".
biodb.TRACE[2024-05-18 16:02:19.405][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171368245,171367693,171367665/XML).
biodb.TRACE[2024-05-18 16:02:19.663][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171368245.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171367693.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171367665.xml"
biodb.DEBUG[2024-05-18 16:02:19.666][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:02:19.667][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-05-18 16:02:19.668][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:02:19.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:19.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:19.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:19.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:19.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:19.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:19.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:19.680][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:19.681][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:19.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.683][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:19.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:19.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.687][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:19.688][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:19.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.689][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:19.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:19.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.694][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:19.694][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:19.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.696][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:19.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:19.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.700][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:19.701][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:19.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.703][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:19.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:19.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.707][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:19.708][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:19.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.709][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:19.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:19.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.714][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:19.714][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:19.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.716][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:19.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:19.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.720][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:19.721][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:19.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.722][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.723][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:19.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:19.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.726][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:19.727][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:19.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.729][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.730][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:19.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:19.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.733][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:19.734][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:19.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.735][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:19.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:19.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.739][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:19.740][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:19.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.741][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:19.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:19.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.745][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:19.746][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:19.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.748][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.749][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:19.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:19.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.752][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:19.752][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:19.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.754][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:19.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:19.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.758][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:19.759][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:19.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.760][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.761][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:19.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:19.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.765][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:19.765][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:19.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.767][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.768][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:19.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:19.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.771][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:19.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:19.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:19.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:19.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:19.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:19.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.781][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:19.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:19.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.784][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:19.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:19.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:19.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:19.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.790][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:19.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:19.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:19.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:19.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.796][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:19.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:19.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.799][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:19.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:19.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:19.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:19.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:19.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:19.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.808][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:19.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:19.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:19.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:19.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:19.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:19.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.817][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:19.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:19.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.821][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:19.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:19.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:19.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:19.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:19.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:19.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.830][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:19.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:19.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:19.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:19.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:19.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:19.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:19.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:19.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:19.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:19.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:19.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:19.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:19.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:19.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:19.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:19.853][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:19.854][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:19.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.856][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:19.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:19.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.860][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:19.861][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:19.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.862][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:19.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:19.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.866][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:19.867][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:19.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.869][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:19.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:19.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.882][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:19.883][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:19.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.885][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:19.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:19.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.889][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:19.890][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:19.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.891][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:19.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:19.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.896][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:19.897][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:19.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.898][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:19.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:19.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.902][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:19.903][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:19.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.905][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.906][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:19.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:19.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.909][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:19.909][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:19.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.911][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.912][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:19.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:19.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.915][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:19.916][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:19.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.918][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:19.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:19.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.922][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:19.923][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:19.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.924][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:19.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:19.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.928][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:19.929][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:19.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.931][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.932][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:19.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:19.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.935][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:19.936][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:19.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.937][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:19.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:19.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.942][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:19.942][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:19.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.944][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.945][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:19.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:19.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.948][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:19.949][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:19.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.951][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.952][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:19.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:19.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.955][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:19.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:19.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:19.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:19.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:19.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:19.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.965][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:19.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:19.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:19.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:19.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:19.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:19.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.975][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:19.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:19.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:19.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:19.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:19.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:19.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.984][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:19.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:19.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:19.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:19.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:19.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:19.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.994][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:19.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:19.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:19.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:19.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:19.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:19.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.000][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.003][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:20.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:20.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.006][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.009][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:20.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:20.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:20.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:20.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:20.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:20.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:20.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:20.038][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.039][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.041][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.046][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:20.047][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:20.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.048][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:20.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:20.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.053][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.053][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.055][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.059][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:20.060][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:20.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.062][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:20.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:20.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.066][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:20.067][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:20.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.068][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:20.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:20.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.072][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:20.073][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:20.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.074][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:20.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:20.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.079][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:20.079][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:20.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.081][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.082][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:20.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:20.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.085][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:20.086][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:20.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.088][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.089][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:20.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:20.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.092][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:20.093][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:20.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.094][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:20.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:20.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.099][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:20.099][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:20.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.101][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:20.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:20.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.105][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:20.106][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:20.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.108][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.109][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:20.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:20.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.112][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:20.113][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:20.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.114][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:20.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:20.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.119][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:20.120][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:20.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.121][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.122][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:20.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:20.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.126][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:20.127][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:20.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.128][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.129][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:20.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:20.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.133][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:20.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:20.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:20.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:20.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:20.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:20.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.147][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:20.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:20.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:20.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:20.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:20.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:20.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.156][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:20.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:20.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:20.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:20.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:20.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:20.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.165][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:20.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:20.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:20.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:20.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:20.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:20.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.175][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:20.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.184][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:20.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:20.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.190][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.195][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:20.235][self$createEntryFromContent] Accession numbers: 171368245, 171367693, 171367665.
biodb.DEBUG[2024-05-18 16:02:20.253][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:20.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:20.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:20.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:20.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:20.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:20.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:20.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:20.279][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.286][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:20.287][private$selectFields]
biodb.TRACE[2024-05-18 16:02:20.287][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:20.288][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:20.289][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:20.290][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.290][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.292][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.293][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.293][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.295][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.296][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:20.297][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:20.297][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.298][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.300][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.301][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:20.301][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.311][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171368245].
biodb.DEBUG[2024-05-18 16:02:20.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:20.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:20.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:20.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:20.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:20.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:20.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:20.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.325][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.328][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:20.328][private$selectFields]
biodb.TRACE[2024-05-18 16:02:20.329][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:20.330][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:20.331][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:20.331][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.332][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.334][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.334][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.335][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.337][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.338][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:20.338][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:20.339][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.340][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.341][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.342][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:20.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.349][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.353][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171367693].
biodb.DEBUG[2024-05-18 16:02:20.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:20.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:20.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:20.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:20.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:20.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:20.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:20.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.366][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.369][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:20.370][private$selectFields]
biodb.TRACE[2024-05-18 16:02:20.371][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:20.371][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:20.372][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:20.373][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.374][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.375][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.376][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.382][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.383][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.384][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:20.385][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:20.386][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.386][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.388][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.388][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:20.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.395][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.399][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171367665].
biodb.DEBUG[2024-05-18 16:02:20.399][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:20.400][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-18 16:02:20.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:20.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:20.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:20.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:20.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:20.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:20.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:20.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:20.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:20.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:20.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:20.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:20.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:20.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:20.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:20.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:20.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:20.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:20.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:20.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:20.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:20.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:20.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:20.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:20.486][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:20.490][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:20.491][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-05-18 16:02:20.492][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:20.493][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-05-18 16:02:20.494][private$loadEntries] Creating entries from ids [2]: "171372625, 171372572".
biodb.DEBUG[2024-05-18 16:02:20.495][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-05-18 16:02:20.496][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171372625, 171372572".
biodb.TRACE[2024-05-18 16:02:20.497][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-05-18 16:02:20.499][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171372625.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171372572.xml".
biodb.DEBUG[2024-05-18 16:02:20.500][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:02:20.501][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-05-18 16:02:20.502][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:02:20.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:20.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:20.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:20.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:20.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:20.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:20.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:20.514][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.515][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.516][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.521][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:20.522][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:20.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.523][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:20.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:20.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.528][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.529][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.530][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.535][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:20.535][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:20.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.537][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:20.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:20.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.541][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:20.542][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:20.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.543][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:20.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:20.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.548][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:20.549][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:20.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.550][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:20.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:20.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.554][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:20.555][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:20.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.557][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.558][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:20.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:20.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.561][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:20.562][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:20.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.563][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.564][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:20.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:20.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.567][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:20.568][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:20.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.570][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.571][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:20.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:20.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.574][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:20.575][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:20.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.576][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:20.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:20.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.581][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:20.582][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:20.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.583][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.584][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:20.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:20.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.587][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:20.588][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:20.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.590][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:20.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:20.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.594][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:20.595][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:20.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.596][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.597][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:20.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:20.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.601][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:20.601][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:20.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.603][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.604][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:20.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:20.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.607][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:20.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:20.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:20.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:20.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:20.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:20.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.617][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:20.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:20.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:20.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:20.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:20.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:20.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.632][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:20.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:20.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:20.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:20.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:20.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:20.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.641][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:20.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:20.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:20.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:20.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:20.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:20.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.651][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:20.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.660][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:20.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:20.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:20.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:20.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:20.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:20.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:20.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:20.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:20.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:20.696][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.697][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.698][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.702][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:20.703][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:20.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.705][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:20.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:20.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.709][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.710][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.711][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.716][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:20.717][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:20.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.718][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:20.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:20.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.722][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:20.723][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:20.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.725][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:20.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:20.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.729][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:20.730][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:20.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.731][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:20.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:20.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.735][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:20.736][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:20.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.738][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.739][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:20.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:20.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.742][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:20.743][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:20.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.745][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.746][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:20.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:20.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.749][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:20.750][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:20.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.751][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:20.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:20.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.755][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:20.756][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:20.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.757][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:20.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:20.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.761][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:20.762][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:20.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.764][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.765][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:20.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:20.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.768][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:20.769][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:20.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.770][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:20.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:20.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.774][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:20.775][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:20.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.777][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.778][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:20.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:20.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.781][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:20.782][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:20.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.784][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:20.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:20.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.788][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:20.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:20.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:20.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:20.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:20.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:20.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.798][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:20.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:20.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:20.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:20.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:20.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:20.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.807][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:20.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:20.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:20.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:20.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:20.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:20.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.816][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:20.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:20.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:20.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:20.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:20.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:20.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.825][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:20.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:20.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.835][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:20.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:20.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.841][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:20.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:20.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:20.877][self$createEntryFromContent] Accession numbers: 171372625, 171372572.
biodb.DEBUG[2024-05-18 16:02:20.878][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:20.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:20.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:20.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:20.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:20.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:20.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:20.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:20.902][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.924][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:20.925][private$selectFields]
biodb.TRACE[2024-05-18 16:02:20.925][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:20.926][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:20.927][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:20.928][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.929][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.930][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.931][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.932][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.933][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.934][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:20.941][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:20.942][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.943][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.944][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.945][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:20.946][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.955][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-05-18 16:02:20.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:20.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:20.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:20.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:20.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:20.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:20.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:20.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.972][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:20.973][private$selectFields]
biodb.TRACE[2024-05-18 16:02:20.974][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:20.974][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:20.975][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:20.976][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.977][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.978][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.979][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.980][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.981][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.982][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:20.983][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:20.984][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.985][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.986][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.987][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:20.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.991][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:20.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:20.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:20.997][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372625].
biodb.DEBUG[2024-05-18 16:02:20.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:20.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:20.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:21.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:21.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:21.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:21.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:21.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:21.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:21.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:21.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:21.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.013][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:21.014][private$selectFields]
biodb.TRACE[2024-05-18 16:02:21.015][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:21.016][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:21.016][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:21.017][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:21.018][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:21.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.020][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.020][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:21.021][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:21.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.023][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.024][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:21.025][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:21.025][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:21.026][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:21.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.028][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.029][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:21.029][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:21.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:21.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:21.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:21.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.036][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:21.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:21.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.039][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372572].
biodb.DEBUG[2024-05-18 16:02:21.040][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:21.041][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:21.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:21.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:21.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:21.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:21.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:21.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:21.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:21.056][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:21.059][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:02:21.059][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:02:21.061][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-05-18 16:02:21.182][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:02:21.183][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:02:21.184][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:02:21.185][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:02:21.282][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:02:21.284][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content"
biodb.TRACE[2024-05-18 16:02:21.287][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.request"
biodb.DEBUG[2024-05-18 16:02:21.289][private$loadEntries] Creating entries from ids [3]: "171374155, 171374057, 171369134".
biodb.DEBUG[2024-05-18 16:02:21.290][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-05-18 16:02:21.291][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171374155, 171374057, 171369134".
biodb.TRACE[2024-05-18 16:02:21.292][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-05-18 16:02:21.293][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:02:21.294][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:02:21.295][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:02:21.296][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:02:21.297][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:02:21.311][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-05-18 16:02:21.313][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171374155,171374057,171369134/XML".
biodb.DEBUG[2024-05-18 16:02:21.315][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:02:21.316][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:02:21.317][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171374155,171374057,171369134/XML".
biodb.TRACE[2024-05-18 16:02:21.540][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171374155,171374057,171369134/XML).
biodb.TRACE[2024-05-18 16:02:21.846][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171374155.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171374057.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171369134.xml"
biodb.DEBUG[2024-05-18 16:02:21.848][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:02:21.849][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-05-18 16:02:21.850][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:02:21.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:21.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:21.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:21.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:21.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:21.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:21.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:21.862][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:21.863][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:21.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.864][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:21.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:21.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.878][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:21.879][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:21.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.881][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:21.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:21.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.885][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:21.886][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:21.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.887][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:21.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:21.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.892][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:21.892][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:21.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.894][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:21.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:21.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.898][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:21.899][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:21.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.900][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:21.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:21.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.905][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:21.906][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:21.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.907][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:21.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:21.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.912][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:21.913][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:21.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.914][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.915][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:21.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:21.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.919][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:21.919][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:21.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.921][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.922][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:21.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:21.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.925][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:21.926][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:21.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.928][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:21.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:21.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.932][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:21.933][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:21.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.934][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:21.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:21.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.939][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:21.940][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:21.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.941][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.942][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:21.943][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:21.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.944][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:21.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:21.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.948][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:21.949][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:21.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.951][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.952][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:21.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:21.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.955][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:21.956][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:21.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.957][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.958][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:21.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:21.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.961][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:21.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:21.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.965][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:21.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:21.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:21.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:21.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.971][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:21.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:21.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:21.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:21.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:21.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:21.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.980][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:21.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:21.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:21.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:21.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:21.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:21.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.990][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:21.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:21.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:21.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:21.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:21.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:21.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:21.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:21.999][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:22.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.008][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:22.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:22.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.012][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.021][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:22.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:22.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:22.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:22.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:22.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:22.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:22.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:22.045][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.046][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.047][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.052][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:22.053][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:22.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.054][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.055][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:22.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:22.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.059][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.059][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.061][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.065][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:22.066][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:22.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.068][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:22.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:22.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.072][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:22.073][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:22.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.075][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:22.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:22.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.079][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:22.080][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:22.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.081][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:22.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:22.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.085][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:22.087][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:22.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.088][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.089][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:22.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:22.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.093][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:22.093][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:22.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.095][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.096][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:22.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:22.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.100][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:22.100][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:22.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.102][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.103][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:22.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:22.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.106][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:22.107][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:22.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.109][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:22.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:22.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.113][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:22.114][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:22.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.116][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.117][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:22.118][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:22.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.119][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:22.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:22.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.124][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:22.124][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:22.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.126][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.127][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:22.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:22.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.130][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:22.131][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:22.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.133][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.134][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:22.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:22.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.143][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:22.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:22.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:22.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:22.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:22.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:22.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.152][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:22.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:22.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:22.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:22.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:22.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:22.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.162][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:22.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:22.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:22.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:22.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:22.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:22.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.172][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:22.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:22.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:22.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:22.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:22.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:22.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.182][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:22.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.191][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:22.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:22.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.198][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.204][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:22.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:22.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:22.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:22.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:22.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:22.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:22.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:22.228][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.229][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.230][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.235][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:22.235][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:22.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.237][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:22.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:22.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.241][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.242][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.244][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.248][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:22.249][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:22.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.250][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.252][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:22.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:22.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.255][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:22.255][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:22.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.257][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:22.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:22.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.261][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:22.262][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:22.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.263][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:22.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:22.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.268][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:22.269][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:22.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.270][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.271][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:22.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:22.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.275][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:22.276][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:22.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.277][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.278][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:22.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:22.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.281][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:22.282][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:22.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.284][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.285][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:22.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:22.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.288][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:22.289][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:22.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.290][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:22.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:22.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.295][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:22.296][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:22.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.297][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.298][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:22.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:22.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.302][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:22.302][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:22.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.304][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:22.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:22.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.308][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:22.309][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:22.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.311][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.312][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:22.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:22.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.315][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:22.316][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:22.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.317][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.318][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:22.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:22.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.321][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:22.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:22.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:22.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:22.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:22.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:22.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.331][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:22.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:22.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:22.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:22.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:22.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:22.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.340][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:22.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:22.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:22.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:22.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:22.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:22.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.349][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:22.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:22.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:22.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:22.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:22.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:22.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.359][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:22.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.369][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:22.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:22.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:22.465][self$createEntryFromContent] Accession numbers: 171374155, 171374057, 171369134.
biodb.DEBUG[2024-05-18 16:02:22.466][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:22.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:22.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:22.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:22.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:22.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:22.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:22.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:22.477][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.480][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.483][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:22.484][private$selectFields]
biodb.TRACE[2024-05-18 16:02:22.485][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:22.485][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:22.486][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:22.487][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.488][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.489][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.490][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.491][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.492][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.493][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:22.494][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:22.495][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.496][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.497][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.498][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:22.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.502][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.509][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374155].
biodb.DEBUG[2024-05-18 16:02:22.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:22.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:22.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:22.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:22.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:22.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:22.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:22.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.522][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.525][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:22.526][private$selectFields]
biodb.TRACE[2024-05-18 16:02:22.527][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:22.528][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:22.529][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:22.529][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.530][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.532][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.532][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.533][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.535][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.535][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:22.536][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:22.537][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.538][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.540][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.541][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:22.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.545][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.548][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.552][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374057].
biodb.DEBUG[2024-05-18 16:02:22.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:22.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:22.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:22.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:22.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:22.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:22.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:22.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.568][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:22.569][private$selectFields]
biodb.TRACE[2024-05-18 16:02:22.570][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:22.570][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:22.571][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:22.572][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.573][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.574][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.575][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.576][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.578][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.579][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:22.580][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:22.581][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.582][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.583][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.584][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:22.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.595][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171369134].
biodb.DEBUG[2024-05-18 16:02:22.596][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:22.597][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-18 16:02:22.604][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-18 16:02:22.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-18 16:02:22.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.608][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-18 16:02:22.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-18 16:02:22.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-18 16:02:22.615][biodb::testThat]
biodb.INFO [2024-05-18 16:02:22.615][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-05-18 16:02:22.616][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:22.617][biodb::testThat]
biodb.TRACE[2024-05-18 16:02:22.619][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-18 16:02:22.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-18 16:02:22.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.623][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-18 16:02:22.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-18 16:02:22.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:22.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:22.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:22.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:22.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:22.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:22.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:22.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:22.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:22.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:22.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:22.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:22.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:22.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:22.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:22.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:22.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:22.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:22.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:22.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:22.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:22.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:22.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:22.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:22.672][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364:204.2430636[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:22.675][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:22.676][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aa9cb23a1eb4b2596e7c242b1c35f744".
biodb.TRACE[2024-05-18 16:02:22.677][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:22.679][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.content".
biodb.DEBUG[2024-05-18 16:02:22.680][private$loadEntries] Creating entries from ids [1]: "171370721".
biodb.DEBUG[2024-05-18 16:02:22.681][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-18 16:02:22.683][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171370721".
biodb.TRACE[2024-05-18 16:02:22.684][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:22.685][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171370721.xml".
biodb.DEBUG[2024-05-18 16:02:22.686][conn$getEntryContent] 1 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:02:22.687][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:02:22.688][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:02:22.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:22.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:22.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:22.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:22.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:22.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:22.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:22.702][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.703][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.705][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.710][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:22.711][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:22.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.712][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:22.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:22.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.718][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.719][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.720][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.725][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:22.726][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:22.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.728][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:22.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:22.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.738][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:22.739][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:22.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.741][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:22.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:22.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.746][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:22.747][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:22.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.748][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:22.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:22.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.753][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:22.754][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:22.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.756][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.757][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:22.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:22.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.760][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:22.761][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:22.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.763][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.764][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:22.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:22.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.767][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:22.768][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:22.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.769][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:22.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:22.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.774][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:22.775][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:22.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.776][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:22.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:22.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.781][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:22.781][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:22.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.783][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.784][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:22.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:22.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.787][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:22.788][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:22.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.790][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:22.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:22.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.794][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:22.795][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:22.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.797][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.798][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:22.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:22.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.801][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:22.802][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:22.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.804][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.805][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:22.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:22.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.808][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:22.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:22.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:22.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:22.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:22.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:22.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.818][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:22.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:22.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:22.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:22.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:22.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:22.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.829][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:22.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:22.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:22.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:22.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:22.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:22.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.839][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:22.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:22.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:22.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:22.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:22.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:22.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.849][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:22.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:22.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.858][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:22.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:22.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.862][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.865][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.871][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:22.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:22.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:22.894][self$createEntryFromContent] Accession numbers: 171370721.
biodb.DEBUG[2024-05-18 16:02:22.895][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:22.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:22.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:22.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:22.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:22.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:22.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:22.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:22.906][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.909][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.913][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:22.913][private$selectFields]
biodb.TRACE[2024-05-18 16:02:22.914][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:22.915][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:22.916][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:22.916][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.917][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.919][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.920][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.921][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.922][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.923][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:22.924][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:22.925][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.926][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.927][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.928][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:22.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.935][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.939][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380427].
biodb.DEBUG[2024-05-18 16:02:22.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:22.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:22.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:22.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:22.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:22.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:22.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:22.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.956][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:22.957][private$selectFields]
biodb.TRACE[2024-05-18 16:02:22.957][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:22.958][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:22.959][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:22.960][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.961][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.962][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.963][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.964][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.965][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.966][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:22.967][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:22.967][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.968][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.970][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.971][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:22.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.981][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372625].
biodb.DEBUG[2024-05-18 16:02:22.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:22.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:22.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:22.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:22.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:22.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:22.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:22.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.995][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:22.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:22.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:22.999][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:23.000][private$selectFields]
biodb.TRACE[2024-05-18 16:02:23.000][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:23.001][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:23.002][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:23.003][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:23.004][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:23.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.005][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.006][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:23.007][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:23.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.009][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.009][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:23.010][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:23.011][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:23.012][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:23.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.014][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.014][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:23.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:23.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:23.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.019][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:23.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:23.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.028][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:23.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:23.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.032][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171370721].
biodb.DEBUG[2024-05-18 16:02:23.033][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:23.034][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:23.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:23.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:23.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:23.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:23.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:23.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:23.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:23.049][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715:226.19339285[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:23.052][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:02:23.053][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:02:23.054][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-05-18 16:02:23.131][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:02:23.132][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:02:23.133][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:02:23.134][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:02:23.270][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:02:23.272][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.content"
biodb.TRACE[2024-05-18 16:02:23.276][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.request"
biodb.DEBUG[2024-05-18 16:02:23.278][private$loadEntries] Creating entries from ids [3]: "171341956, 171226048, 171219496".
biodb.DEBUG[2024-05-18 16:02:23.278][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-05-18 16:02:23.280][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171341956, 171226048, 171219496".
biodb.TRACE[2024-05-18 16:02:23.281][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-05-18 16:02:23.281][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:02:23.282][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:02:23.283][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:02:23.284][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:02:23.285][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:02:23.286][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-05-18 16:02:23.287][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171341956,171226048,171219496/XML".
biodb.DEBUG[2024-05-18 16:02:23.289][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:02:23.290][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:02:23.291][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171341956,171226048,171219496/XML".
biodb.TRACE[2024-05-18 16:02:23.480][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171341956,171226048,171219496/XML).
biodb.TRACE[2024-05-18 16:02:23.749][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171341956.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171226048.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171219496.xml"
biodb.DEBUG[2024-05-18 16:02:23.752][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:02:23.753][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-05-18 16:02:23.754][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:02:23.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:23.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:23.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:23.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:23.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:23.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:23.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:23.768][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:23.769][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:23.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.770][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:23.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:23.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.775][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:23.776][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:23.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.777][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:23.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:23.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.782][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:23.783][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:23.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.785][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:23.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:23.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.789][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:23.790][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:23.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.792][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:23.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:23.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.796][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:23.797][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:23.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.799][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:23.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:23.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.804][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:23.805][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:23.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.806][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.808][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:23.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:23.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.811][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:23.812][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:23.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.814][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.815][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:23.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:23.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.818][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:23.819][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:23.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.821][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.822][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:23.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:23.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.826][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:23.826][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:23.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.828][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:23.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:23.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.833][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:23.834][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:23.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.835][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:23.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:23.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.840][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:23.840][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:23.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.842][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.843][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:23.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:23.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.847][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:23.848][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:23.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.849][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:23.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:23.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.854][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:23.855][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:23.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.856][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.858][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:23.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:23.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.861][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:23.862][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:23.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.863][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.865][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:23.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:23.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.868][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:23.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:23.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:23.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:23.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:23.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:23.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.878][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:23.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:23.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:23.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:23.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:23.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:23.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.888][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:23.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:23.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:23.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:23.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:23.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:23.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.898][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:23.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:23.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:23.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:23.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:23.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:23.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.908][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:23.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:23.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:23.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:23.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:23.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:23.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.918][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:23.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:23.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:23.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:23.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.925][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:23.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:23.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:23.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:23.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.931][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:23.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:23.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:23.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:23.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:23.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:23.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:23.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:23.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:23.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:23.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:23.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:23.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:23.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:23.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:23.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:23.956][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:23.957][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:23.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.959][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:23.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:23.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.963][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:23.964][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:23.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.966][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:23.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:23.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.970][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:23.971][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:23.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.973][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:23.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:23.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.977][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:23.978][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:23.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.980][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:23.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:23.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.984][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:23.985][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:23.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:23.997][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:23.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.002][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.003][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.005][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.010][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:24.010][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:24.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.012][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.013][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:24.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:24.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.017][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:24.018][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:24.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.019][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.020][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:24.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:24.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.024][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:24.025][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:24.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.026][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:24.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:24.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.031][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:24.032][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:24.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.033][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:24.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:24.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.038][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:24.039][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:24.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.040][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.042][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:24.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:24.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.045][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:24.046][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:24.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.047][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:24.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:24.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.052][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:24.053][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:24.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.054][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.055][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:24.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:24.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.059][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:24.060][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:24.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.062][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.063][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:24.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:24.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.067][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:24.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.077][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:24.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.087][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:24.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.090][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.097][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:24.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.107][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:24.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:24.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:24.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.120][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:24.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:24.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:24.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:24.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:24.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:24.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:24.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:24.154][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.155][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.157][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.161][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.162][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.164][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.168][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.169][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.171][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.175][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.176][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.178][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.182][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.183][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.185][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.189][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.190][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.192][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.196][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:24.197][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:24.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.199][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.200][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:24.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:24.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.203][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:24.204][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:24.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.206][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.207][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:24.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:24.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.210][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:24.211][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:24.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.213][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:24.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:24.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.217][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:24.218][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:24.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.220][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:24.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:24.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.224][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:24.225][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:24.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.227][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.228][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:24.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:24.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.232][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:24.233][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:24.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.234][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:24.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:24.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.239][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:24.240][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:24.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.241][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.242][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:24.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:24.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.246][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:24.247][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:24.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.248][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.249][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:24.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:24.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.253][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:24.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.263][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:24.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.273][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:24.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.288][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:24.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.299][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:24.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.309][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:24.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:24.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.313][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:24.374][self$createEntryFromContent] Accession numbers: 171341956, 171226048, 171219496.
biodb.DEBUG[2024-05-18 16:02:24.375][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:24.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:24.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:24.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:24.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:24.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:24.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:24.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:24.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.390][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.393][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:24.394][private$selectFields]
biodb.TRACE[2024-05-18 16:02:24.395][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:24.396][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:24.396][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:24.397][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.398][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.400][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.401][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.401][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.403][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.404][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:24.405][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:24.405][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.406][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.408][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.409][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:24.410][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.413][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.416][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.420][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171341956].
biodb.DEBUG[2024-05-18 16:02:24.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:24.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:24.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:24.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:24.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:24.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:24.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:24.430][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.437][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:24.438][private$selectFields]
biodb.TRACE[2024-05-18 16:02:24.438][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:24.439][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:24.440][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:24.441][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.442][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.443][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.444][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.445][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.447][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.447][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:24.448][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:24.449][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.450][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.452][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.452][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:24.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.460][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.464][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171226048].
biodb.DEBUG[2024-05-18 16:02:24.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:24.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:24.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:24.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:24.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:24.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:24.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:24.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.481][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:24.482][private$selectFields]
biodb.TRACE[2024-05-18 16:02:24.483][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:24.486][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:24.487][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:24.487][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.488][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.511][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.514][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.515][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.517][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.517][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:24.518][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:24.519][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.520][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.521][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.522][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:24.523][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.526][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.530][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.533][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171219496].
biodb.DEBUG[2024-05-18 16:02:24.534][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:24.535][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-18 16:02:24.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:24.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:24.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:24.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:24.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:24.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:24.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:24.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:24.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:24.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:24.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:24.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:24.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:24.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:24.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:24.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:24.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:24.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:24.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:24.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:24.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:24.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:24.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:24.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:24.586][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254:204.126644913746[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:24.589][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:24.590][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3123cd8cb57ce8b130489fc490c416f0".
biodb.TRACE[2024-05-18 16:02:24.591][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:24.593][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.content".
biodb.DEBUG[2024-05-18 16:02:24.594][private$loadEntries] Creating entries from ids [3]: "171364948, 171326566, 171268275".
biodb.DEBUG[2024-05-18 16:02:24.595][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-05-18 16:02:24.596][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171364948, 171326566, 171268275".
biodb.TRACE[2024-05-18 16:02:24.597][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-05-18 16:02:24.600][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171364948.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171326566.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171268275.xml".
biodb.DEBUG[2024-05-18 16:02:24.601][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:02:24.602][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-05-18 16:02:24.603][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:02:24.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:24.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:24.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:24.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:24.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:24.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:24.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:24.620][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.622][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.624][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.628][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.629][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.631][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.636][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.637][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.638][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.643][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.644][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.645][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.646][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.650][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.651][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.652][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.657][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.658][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.659][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.664][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:24.665][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:24.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.667][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.668][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:24.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:24.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.671][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:24.672][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:24.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.674][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.675][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:24.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:24.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.678][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:24.679][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:24.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.680][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:24.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:24.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.685][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:24.686][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:24.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.687][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:24.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:24.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.692][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:24.693][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:24.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.694][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.695][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:24.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:24.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.699][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:24.700][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:24.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.701][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:24.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:24.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.706][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:24.707][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:24.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.708][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:24.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:24.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.713][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:24.714][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:24.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.715][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.716][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:24.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:24.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.720][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:24.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.730][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:24.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.741][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:24.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.751][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:24.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.761][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:24.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:24.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:24.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:24.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:24.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:24.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:24.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:24.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:24.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:24.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:24.809][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.810][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.812][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.816][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.817][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.818][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.823][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.824][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.826][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.830][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.831][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.833][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.837][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.838][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.839][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.843][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.844][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.846][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.850][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:24.851][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:24.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.853][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.854][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:24.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:24.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.857][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:24.858][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:24.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.860][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.861][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:24.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:24.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.864][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:24.865][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:24.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.867][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:24.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:24.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.871][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:24.872][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:24.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.874][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:24.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:24.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.878][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:24.879][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:24.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.881][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.882][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:24.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:24.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.886][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:24.887][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:24.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.888][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:24.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:24.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.893][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:24.894][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:24.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.895][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.897][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:24.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:24.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.900][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:24.901][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:24.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.902][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.903][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:24.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:24.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.912][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:24.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:24.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.923][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:24.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:24.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.933][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:24.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:24.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.943][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:24.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:24.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.953][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:24.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:24.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.964][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:24.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:24.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:24.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:24.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:24.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:24.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:24.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:24.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:24.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:24.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:24.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:24.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:24.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:24.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:25.001][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:25.002][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:25.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.004][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:25.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:25.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.008][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:25.009][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:25.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.011][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:25.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:25.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.015][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:25.016][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:25.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.018][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:25.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:25.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.023][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:25.023][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:25.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.025][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:25.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:25.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.030][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:25.030][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:25.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.032][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:25.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:25.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.037][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:25.037][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:25.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.039][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:25.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:25.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.044][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:25.044][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:25.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.046][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.047][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:25.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:25.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.050][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:25.051][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:25.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.052][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.054][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:25.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:25.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.057][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:25.058][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:25.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.059][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:25.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:25.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.064][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:25.065][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:25.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.066][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:25.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:25.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.071][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:25.072][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:25.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.073][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.074][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:25.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:25.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.078][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:25.079][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:25.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.080][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:25.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:25.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.085][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:25.086][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:25.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.087][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.089][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:25.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:25.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.092][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:25.093][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:25.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.095][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.096][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:25.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:25.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.099][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:25.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:25.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:25.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:25.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:25.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:25.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.109][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:25.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:25.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:25.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:25.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.116][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:25.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:25.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.120][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:25.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:25.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:25.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:25.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:25.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:25.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.130][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:25.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:25.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:25.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:25.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:25.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:25.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.140][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:25.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:25.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:25.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:25.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:25.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:25.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.150][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:25.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:25.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.153][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:25.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:25.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:25.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:25.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:25.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:25.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:25.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:25.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:25.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:25.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:25.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:25.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:25.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:25.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:25.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:25.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:25.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:25.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:25.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:25.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:25.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:25.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:25.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:25.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:25.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:25.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:25.212][self$createEntryFromContent] Accession numbers: 171364948, 171326566, 171268275.
biodb.DEBUG[2024-05-18 16:02:25.213][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:25.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:25.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:25.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:25.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:25.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:25.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:25.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:25.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.227][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.231][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:25.232][private$selectFields]
biodb.TRACE[2024-05-18 16:02:25.232][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:25.233][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:25.234][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:25.235][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.236][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.237][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.238][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.239][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.241][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.242][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:25.242][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:25.243][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.244][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.246][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.247][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:25.248][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.251][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.255][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.258][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364948].
biodb.DEBUG[2024-05-18 16:02:25.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:25.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:25.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:25.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:25.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:25.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:25.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:25.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.272][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.275][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:25.276][private$selectFields]
biodb.TRACE[2024-05-18 16:02:25.277][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:25.278][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:25.278][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:25.279][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.280][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.282][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.282][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.283][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.285][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.286][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:25.287][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:25.287][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.288][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.290][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.290][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:25.291][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.295][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.302][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171326566].
biodb.DEBUG[2024-05-18 16:02:25.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:25.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:25.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:25.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:25.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:25.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:25.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:25.313][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.319][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:25.320][private$selectFields]
biodb.TRACE[2024-05-18 16:02:25.321][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:25.322][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:25.323][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:25.324][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.324][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.326][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.327][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.328][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.329][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.330][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:25.331][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:25.332][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.333][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.334][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.335][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:25.336][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:25.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.346][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171268275].
biodb.DEBUG[2024-05-18 16:02:25.347][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:25.348][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:25.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:25.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:25.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:25.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:25.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:25.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:25.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:25.364][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429:226.062362304571[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:25.367][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:02:25.367][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:02:25.369][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-05-18 16:02:25.457][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:02:25.458][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:02:25.459][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:02:25.460][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:02:25.550][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:02:25.552][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.content"
biodb.TRACE[2024-05-18 16:02:25.555][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.request"
biodb.DEBUG[2024-05-18 16:02:25.557][private$loadEntries] Creating entries from ids [1]: "171217291".
biodb.DEBUG[2024-05-18 16:02:25.558][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-18 16:02:25.560][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171217291".
biodb.TRACE[2024-05-18 16:02:25.561][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-18 16:02:25.561][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:02:25.562][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:02:25.563][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:02:25.564][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:02:25.565][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:02:25.566][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-18 16:02:25.567][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171217291/XML".
biodb.DEBUG[2024-05-18 16:02:25.569][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:02:25.570][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:02:25.571][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171217291/XML".
biodb.TRACE[2024-05-18 16:02:25.699][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171217291/XML).
biodb.TRACE[2024-05-18 16:02:25.863][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171217291.xml"
biodb.DEBUG[2024-05-18 16:02:25.865][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:02:25.866][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:02:25.867][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:02:25.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:25.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:25.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:25.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:25.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:25.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:25.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:25.880][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:25.880][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:25.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.882][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:25.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:25.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.887][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:25.887][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:25.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.889][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:25.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:25.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.894][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:25.894][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:25.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.896][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:25.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:25.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.901][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:25.902][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:25.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.903][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:25.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:25.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.908][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:25.909][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:25.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.910][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:25.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:25.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.915][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:25.916][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:25.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.917][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:25.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:25.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.922][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:25.923][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:25.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.924][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.925][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:25.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:25.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.929][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:25.930][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:25.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.931][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.933][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:25.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:25.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.936][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:25.937][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:25.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.938][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:25.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:25.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.943][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:25.944][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:25.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.946][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:25.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:25.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.950][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:25.951][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:25.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.953][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.954][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:25.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:25.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.967][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:25.968][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:25.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.970][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:25.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:25.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.975][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:25.976][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:25.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.977][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.979][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:25.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:25.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.982][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:25.983][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:25.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.985][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.986][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:25.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:25.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.989][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:25.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:25.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:25.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:25.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:25.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:25.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:25.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:25.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.000][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:26.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:26.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:26.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:26.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:26.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:26.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.010][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:26.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:26.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:26.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:26.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:26.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:26.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.021][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:26.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:26.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:26.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:26.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.028][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:26.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:26.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.031][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:26.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:26.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:26.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:26.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.038][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:26.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:26.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.041][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:26.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:26.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:26.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:26.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:26.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:26.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:26.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:26.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:26.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:26.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:26.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:26.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:26.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:26.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:26.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:26.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:26.078][self$createEntryFromContent] Accession numbers: 171217291.
biodb.DEBUG[2024-05-18 16:02:26.078][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:26.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:26.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:26.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:26.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:26.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:26.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:26.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:26.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.096][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.097][private$selectFields]
biodb.TRACE[2024-05-18 16:02:26.098][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:26.099][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:26.099][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.100][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.101][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.103][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.104][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.105][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.106][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.107][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.108][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.109][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.110][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.111][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.112][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:26.113][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.120][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.123][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171226048].
biodb.DEBUG[2024-05-18 16:02:26.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:26.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:26.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:26.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:26.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:26.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:26.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:26.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.141][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.142][private$selectFields]
biodb.TRACE[2024-05-18 16:02:26.143][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:26.144][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:26.144][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.145][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.146][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.148][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.149][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.150][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.151][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.152][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.153][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.154][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.155][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.156][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.157][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:26.158][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.165][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.169][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171219496].
biodb.DEBUG[2024-05-18 16:02:26.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:26.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:26.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:26.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:26.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:26.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:26.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:26.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.186][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.187][private$selectFields]
biodb.TRACE[2024-05-18 16:02:26.188][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:26.189][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:26.190][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.190][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.191][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.193][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.194][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.195][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.196][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.197][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.198][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.199][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.200][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.202][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.203][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:26.203][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.207][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.210][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.214][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171217291].
biodb.DEBUG[2024-05-18 16:02:26.215][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:26.215][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-18 16:02:26.223][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-18 16:02:26.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-18 16:02:26.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.227][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-18 16:02:26.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-18 16:02:26.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-18 16:02:26.234][biodb::testThat]
biodb.INFO [2024-05-18 16:02:26.235][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-05-18 16:02:26.235][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:26.236][biodb::testThat]
biodb.TRACE[2024-05-18 16:02:26.239][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-18 16:02:26.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-18 16:02:26.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.242][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-18 16:02:26.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-18 16:02:26.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:26.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:26.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:26.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:26.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:26.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:26.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:26.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:26.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:26.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:26.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:26.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:26.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:26.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:26.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:26.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:26.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:26.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:26.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:26.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:26.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:26.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:26.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:26.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:26.298][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:26.301][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:26.302][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-05-18 16:02:26.303][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:26.304][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-05-18 16:02:26.306][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:26.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:26.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:26.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:26.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:26.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:26.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:26.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:26.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.320][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.324][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.325][private$selectFields]
biodb.TRACE[2024-05-18 16:02:26.325][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:26.326][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:26.327][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.328][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.329][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.330][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.331][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.332][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.334][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.335][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.336][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.336][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.337][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.339][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.340][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:26.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.344][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.348][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.351][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380427].
biodb.DEBUG[2024-05-18 16:02:26.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:26.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:26.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:26.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:26.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:26.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:26.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:26.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.366][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.369][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.370][private$selectFields]
biodb.TRACE[2024-05-18 16:02:26.371][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:26.371][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:26.372][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.373][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.374][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.376][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.376][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.377][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.379][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.380][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.381][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.381][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.382][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.384][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.385][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:26.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.396][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-05-18 16:02:26.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:26.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:26.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:26.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:26.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:26.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:26.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:26.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.412][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.413][private$selectFields]
biodb.TRACE[2024-05-18 16:02:26.414][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:26.414][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:26.415][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.416][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.417][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.418][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.419][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.420][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.422][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.422][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.423][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.424][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.425][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.426][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.427][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:26.428][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.438][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171375796].
biodb.DEBUG[2024-05-18 16:02:26.439][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:26.440][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:26.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:26.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:26.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:26.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:26.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:26.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:26.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:26.456][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:26.459][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:26.460][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-05-18 16:02:26.461][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:26.462][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-05-18 16:02:26.464][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:26.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:26.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:26.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:26.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:26.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:26.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:26.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:26.475][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.481][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.482][private$selectFields]
biodb.TRACE[2024-05-18 16:02:26.483][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:26.484][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:26.485][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.486][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.486][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.488][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.489][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.490][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.491][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.492][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.493][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.494][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.495][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.496][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.497][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:26.498][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.501][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.509][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171368245].
biodb.DEBUG[2024-05-18 16:02:26.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:26.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:26.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:26.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:26.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:26.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:26.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:26.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.523][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.526][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.527][private$selectFields]
biodb.TRACE[2024-05-18 16:02:26.528][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:26.528][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:26.529][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.530][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.531][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.533][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.533][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.534][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.536][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.537][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.537][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.538][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.539][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.541][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.542][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:26.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.553][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171367693].
biodb.DEBUG[2024-05-18 16:02:26.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:26.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:26.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:26.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:26.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:26.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:26.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:26.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.577][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.578][private$selectFields]
biodb.TRACE[2024-05-18 16:02:26.579][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:26.579][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:26.580][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.581][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.582][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.584][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.585][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.585][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.587][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.588][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.589][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.590][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.590][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.592][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.593][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:26.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.597][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.605][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171367665].
biodb.DEBUG[2024-05-18 16:02:26.605][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:26.606][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-18 16:02:26.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:26.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:26.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:26.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:26.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:26.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:26.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:26.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:26.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:26.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:26.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:26.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:26.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:26.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:26.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:26.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:26.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:26.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:26.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:26.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:26.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:26.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:26.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:26.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:26.670][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:26.673][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:26.674][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-05-18 16:02:26.675][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:26.676][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-05-18 16:02:26.678][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:26.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:26.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:26.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:26.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:26.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:26.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:26.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:26.689][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.696][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.696][private$selectFields]
biodb.TRACE[2024-05-18 16:02:26.697][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:26.698][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:26.699][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.700][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.701][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.702][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.703][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.704][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.706][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.707][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.708][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.708][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.709][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.711][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.712][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:26.712][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.723][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-05-18 16:02:26.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:26.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:26.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:26.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:26.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:26.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:26.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:26.734][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.737][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.740][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.741][private$selectFields]
biodb.TRACE[2024-05-18 16:02:26.742][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:26.743][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:26.744][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.745][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.746][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.747][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.748][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.749][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.751][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.752][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.752][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.753][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.754][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.756][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.757][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:26.758][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.761][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.768][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372625].
biodb.DEBUG[2024-05-18 16:02:26.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:26.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:26.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:26.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:26.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:26.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:26.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:26.779][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.786][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.786][private$selectFields]
biodb.TRACE[2024-05-18 16:02:26.787][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:26.788][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:26.789][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.790][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.791][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.792][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.793][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.794][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.796][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.797][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.797][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.798][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.799][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.801][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.802][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:26.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.813][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372572].
biodb.DEBUG[2024-05-18 16:02:26.814][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:26.815][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:26.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:26.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:26.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:26.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:26.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:26.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:26.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:26.831][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:26.833][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:26.834][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-05-18 16:02:26.835][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:26.837][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-05-18 16:02:26.838][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:26.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:26.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:26.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:26.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:26.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:26.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:26.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:26.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.853][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.856][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.857][private$selectFields]
biodb.TRACE[2024-05-18 16:02:26.858][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:26.859][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:26.859][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.860][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.861][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.869][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.870][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.871][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.873][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.874][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.875][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.876][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.877][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.878][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.879][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:26.880][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.884][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.887][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.891][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374155].
biodb.DEBUG[2024-05-18 16:02:26.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:26.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:26.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:26.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:26.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:26.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:26.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:26.902][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.908][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.909][private$selectFields]
biodb.TRACE[2024-05-18 16:02:26.910][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:26.911][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:26.912][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.913][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.914][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.915][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.916][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.917][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.919][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.919][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.920][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.921][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.922][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.924][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.924][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:26.925][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.936][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374057].
biodb.DEBUG[2024-05-18 16:02:26.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:26.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:26.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:26.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:26.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:26.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:26.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:26.946][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.950][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.953][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.954][private$selectFields]
biodb.TRACE[2024-05-18 16:02:26.955][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:26.956][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:26.956][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.957][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.958][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.960][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.961][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.962][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.963][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.964][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.965][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:26.966][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.967][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.968][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.969][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:26.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:26.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:26.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:26.980][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171369134].
biodb.DEBUG[2024-05-18 16:02:26.981][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:26.982][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-18 16:02:27.001][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-18 16:02:27.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-18 16:02:27.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:27.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:27.005][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-18 16:02:27.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-18 16:02:27.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:27.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:27.011][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:27.012][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:27.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:27.013][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:27.014][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:27.015][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:27.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:27.016][ef$get] fields variable is a list.
biodb.INFO [2024-05-18 16:02:27.018][biodb::testThat]
biodb.INFO [2024-05-18 16:02:27.019][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2024-05-18 16:02:27.019][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:27.020][biodb::testThat]
biodb.TRACE[2024-05-18 16:02:27.023][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-18 16:02:27.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-18 16:02:27.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:27.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:27.026][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-18 16:02:27.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-18 16:02:27.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:27.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:27.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:27.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:27.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:27.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:27.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:27.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:27.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:27.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:27.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:27.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:27.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:27.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:27.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:27.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:27.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:27.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:27.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:27.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:27.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:27.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:27.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:27.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:27.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:27.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:27.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:27.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:27.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:27.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:27.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:27.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:27.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:27.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:27.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:27.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:27.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:27.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:27.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:27.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:27.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:27.073][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:27.075][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:02:27.076][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:02:27.077][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-05-18 16:02:27.156][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:02:27.157][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:02:27.158][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:02:27.159][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:02:27.323][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:02:27.325][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content"
biodb.TRACE[2024-05-18 16:02:27.328][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.request"
biodb.DEBUG[2024-05-18 16:02:27.330][private$loadEntries] Creating entries from ids [2]: "171381459, 171381203".
biodb.DEBUG[2024-05-18 16:02:27.331][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-05-18 16:02:27.332][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171381459, 171381203".
biodb.TRACE[2024-05-18 16:02:27.333][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-05-18 16:02:27.334][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:02:27.335][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:02:27.336][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:02:27.337][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:02:27.338][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:02:27.338][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-05-18 16:02:27.340][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171381459,171381203/XML".
biodb.DEBUG[2024-05-18 16:02:27.342][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:02:27.342][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:02:27.343][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171381459,171381203/XML".
biodb.TRACE[2024-05-18 16:02:27.487][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171381459,171381203/XML).
biodb.TRACE[2024-05-18 16:02:28.839][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171381459.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171381203.xml"
biodb.DEBUG[2024-05-18 16:02:28.840][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:02:28.841][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-05-18 16:02:28.842][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:02:28.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:28.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:28.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:28.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:28.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:28.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:28.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:28.853][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:28.854][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:28.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.856][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:28.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:28.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.860][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:28.861][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:28.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.863][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:28.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:28.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.867][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:28.868][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:28.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.870][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:28.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:28.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.874][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:28.875][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:28.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.877][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:28.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:28.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.881][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:28.882][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:28.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.883][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:28.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:28.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.888][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:28.889][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:28.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.890][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:28.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:28.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.905][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:28.906][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:28.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.908][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.909][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:28.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:28.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.912][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:28.913][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:28.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.915][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.916][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:28.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:28.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.919][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:28.920][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:28.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.922][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:28.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:28.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.926][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:28.927][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:28.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.929][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:28.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:28.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.933][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:28.934][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:28.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.935][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.936][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:28.937][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:28.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.939][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:28.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:28.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.943][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:28.944][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:28.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.946][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.947][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:28.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:28.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.950][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:28.951][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:28.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.953][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.954][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:28.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:28.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.957][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:28.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:28.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:28.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:28.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:28.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:28.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.967][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:28.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:28.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:28.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:28.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:28.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:28.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.976][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:28.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:28.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.979][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:28.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:28.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:28.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:28.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.986][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:28.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:28.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:28.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:28.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:28.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:28.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.995][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:28.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:28.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:28.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:28.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:29.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:29.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:29.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:29.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.005][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:29.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:29.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:29.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:29.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.018][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:29.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:29.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:29.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:29.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:29.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:29.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:29.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:29.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:29.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:29.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:29.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:29.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:29.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:29.041][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:29.042][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:29.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.044][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:29.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:29.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.048][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:29.049][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:29.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.050][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:29.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:29.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.055][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:29.056][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:29.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.057][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:29.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:29.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.062][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:29.062][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:29.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.064][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:29.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:29.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.069][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:29.069][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:29.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.071][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:29.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:29.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.075][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:29.076][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:29.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.078][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:29.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:29.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.083][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:29.083][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:29.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.085][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.086][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:29.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:29.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.089][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:29.090][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:29.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.092][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:29.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:29.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.096][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:29.097][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:29.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.099][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:29.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:29.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.103][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:29.104][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:29.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.106][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:29.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:29.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.111][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:29.111][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:29.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.113][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.114][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:29.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:29.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.118][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:29.119][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:29.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.120][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:29.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:29.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.125][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:29.126][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:29.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.127][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:29.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:29.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.132][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:29.133][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:29.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.134][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.135][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:29.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:29.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.138][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:29.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:29.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:29.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:29.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:29.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:29.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.147][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:29.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:29.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:29.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:29.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:29.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:29.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.157][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:29.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:29.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:29.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:29.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:29.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:29.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.167][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:29.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:29.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.170][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:29.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:29.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:29.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:29.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.177][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:29.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:29.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:29.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:29.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:29.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:29.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.194][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:29.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:29.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:29.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:29.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.207][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:29.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:29.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:29.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:29.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:29.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:29.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:29.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:29.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:29.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:29.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:29.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:29.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:29.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:29.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:29.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:29.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:29.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:29.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:29.242][self$createEntryFromContent] Accession numbers: 171381459, 171381203.
biodb.DEBUG[2024-05-18 16:02:29.243][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:29.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:29.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:29.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:29.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:29.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:29.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:29.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:29.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.261][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:29.261][private$selectFields]
biodb.TRACE[2024-05-18 16:02:29.262][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:29.263][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:29.264][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:29.264][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.266][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.267][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.268][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.269][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.270][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.271][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:29.272][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:29.273][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.273][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.275][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.276][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:29.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.287][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171381459].
biodb.DEBUG[2024-05-18 16:02:29.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:29.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:29.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:29.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:29.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:29.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:29.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:29.297][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.303][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:29.304][private$selectFields]
biodb.TRACE[2024-05-18 16:02:29.305][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:29.306][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:29.306][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:29.307][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.308][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.310][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.311][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.311][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.313][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.314][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:29.315][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:29.316][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.316][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.318][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.319][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:29.320][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.330][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171381203].
biodb.DEBUG[2024-05-18 16:02:29.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:29.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:29.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:29.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:29.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:29.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:29.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:29.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.344][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.347][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:29.348][private$selectFields]
biodb.TRACE[2024-05-18 16:02:29.349][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:29.349][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:29.350][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:29.351][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.352][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.354][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.354][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.355][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.357][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.358][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:29.359][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:29.359][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.360][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.362][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.363][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:29.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.370][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:29.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:29.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:29.374][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380427].
biodb.DEBUG[2024-05-18 16:02:29.375][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:29.376][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:29.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:29.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:29.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:29.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:29.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:29.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:29.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:29.392][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:29.394][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:02:29.395][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:02:29.397][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-05-18 16:02:29.480][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:02:29.481][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:02:29.482][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:02:29.483][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:02:30.396][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:02:30.398][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content"
biodb.TRACE[2024-05-18 16:02:30.401][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.request"
biodb.DEBUG[2024-05-18 16:02:30.402][private$loadEntries] Creating entries from ids [1]: "21454935".
biodb.DEBUG[2024-05-18 16:02:30.403][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-18 16:02:30.404][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21454935".
biodb.TRACE[2024-05-18 16:02:30.405][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-18 16:02:30.406][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:02:30.407][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:02:30.408][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:02:30.409][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:02:30.409][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:02:30.410][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-18 16:02:30.412][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/21454935/XML".
biodb.DEBUG[2024-05-18 16:02:30.414][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:02:30.414][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:02:30.416][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/21454935/XML".
biodb.TRACE[2024-05-18 16:02:30.523][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/21454935/XML).
biodb.TRACE[2024-05-18 16:02:30.665][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/21454935.xml"
biodb.DEBUG[2024-05-18 16:02:30.666][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:02:30.668][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:02:30.669][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:02:30.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:30.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:30.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:30.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:30.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:30.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:30.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:30.681][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:30.682][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:30.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.683][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:30.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:30.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.688][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:30.689][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:30.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.690][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:30.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:30.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.695][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:30.695][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:30.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.697][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:30.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:30.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.701][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:30.702][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:30.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.704][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:30.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:30.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.718][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:30.719][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:30.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.721][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:30.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:30.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.726][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:30.726][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:30.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.728][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:30.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:30.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.733][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:30.734][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:30.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.735][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.736][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:30.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:30.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.740][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:30.741][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:30.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.742][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.743][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:30.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:30.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.747][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:30.747][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:30.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.749][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:30.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:30.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.753][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:30.754][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:30.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.756][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:30.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:30.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.760][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:30.761][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:30.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.762][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.764][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:30.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:30.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.767][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:30.768][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:30.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.770][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:30.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:30.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.774][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:30.775][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:30.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.777][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.778][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:30.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:30.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.781][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:30.782][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:30.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.783][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:30.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:30.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.788][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:30.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:30.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:30.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:30.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:30.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:30.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.798][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:30.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:30.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:30.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:30.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:30.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:30.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.808][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:30.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:30.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:30.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:30.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:30.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:30.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.818][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:30.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:30.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:30.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:30.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:30.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:30.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.828][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:30.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:30.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:30.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:30.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:30.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:30.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.838][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:30.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:30.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:30.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:30.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:30.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:30.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:30.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:30.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:30.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:30.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:30.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:30.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:30.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:30.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:30.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:30.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:30.874][self$createEntryFromContent] Accession numbers: 21454935.
biodb.DEBUG[2024-05-18 16:02:30.875][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:30.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:30.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:30.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:30.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:30.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:30.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:30.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:30.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.889][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.892][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:30.893][private$selectFields]
biodb.TRACE[2024-05-18 16:02:30.894][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:30.895][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:30.896][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:30.896][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.897][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.899][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.900][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.901][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.902][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.903][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:30.904][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:30.905][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.906][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.907][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.908][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:30.909][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.912][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.916][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.919][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [21454935].
biodb.DEBUG[2024-05-18 16:02:30.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:30.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:30.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:30.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:30.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:30.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:30.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:30.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.936][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:30.937][private$selectFields]
biodb.TRACE[2024-05-18 16:02:30.938][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:30.939][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:30.939][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:30.940][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.941][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.943][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.944][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.945][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.946][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.947][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:30.948][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:30.949][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.950][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.951][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.952][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:30.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.963][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374155].
biodb.DEBUG[2024-05-18 16:02:30.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:30.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:30.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:30.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:30.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:30.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:30.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:30.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.981][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:30.982][private$selectFields]
biodb.TRACE[2024-05-18 16:02:30.982][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:30.983][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:30.984][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:30.985][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.986][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.987][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.988][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.989][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.990][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.991][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:30.992][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:30.993][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.993][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:30.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:30.995][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:30.996][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:30.997][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.006][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.014][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374057].
biodb.DEBUG[2024-05-18 16:02:31.014][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:31.015][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:31.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:31.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:31.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:31.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:31.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:31.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:31.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:31.049][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:31.052][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:31.053][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-05-18 16:02:31.054][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:31.055][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-05-18 16:02:31.057][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:31.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:31.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:31.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:31.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:31.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:31.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:31.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:31.068][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.071][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.074][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:31.075][private$selectFields]
biodb.TRACE[2024-05-18 16:02:31.076][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:31.077][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:31.078][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:31.079][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.079][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.081][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.082][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.083][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.084][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.085][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:31.086][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:31.087][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.087][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.089][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.090][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:31.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.094][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.100][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380427].
biodb.DEBUG[2024-05-18 16:02:31.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:31.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:31.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:31.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:31.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:31.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:31.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:31.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.114][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.117][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:31.118][private$selectFields]
biodb.TRACE[2024-05-18 16:02:31.119][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:31.119][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:31.120][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:31.121][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.122][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.123][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.124][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.125][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.126][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.127][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:31.128][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:31.129][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.130][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.131][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.132][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:31.133][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.143][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-05-18 16:02:31.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:31.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:31.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:31.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:31.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:31.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:31.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:31.153][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.160][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:31.160][private$selectFields]
biodb.TRACE[2024-05-18 16:02:31.161][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:31.162][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:31.163][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:31.163][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.164][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.166][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.166][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.167][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.169][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.170][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:31.170][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:31.171][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.172][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.173][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.174][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:31.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.185][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171375796].
biodb.DEBUG[2024-05-18 16:02:31.186][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:31.187][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:31.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:31.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:31.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:31.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:31.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:31.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:31.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:31.202][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:31.205][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:31.206][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-05-18 16:02:31.207][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:31.208][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-05-18 16:02:31.209][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:31.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:31.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:31.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:31.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:31.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:31.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:31.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:31.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.223][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.227][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:31.227][private$selectFields]
biodb.TRACE[2024-05-18 16:02:31.228][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:31.229][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:31.230][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:31.231][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.231][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.233][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.234][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.235][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.236][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.237][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:31.238][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:31.239][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.239][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.241][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.242][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:31.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.253][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171368245].
biodb.DEBUG[2024-05-18 16:02:31.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:31.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:31.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:31.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:31.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:31.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:31.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:31.263][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.267][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.270][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:31.271][private$selectFields]
biodb.TRACE[2024-05-18 16:02:31.271][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:31.272][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:31.273][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:31.274][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.275][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.276][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.277][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.278][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.280][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.281][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:31.282][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:31.282][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.283][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.285][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.286][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:31.287][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.290][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.304][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171367693].
biodb.DEBUG[2024-05-18 16:02:31.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:31.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:31.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:31.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:31.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:31.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:31.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:31.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.321][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:31.322][private$selectFields]
biodb.TRACE[2024-05-18 16:02:31.323][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:31.324][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:31.325][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:31.325][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.326][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.328][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.329][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.330][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.332][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.332][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:31.333][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:31.334][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.335][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.337][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.337][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:31.338][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.342][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:31.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:31.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:31.349][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171367665].
biodb.DEBUG[2024-05-18 16:02:31.350][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:31.351][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:31.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:31.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:31.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:31.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:31.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:31.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:31.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:31.383][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:31.386][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:02:31.387][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:02:31.388][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-05-18 16:02:31.467][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:02:31.468][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:02:31.469][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:02:31.470][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:02:31.562][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:02:31.564][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content"
biodb.TRACE[2024-05-18 16:02:31.567][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.request"
biodb.DEBUG[2024-05-18 16:02:31.569][private$loadEntries] Creating entries from ids [3]: "171381156, 171380756, 171380739".
biodb.DEBUG[2024-05-18 16:02:31.570][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-05-18 16:02:31.572][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171381156, 171380756, 171380739".
biodb.TRACE[2024-05-18 16:02:31.572][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-05-18 16:02:31.573][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:02:31.574][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:02:31.575][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:02:31.576][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:02:31.577][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:02:31.577][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-05-18 16:02:31.579][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171381156,171380756,171380739/XML".
biodb.DEBUG[2024-05-18 16:02:31.581][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:02:31.582][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:02:31.583][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171381156,171380756,171380739/XML".
biodb.TRACE[2024-05-18 16:02:31.730][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171381156,171380756,171380739/XML).
biodb.TRACE[2024-05-18 16:02:32.002][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171381156.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171380756.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171380739.xml"
biodb.DEBUG[2024-05-18 16:02:32.005][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:02:32.006][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-05-18 16:02:32.007][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:02:32.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:32.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:32.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:32.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:32.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:32.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:32.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:32.020][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:32.021][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:32.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.022][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:32.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:32.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.026][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:32.027][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:32.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.029][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:32.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:32.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.033][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:32.034][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:32.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.035][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:32.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:32.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.040][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:32.041][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:32.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.042][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:32.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:32.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.047][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:32.048][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:32.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.049][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.050][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:32.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:32.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.053][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:32.054][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:32.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.056][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:32.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:32.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.060][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:32.061][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:32.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.062][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.063][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:32.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:32.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.066][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:32.067][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:32.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.069][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.070][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:32.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:32.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.073][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:32.074][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:32.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.076][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.077][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:32.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:32.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.080][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:32.080][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:32.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.082][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:32.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:32.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.086][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:32.087][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:32.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.089][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.090][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:32.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:32.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.093][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:32.094][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:32.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.095][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:32.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:32.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.099][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:32.100][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:32.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.102][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.103][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:32.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:32.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.106][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:32.107][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:32.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.108][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.109][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:32.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:32.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.113][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:32.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:32.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.116][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:32.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:32.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:32.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:32.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.122][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:32.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:32.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:32.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:32.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:32.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:32.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.132][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:32.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:32.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:32.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:32.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:32.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:32.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.141][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:32.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:32.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:32.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:32.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:32.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:32.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.150][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:32.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:32.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:32.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:32.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:32.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:32.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.160][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:32.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:32.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:32.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:32.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:32.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:32.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:32.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:32.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:32.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:32.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:32.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:32.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:32.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:32.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:32.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:32.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:32.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:32.206][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:32.207][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:32.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.208][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:32.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:32.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.213][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:32.214][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:32.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.216][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:32.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:32.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.220][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:32.221][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:32.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.222][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:32.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:32.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.226][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:32.227][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:32.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.229][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:32.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:32.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.233][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:32.234][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:32.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.235][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.236][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:32.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:32.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.239][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:32.240][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:32.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.241][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:32.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:32.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.246][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:32.247][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:32.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.248][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.249][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:32.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:32.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.252][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:32.253][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:32.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.255][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.256][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:32.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:32.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.259][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:32.260][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:32.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.261][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:32.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:32.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.266][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:32.266][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:32.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.268][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:32.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:32.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.272][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:32.273][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:32.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.274][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.276][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:32.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:32.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.279][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:32.280][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:32.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.281][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:32.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:32.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.286][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:32.286][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:32.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.288][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.289][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:32.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:32.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.293][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:32.293][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:32.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.295][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.296][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:32.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:32.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.299][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:32.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:32.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:32.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:32.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:32.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:32.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.309][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:32.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:32.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.312][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:32.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:32.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:32.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:32.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.318][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:32.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:32.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:32.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:32.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:32.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:32.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.328][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:32.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:32.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:32.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:32.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:32.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:32.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.337][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:32.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:32.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:32.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:32.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:32.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:32.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.347][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:32.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:32.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.353][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:32.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:32.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:32.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:32.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:32.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:32.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:32.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:32.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:32.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:32.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:32.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:32.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:32.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:32.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:32.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:32.383][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:32.384][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:32.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.385][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:32.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:32.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.390][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:32.390][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:32.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.392][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:32.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:32.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.396][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:32.397][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:32.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.399][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:32.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:32.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.403][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:32.404][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:32.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.405][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:32.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:32.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.409][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:32.410][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:32.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.411][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:32.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:32.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.416][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:32.417][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:32.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.418][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:32.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:32.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.422][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:32.423][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:32.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.425][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.426][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:32.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:32.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.429][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:32.430][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:32.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.432][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.433][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:32.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:32.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.436][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:32.437][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:32.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.438][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:32.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:32.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.449][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:32.450][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:32.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.452][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.453][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:32.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:32.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.456][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:32.457][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:32.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.458][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.459][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:32.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:32.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.463][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:32.464][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:32.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.465][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:32.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:32.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.470][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:32.471][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:32.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.472][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.474][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:32.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:32.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.477][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:32.478][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:32.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.479][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.481][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:32.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:32.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.484][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:32.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:32.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:32.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:32.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:32.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:32.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.494][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:32.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:32.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:32.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:32.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:32.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:32.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.504][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:32.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:32.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:32.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:32.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:32.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:32.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.513][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:32.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:32.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:32.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:32.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.520][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:32.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:32.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.523][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:32.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:32.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:32.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:32.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:32.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:32.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:32.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:32.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.536][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:32.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:32.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:32.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:32.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:32.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:32.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:32.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:32.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:32.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:32.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:32.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:32.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:32.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:32.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:32.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:32.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:32.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:32.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:32.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:32.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:32.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:32.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:32.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:32.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:32.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:32.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:32.588][self$createEntryFromContent] Accession numbers: 171381156, 171380756, 171380739.
biodb.DEBUG[2024-05-18 16:02:32.589][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:32.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:32.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:32.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:32.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:32.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:32.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:32.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:32.600][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.604][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.607][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:32.607][private$selectFields]
biodb.TRACE[2024-05-18 16:02:32.608][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:32.609][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:32.610][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:32.610][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.611][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.613][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.614][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.615][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.616][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.617][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:32.618][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:32.619][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.619][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.621][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.622][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:32.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.626][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.633][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171381156].
biodb.DEBUG[2024-05-18 16:02:32.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:32.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:32.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:32.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:32.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:32.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:32.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:32.643][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.646][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.650][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:32.650][private$selectFields]
biodb.TRACE[2024-05-18 16:02:32.651][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:32.652][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:32.653][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:32.653][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.654][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.656][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.657][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.657][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.659][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.660][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:32.660][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:32.661][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.662][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.664][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.665][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:32.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.669][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.676][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380756].
biodb.DEBUG[2024-05-18 16:02:32.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:32.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:32.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:32.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:32.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:32.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:32.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:32.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.693][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:32.694][private$selectFields]
biodb.TRACE[2024-05-18 16:02:32.694][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:32.695][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:32.696][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:32.697][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.697][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.699][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.700][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.701][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.702][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.703][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:32.704][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:32.705][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.705][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.707][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.707][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:32.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.712][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.715][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:32.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:32.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:32.718][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380739].
biodb.DEBUG[2024-05-18 16:02:32.719][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:32.720][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:32.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:32.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:32.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:32.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:32.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:32.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:32.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:32.743][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:32.745][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:02:32.746][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:02:32.748][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-05-18 16:02:32.822][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:02:32.823][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:02:32.825][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:02:32.826][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:02:32.928][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:02:32.930][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content"
biodb.TRACE[2024-05-18 16:02:32.933][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.request"
biodb.DEBUG[2024-05-18 16:02:32.935][private$loadEntries] Creating entries from ids [3]: "171382334, 171380845, 171377837".
biodb.DEBUG[2024-05-18 16:02:32.936][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-05-18 16:02:32.937][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171382334, 171380845, 171377837".
biodb.TRACE[2024-05-18 16:02:32.938][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-05-18 16:02:32.939][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:02:32.940][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:02:32.941][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:02:32.942][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:02:32.943][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:02:32.944][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-05-18 16:02:32.945][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171382334,171380845,171377837/XML".
biodb.DEBUG[2024-05-18 16:02:32.947][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:02:32.948][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:02:32.949][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171382334,171380845,171377837/XML".
biodb.TRACE[2024-05-18 16:02:33.104][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171382334,171380845,171377837/XML).
biodb.TRACE[2024-05-18 16:02:33.385][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171382334.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171380845.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171377837.xml"
biodb.DEBUG[2024-05-18 16:02:33.388][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:02:33.389][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-05-18 16:02:33.390][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:02:33.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:33.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:33.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:33.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:33.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:33.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:33.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:33.403][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:33.403][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:33.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.405][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:33.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:33.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.409][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:33.410][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:33.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.412][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:33.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:33.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.417][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:33.418][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:33.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.419][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:33.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:33.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.424][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:33.425][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:33.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.426][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:33.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:33.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.430][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:33.431][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:33.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.433][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:33.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:33.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.437][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:33.438][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:33.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.440][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:33.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:33.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.444][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:33.445][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:33.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.447][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.448][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:33.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:33.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.452][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:33.452][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:33.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.454][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.455][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:33.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:33.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.458][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:33.459][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:33.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.461][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:33.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:33.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.465][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:33.466][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:33.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.467][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:33.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:33.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.471][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:33.472][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:33.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.474][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.475][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:33.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:33.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.478][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:33.479][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:33.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.480][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:33.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:33.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.484][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:33.485][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:33.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.487][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.488][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:33.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:33.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.491][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:33.492][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:33.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.494][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.495][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:33.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:33.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.498][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:33.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:33.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:33.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:33.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:33.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:33.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.508][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:33.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:33.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:33.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:33.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.515][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:33.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:33.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.518][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:33.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:33.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:33.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:33.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:33.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:33.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.528][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:33.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:33.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:33.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:33.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:33.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:33.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.538][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:33.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:33.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:33.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:33.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:33.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:33.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.548][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:33.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:33.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:33.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:33.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:33.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:33.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:33.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:33.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:33.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:33.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:33.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:33.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:33.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:33.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:33.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:33.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:33.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:33.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:33.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:33.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:33.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:33.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:33.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:33.586][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:33.587][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:33.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.589][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:33.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:33.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.593][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:33.594][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:33.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.596][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:33.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:33.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.600][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:33.601][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:33.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.603][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:33.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:33.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.607][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:33.608][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:33.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.610][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:33.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:33.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.614][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:33.615][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:33.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.617][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:33.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:33.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.632][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:33.633][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:33.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.635][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:33.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:33.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.639][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:33.640][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:33.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.641][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.643][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:33.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:33.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.646][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:33.647][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:33.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.648][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.649][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:33.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:33.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.652][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:33.653][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:33.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.655][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.656][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:33.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:33.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.659][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:33.660][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:33.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.662][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:33.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:33.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.666][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:33.667][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:33.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.668][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.670][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:33.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:33.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.673][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:33.674][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:33.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.676][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:33.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:33.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.680][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:33.681][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:33.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.683][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.684][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:33.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:33.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.687][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:33.688][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:33.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.689][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.690][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:33.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:33.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.694][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:33.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:33.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:33.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:33.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:33.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:33.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.703][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:33.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:33.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:33.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:33.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:33.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:33.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.713][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:33.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:33.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:33.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:33.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:33.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:33.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.723][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:33.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:33.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:33.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:33.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:33.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:33.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.733][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:33.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:33.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:33.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:33.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:33.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:33.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.743][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:33.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:33.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:33.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:33.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.750][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:33.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:33.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:33.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:33.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:33.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:33.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:33.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:33.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:33.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:33.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:33.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:33.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:33.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:33.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:33.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:33.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:33.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:33.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:33.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:33.781][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:33.782][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:33.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.784][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:33.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:33.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.788][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:33.789][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:33.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.791][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:33.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:33.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.795][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:33.796][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:33.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.798][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:33.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:33.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.802][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:33.803][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:33.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.805][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:33.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:33.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.809][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:33.810][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:33.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.811][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:33.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:33.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.816][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:33.817][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:33.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.818][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:33.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:33.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.823][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:33.824][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:33.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.825][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.826][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:33.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:33.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.830][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:33.830][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:33.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.832][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.833][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:33.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:33.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.837][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:33.837][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:33.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.839][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:33.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:33.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.843][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:33.844][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:33.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.846][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:33.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:33.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.850][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:33.851][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:33.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.853][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.854][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:33.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:33.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.858][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:33.859][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:33.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.860][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:33.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:33.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.865][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:33.865][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:33.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.867][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.868][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:33.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:33.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.872][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:33.872][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:33.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.874][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.875][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:33.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:33.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.879][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:33.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:33.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:33.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:33.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:33.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:33.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.889][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:33.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:33.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:33.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:33.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:33.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:33.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.899][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:33.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:33.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:33.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:33.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:33.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:33.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.921][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:33.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:33.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:33.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:33.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:33.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:33.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.932][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:33.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:33.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:33.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:33.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:33.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:33.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.942][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:33.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:33.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.945][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:33.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:33.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:33.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:33.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:33.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:33.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:33.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:33.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:33.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:33.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:33.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:33.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:33.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:33.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:33.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:33.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:33.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:33.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:33.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:33.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:33.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:33.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:33.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:33.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:33.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:33.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:33.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:33.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:33.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:33.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:33.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:33.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:33.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:33.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:33.999][self$createEntryFromContent] Accession numbers: 171382334, 171380845, 171377837.
biodb.DEBUG[2024-05-18 16:02:34.000][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:34.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:34.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:34.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:34.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:34.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:34.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:34.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:34.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.017][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.018][private$selectFields]
biodb.TRACE[2024-05-18 16:02:34.019][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:34.020][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:34.020][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.021][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.022][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.024][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.025][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.025][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.027][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.028][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.029][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.029][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.030][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.032][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.033][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:34.034][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.043][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171382334].
biodb.DEBUG[2024-05-18 16:02:34.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:34.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:34.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:34.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:34.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:34.052][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:34.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:34.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.060][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.061][private$selectFields]
biodb.TRACE[2024-05-18 16:02:34.061][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:34.062][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:34.063][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.064][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.065][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.066][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.067][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.068][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.069][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.070][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.071][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.072][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.073][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.074][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.075][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:34.076][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.083][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.087][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380845].
biodb.DEBUG[2024-05-18 16:02:34.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:34.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:34.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:34.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:34.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:34.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:34.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:34.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.101][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.104][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.105][private$selectFields]
biodb.TRACE[2024-05-18 16:02:34.105][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:34.106][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:34.107][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.108][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.109][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.110][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.111][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.112][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.113][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.114][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.115][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.116][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.117][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.119][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.119][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:34.120][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.131][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171377837].
biodb.DEBUG[2024-05-18 16:02:34.131][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:34.132][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:34.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:34.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:34.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:34.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:34.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:34.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:34.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:34.165][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:34.168][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:34.169][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9701d2e1a6b096cdfd56943877648611".
biodb.TRACE[2024-05-18 16:02:34.170][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:34.172][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content".
biodb.DEBUG[2024-05-18 16:02:34.173][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:34.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:34.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:34.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:34.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:34.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:34.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:34.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:34.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.191][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.192][private$selectFields]
biodb.TRACE[2024-05-18 16:02:34.193][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:34.193][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:34.194][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.195][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.196][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.197][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.198][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.199][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.201][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.201][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.202][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.203][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.204][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.206][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.212][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:34.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.217][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.221][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.225][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171381459].
biodb.DEBUG[2024-05-18 16:02:34.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:34.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:34.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:34.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:34.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:34.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:34.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:34.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.239][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.242][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.243][private$selectFields]
biodb.TRACE[2024-05-18 16:02:34.244][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:34.245][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:34.245][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.246][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.247][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.249][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.249][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.250][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.252][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.253][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.254][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.254][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.255][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.257][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.258][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:34.259][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.262][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.266][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.269][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171381203].
biodb.DEBUG[2024-05-18 16:02:34.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:34.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:34.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:34.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:34.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:34.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:34.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:34.279][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.286][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.286][private$selectFields]
biodb.TRACE[2024-05-18 16:02:34.287][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:34.288][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:34.288][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.289][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.290][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.291][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.292][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.293][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.295][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.296][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.296][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.297][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.298][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.300][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.300][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:34.301][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.311][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380427].
biodb.DEBUG[2024-05-18 16:02:34.312][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:34.313][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:34.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:34.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:34.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:34.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:34.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:34.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:34.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:34.329][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:34.331][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:34.332][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ce15c6e17e9ed97ba06e918ccdf7a5ba".
biodb.TRACE[2024-05-18 16:02:34.333][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:34.335][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content".
biodb.DEBUG[2024-05-18 16:02:34.336][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:34.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:34.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:34.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:34.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:34.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:34.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:34.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:34.347][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.353][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.354][private$selectFields]
biodb.TRACE[2024-05-18 16:02:34.355][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:34.356][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:34.356][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.357][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.358][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.359][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.360][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.361][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.363][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.363][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.364][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.365][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.366][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.367][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.368][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:34.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.379][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [21454935].
biodb.DEBUG[2024-05-18 16:02:34.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:34.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:34.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:34.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:34.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:34.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:34.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:34.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.395][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.396][private$selectFields]
biodb.TRACE[2024-05-18 16:02:34.396][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:34.397][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:34.398][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.399][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.400][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.401][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.402][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.403][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.405][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.406][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.407][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.407][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.408][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.410][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.411][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:34.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.418][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.421][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374155].
biodb.DEBUG[2024-05-18 16:02:34.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:34.423][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:34.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:34.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:34.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:34.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:34.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:34.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.438][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.439][private$selectFields]
biodb.TRACE[2024-05-18 16:02:34.440][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:34.440][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:34.441][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.442][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.443][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.444][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.445][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.446][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.448][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.448][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.449][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.450][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.451][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.452][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.453][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:34.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.460][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.463][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374057].
biodb.DEBUG[2024-05-18 16:02:34.464][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:34.465][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:34.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:34.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:34.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:34.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:34.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:34.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:34.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:34.504][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:34.507][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:34.509][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-05-18 16:02:34.510][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:34.511][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-05-18 16:02:34.513][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:34.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:34.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:34.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:34.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:34.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:34.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:34.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:34.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.531][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.532][private$selectFields]
biodb.TRACE[2024-05-18 16:02:34.533][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:34.533][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:34.534][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.535][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.536][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.538][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.538][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.539][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.541][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.542][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.543][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.543][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.544][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.546][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.547][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:34.548][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.559][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380427].
biodb.DEBUG[2024-05-18 16:02:34.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:34.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:34.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:34.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:34.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:34.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:34.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:34.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.577][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.577][private$selectFields]
biodb.TRACE[2024-05-18 16:02:34.578][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:34.579][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:34.580][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.581][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.581][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.583][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.584][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.585][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.587][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.587][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.588][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.589][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.590][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.592][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.592][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:34.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.597][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.600][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.603][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-05-18 16:02:34.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:34.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:34.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:34.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:34.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:34.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:34.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:34.614][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.620][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.621][private$selectFields]
biodb.TRACE[2024-05-18 16:02:34.622][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:34.623][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:34.623][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.624][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.625][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.627][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.628][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.628][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.630][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.631][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.632][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.632][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.633][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.635][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.636][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:34.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.640][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.643][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.647][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171375796].
biodb.DEBUG[2024-05-18 16:02:34.647][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:34.648][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:34.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:34.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:34.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:34.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:34.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:34.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:34.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:34.663][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:34.666][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:34.667][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-05-18 16:02:34.668][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:34.669][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-05-18 16:02:34.670][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:34.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:34.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:34.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:34.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:34.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:34.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:34.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:34.681][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.687][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.688][private$selectFields]
biodb.TRACE[2024-05-18 16:02:34.689][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:34.690][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:34.691][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.691][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.692][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.694][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.694][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.695][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.697][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.698][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.699][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.699][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.700][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.702][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.702][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:34.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.709][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.713][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171368245].
biodb.DEBUG[2024-05-18 16:02:34.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:34.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:34.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:34.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:34.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:34.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:34.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:34.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.729][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.730][private$selectFields]
biodb.TRACE[2024-05-18 16:02:34.731][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:34.732][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:34.732][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.733][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.734][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.736][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.737][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.738][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.739][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.740][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.741][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.742][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.743][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.744][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.745][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:34.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.752][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.756][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171367693].
biodb.DEBUG[2024-05-18 16:02:34.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:34.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:34.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:34.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:34.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:34.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:34.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:34.767][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.773][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.774][private$selectFields]
biodb.TRACE[2024-05-18 16:02:34.774][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:34.775][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:34.776][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.777][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.778][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.779][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.780][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.781][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.782][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.783][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.784][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.784][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.785][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.787][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.787][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:34.793][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.805][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171367665].
biodb.DEBUG[2024-05-18 16:02:34.806][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:34.807][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:34.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:34.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:34.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:34.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:34.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:34.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:34.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:34.839][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:34.842][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:34.843][cch$loadFileContent] Trying to load 1 files from cache: [1]: "897c6c1cf86bb233833a030ee6928dbf".
biodb.TRACE[2024-05-18 16:02:34.844][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:34.845][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content".
biodb.DEBUG[2024-05-18 16:02:34.846][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:34.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:34.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:34.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:34.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:34.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:34.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:34.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:34.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.860][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.863][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.864][private$selectFields]
biodb.TRACE[2024-05-18 16:02:34.865][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:34.866][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:34.866][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.867][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.868][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.869][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.870][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.871][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.872][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.873][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.874][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.875][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.875][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.877][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.878][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:34.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.888][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171381156].
biodb.DEBUG[2024-05-18 16:02:34.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:34.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:34.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:34.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:34.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:34.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:34.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:34.898][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.902][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.905][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.906][private$selectFields]
biodb.TRACE[2024-05-18 16:02:34.906][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:34.907][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:34.908][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.909][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.909][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.911][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.912][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.913][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.914][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.915][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.916][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.917][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.918][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.919][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.920][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:34.921][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.931][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380756].
biodb.DEBUG[2024-05-18 16:02:34.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:34.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:34.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:34.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:34.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:34.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:34.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:34.941][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.948][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.949][private$selectFields]
biodb.TRACE[2024-05-18 16:02:34.949][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:34.950][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:34.951][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.952][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.953][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.954][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.955][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.956][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.957][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.958][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.959][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:34.959][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.960][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.962][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.962][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:34.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:34.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:34.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:34.973][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380739].
biodb.DEBUG[2024-05-18 16:02:34.973][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:34.974][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:34.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:34.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:34.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:34.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:34.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:34.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:34.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:34.989][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:34.992][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:34.993][cch$loadFileContent] Trying to load 1 files from cache: [1]: "56a93d3214bbb5417ad13002a40518e8".
biodb.TRACE[2024-05-18 16:02:34.994][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:34.995][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content".
biodb.DEBUG[2024-05-18 16:02:34.997][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:34.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:34.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:35.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:35.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:35.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:35.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:35.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:35.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.014][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:35.015][private$selectFields]
biodb.TRACE[2024-05-18 16:02:35.016][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:35.017][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:35.017][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:35.018][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.019][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.020][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.021][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.022][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.024][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.024][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:35.025][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:35.026][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.027][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.029][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.029][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:35.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.036][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.040][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171382334].
biodb.DEBUG[2024-05-18 16:02:35.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:35.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:35.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:35.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:35.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:35.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:35.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:35.051][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.054][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.057][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:35.058][private$selectFields]
biodb.TRACE[2024-05-18 16:02:35.058][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:35.059][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:35.060][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:35.061][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.061][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.063][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.064][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.064][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.066][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.067][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:35.068][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:35.068][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.069][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.071][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.072][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:35.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.081][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.086][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.090][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380845].
biodb.DEBUG[2024-05-18 16:02:35.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:35.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:35.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:35.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:35.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:35.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:35.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:35.100][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.106][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:35.107][private$selectFields]
biodb.TRACE[2024-05-18 16:02:35.108][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:35.109][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:35.110][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:35.111][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.111][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.113][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.114][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.115][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.117][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.117][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:35.118][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:35.119][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.120][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.122][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.122][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:35.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.133][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171377837].
biodb.DEBUG[2024-05-18 16:02:35.134][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:35.135][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-18 16:02:35.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:35.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:35.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:35.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:35.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:35.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:35.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:35.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:35.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:35.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:35.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:35.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:35.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:35.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:35.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:35.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:35.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:35.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:35.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:35.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:35.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:35.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:35.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:35.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:35.195][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:35.198][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:02:35.198][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:02:35.200][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-05-18 16:02:35.277][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:02:35.278][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:02:35.280][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:02:35.281][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:02:35.379][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:02:35.381][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content"
biodb.TRACE[2024-05-18 16:02:35.384][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.request"
biodb.DEBUG[2024-05-18 16:02:35.387][private$loadEntries] Creating entries from ids [1]: "171379913".
biodb.DEBUG[2024-05-18 16:02:35.387][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-18 16:02:35.389][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171379913".
biodb.TRACE[2024-05-18 16:02:35.390][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-18 16:02:35.390][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:02:35.391][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:02:35.392][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:02:35.393][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:02:35.394][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:02:35.395][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-18 16:02:35.396][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171379913/XML".
biodb.DEBUG[2024-05-18 16:02:35.398][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:02:35.399][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:02:35.400][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171379913/XML".
biodb.TRACE[2024-05-18 16:02:35.517][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171379913/XML).
biodb.TRACE[2024-05-18 16:02:35.679][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171379913.xml"
biodb.DEBUG[2024-05-18 16:02:35.681][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:02:35.682][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:02:35.683][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:02:35.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:35.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:35.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:35.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:35.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:35.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:35.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:35.696][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:35.697][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:35.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.698][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:35.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:35.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.703][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:35.703][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:35.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.705][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:35.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:35.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.709][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:35.710][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:35.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.712][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:35.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:35.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.716][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:35.717][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:35.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.719][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:35.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:35.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.723][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:35.724][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:35.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.725][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:35.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:35.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.730][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:35.731][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:35.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.732][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:35.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:35.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.736][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:35.737][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:35.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.739][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.740][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:35.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:35.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.743][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:35.744][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:35.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.745][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.746][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:35.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:35.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.749][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:35.750][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:35.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.752][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.753][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:35.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:35.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.756][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:35.757][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:35.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.758][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.759][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:35.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:35.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.762][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:35.763][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:35.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.765][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.766][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:35.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:35.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.769][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:35.770][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:35.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.772][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:35.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:35.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.776][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:35.777][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:35.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.779][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.780][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:35.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:35.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.783][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:35.784][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:35.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.785][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.786][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:35.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:35.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.789][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:35.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:35.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:35.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:35.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.796][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:35.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:35.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.799][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:35.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:35.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:35.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:35.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:35.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:35.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.808][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:35.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:35.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:35.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:35.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:35.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:35.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.830][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:35.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:35.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:35.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:35.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:35.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:35.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.840][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:35.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:35.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:35.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:35.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:35.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:35.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.850][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:35.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:35.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:35.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:35.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:35.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:35.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:35.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:35.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:35.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:35.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:35.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:35.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:35.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:35.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:35.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:35.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:35.888][self$createEntryFromContent] Accession numbers: 171379913.
biodb.DEBUG[2024-05-18 16:02:35.889][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:35.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:35.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:35.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:35.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:35.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:35.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:35.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:35.899][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.906][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:35.907][private$selectFields]
biodb.TRACE[2024-05-18 16:02:35.908][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:35.908][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:35.909][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:35.910][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.911][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.912][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.913][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.914][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.916][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.916][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:35.917][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:35.918][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.919][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.921][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.921][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:35.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.933][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171381459].
biodb.DEBUG[2024-05-18 16:02:35.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:35.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:35.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:35.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:35.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:35.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:35.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:35.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.947][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.950][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:35.951][private$selectFields]
biodb.TRACE[2024-05-18 16:02:35.952][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:35.952][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:35.953][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:35.954][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.955][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.957][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.957][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.958][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.960][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.960][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:35.961][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:35.962][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.963][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.964][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.965][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:35.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.976][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171381203].
biodb.DEBUG[2024-05-18 16:02:35.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:35.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:35.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:35.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:35.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:35.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:35.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:35.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:35.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:35.993][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:35.994][private$selectFields]
biodb.TRACE[2024-05-18 16:02:35.995][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:35.996][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:35.997][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:35.998][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:35.999][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:36.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.000][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.001][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:36.002][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:36.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.004][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.005][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:36.005][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:36.006][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:36.007][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:36.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.009][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.009][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:36.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:36.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:36.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:36.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:36.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:36.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:36.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.020][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171379913].
biodb.DEBUG[2024-05-18 16:02:36.021][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:36.022][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:36.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:36.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:36.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:36.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:36.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:36.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:36.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:36.037][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:36.040][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:02:36.041][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:02:36.042][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-05-18 16:02:36.277][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:02:36.278][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:02:36.279][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:02:36.280][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:02:36.374][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:02:36.376][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content"
biodb.TRACE[2024-05-18 16:02:36.380][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.request"
biodb.DEBUG[2024-05-18 16:02:36.382][private$loadEntries] Creating entries from ids [3]: "171374855, 171374844, 12196694".
biodb.DEBUG[2024-05-18 16:02:36.383][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-05-18 16:02:36.384][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171374855, 171374844, 12196694".
biodb.TRACE[2024-05-18 16:02:36.385][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-05-18 16:02:36.386][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:02:36.387][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:02:36.388][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:02:36.389][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:02:36.389][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:02:36.390][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-05-18 16:02:36.392][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171374855,171374844,12196694/XML".
biodb.DEBUG[2024-05-18 16:02:36.393][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:02:36.394][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:02:36.396][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171374855,171374844,12196694/XML".
biodb.TRACE[2024-05-18 16:02:36.563][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171374855,171374844,12196694/XML).
biodb.TRACE[2024-05-18 16:02:36.816][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171374855.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171374844.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/12196694.xml"
biodb.DEBUG[2024-05-18 16:02:36.819][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:02:36.820][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-05-18 16:02:36.821][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:02:36.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:36.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:36.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:36.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:36.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:36.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:36.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:36.834][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:36.834][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:36.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.836][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:36.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:36.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.840][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:36.841][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:36.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.843][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:36.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:36.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.847][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:36.848][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:36.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.850][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:36.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:36.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.854][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:36.864][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:36.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.866][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:36.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:36.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.872][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:36.872][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:36.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.874][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:36.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:36.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.878][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:36.879][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:36.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.880][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:36.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:36.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.884][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:36.885][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:36.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.887][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.888][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:36.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:36.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.891][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:36.892][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:36.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.893][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.894][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:36.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:36.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.897][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:36.898][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:36.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.900][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:36.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:36.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.904][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:36.905][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:36.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.906][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:36.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:36.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.911][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:36.911][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:36.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.913][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.914][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:36.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:36.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.917][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:36.918][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:36.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.920][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:36.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:36.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.924][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:36.925][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:36.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.926][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.927][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:36.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:36.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.931][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:36.931][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:36.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.933][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.934][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:36.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:36.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.937][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:36.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:36.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:36.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:36.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.944][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:36.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:36.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.947][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:36.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:36.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:36.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:36.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:36.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:36.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.956][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:36.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:36.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:36.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:36.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:36.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:36.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.965][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:36.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:36.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:36.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:36.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:36.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:36.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.975][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:36.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:36.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:36.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:36.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:36.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:36.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.984][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:36.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:36.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:36.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:36.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:36.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:36.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:36.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:36.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:36.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:36.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:36.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:36.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:37.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:37.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:37.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:37.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:37.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:37.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:37.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:37.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:37.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:37.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:37.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:37.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:37.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:37.019][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:37.020][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:37.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.021][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:37.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:37.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.026][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:37.026][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:37.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.028][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:37.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:37.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.032][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:37.033][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:37.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.034][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:37.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:37.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.039][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:37.039][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:37.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.041][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:37.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:37.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.045][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:37.045][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:37.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.047][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:37.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:37.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.051][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:37.052][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:37.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.053][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:37.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:37.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.057][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:37.058][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:37.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.060][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.061][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:37.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:37.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.064][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:37.065][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:37.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.066][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.067][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:37.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:37.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.070][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:37.071][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:37.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.073][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:37.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:37.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.077][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:37.077][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:37.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.079][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:37.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:37.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.083][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:37.084][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:37.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.085][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.086][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:37.087][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:37.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.088][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:37.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:37.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.092][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:37.093][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:37.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.095][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.096][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:37.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:37.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.099][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:37.100][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:37.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.101][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.102][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:37.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:37.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.105][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:37.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:37.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:37.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:37.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.112][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:37.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:37.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.115][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:37.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:37.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:37.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:37.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.121][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:37.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:37.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.124][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:37.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:37.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:37.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:37.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:37.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:37.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.140][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:37.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:37.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:37.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:37.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:37.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:37.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.149][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:37.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:37.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:37.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:37.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:37.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:37.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.159][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:37.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:37.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.165][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:37.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:37.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.172][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:37.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:37.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:37.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:37.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:37.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:37.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:37.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:37.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:37.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:37.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:37.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:37.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:37.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:37.195][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:37.196][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:37.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.197][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:37.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:37.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.202][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:37.202][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:37.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.204][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:37.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:37.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.208][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:37.209][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:37.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.210][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:37.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:37.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.214][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:37.215][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:37.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.217][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:37.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:37.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.221][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:37.222][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:37.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.223][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:37.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:37.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.227][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:37.228][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:37.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.230][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:37.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:37.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.234][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:37.234][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:37.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.236][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.237][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:37.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:37.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.240][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:37.241][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:37.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.243][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.244][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:37.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:37.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.247][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:37.248][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:37.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.249][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.250][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:37.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:37.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.254][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:37.254][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:37.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.256][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.257][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:37.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:37.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.260][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:37.261][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:37.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.263][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.264][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:37.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:37.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.267][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:37.268][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:37.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.269][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:37.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:37.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.273][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:37.274][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:37.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.276][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.277][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:37.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:37.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.280][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:37.281][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:37.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.283][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.284][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:37.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:37.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.287][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:37.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:37.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:37.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:37.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:37.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:37.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.296][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:37.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:37.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:37.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:37.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:37.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:37.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.306][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:37.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:37.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:37.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:37.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.312][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:37.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:37.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.315][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:37.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:37.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:37.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:37.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:37.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:37.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.325][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:37.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:37.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:37.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:37.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:37.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:37.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.334][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:37.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:37.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.337][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:37.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:37.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:37.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:37.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:37.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:37.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:37.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:37.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:37.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:37.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:37.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:37.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:37.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:37.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:37.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:37.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:37.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:37.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:37.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:37.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:37.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:37.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:37.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:37.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:37.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:37.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:37.388][self$createEntryFromContent] Accession numbers: 171374855, 171374844, 12196694.
biodb.DEBUG[2024-05-18 16:02:37.389][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:37.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:37.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:37.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:37.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:37.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:37.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:37.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:37.407][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.414][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.415][private$selectFields]
biodb.TRACE[2024-05-18 16:02:37.416][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:37.417][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:37.417][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.418][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.419][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.421][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.421][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.422][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.424][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.424][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.425][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.426][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.427][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.429][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.429][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:37.430][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.440][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374855].
biodb.DEBUG[2024-05-18 16:02:37.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:37.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:37.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:37.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:37.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:37.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:37.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:37.451][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.458][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.458][private$selectFields]
biodb.TRACE[2024-05-18 16:02:37.459][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:37.460][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:37.461][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.462][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.462][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.464][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.465][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.466][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.467][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.468][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.469][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.469][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.470][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.472][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.472][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:37.473][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.477][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.480][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.484][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374844].
biodb.DEBUG[2024-05-18 16:02:37.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:37.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:37.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:37.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:37.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:37.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:37.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:37.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.498][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.501][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.502][private$selectFields]
biodb.TRACE[2024-05-18 16:02:37.503][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:37.504][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:37.504][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.505][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.506][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.508][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.508][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.509][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.511][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.511][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.512][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.513][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.514][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.515][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.516][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:37.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.523][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.526][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [12196694].
biodb.DEBUG[2024-05-18 16:02:37.527][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:37.528][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:37.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:37.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:37.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:37.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:37.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:37.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:37.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:37.559][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:37.562][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:37.563][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-05-18 16:02:37.564][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:37.565][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-05-18 16:02:37.566][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:37.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:37.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:37.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:37.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:37.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:37.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:37.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:37.577][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.583][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.584][private$selectFields]
biodb.TRACE[2024-05-18 16:02:37.585][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:37.585][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:37.586][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.587][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.588][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.589][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.590][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.591][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.593][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.594][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.594][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.595][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.596][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.597][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.598][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:37.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.602][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.605][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.609][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-05-18 16:02:37.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:37.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:37.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:37.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:37.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:37.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:37.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:37.619][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.626][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.627][private$selectFields]
biodb.TRACE[2024-05-18 16:02:37.628][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:37.628][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:37.629][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.630][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.631][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.633][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.633][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.634][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.636][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.637][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.637][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.638][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.639][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.641][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.641][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:37.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.645][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.652][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372625].
biodb.DEBUG[2024-05-18 16:02:37.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:37.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:37.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:37.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:37.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:37.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:37.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:37.662][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.665][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.668][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.669][private$selectFields]
biodb.TRACE[2024-05-18 16:02:37.670][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:37.671][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:37.671][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.672][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.673][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.674][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.675][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.676][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.678][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.679][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.679][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.680][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.681][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.688][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.689][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:37.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.695][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.702][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372572].
biodb.DEBUG[2024-05-18 16:02:37.703][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:37.704][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:37.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:37.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:37.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:37.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:37.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:37.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:37.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:37.720][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:37.723][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:37.724][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-05-18 16:02:37.725][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:37.726][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-05-18 16:02:37.728][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:37.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:37.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:37.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:37.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:37.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:37.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:37.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:37.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.746][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.746][private$selectFields]
biodb.TRACE[2024-05-18 16:02:37.747][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:37.748][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:37.749][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.750][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.750][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.752][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.753][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.754][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.755][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.756][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.757][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.758][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.758][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.760][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.761][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:37.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.772][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374155].
biodb.DEBUG[2024-05-18 16:02:37.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:37.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:37.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:37.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:37.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:37.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:37.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:37.783][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.790][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.790][private$selectFields]
biodb.TRACE[2024-05-18 16:02:37.791][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:37.792][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:37.793][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.794][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.795][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.796][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.797][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.798][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.799][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.800][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.801][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.802][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.803][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.804][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.805][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:37.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.816][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374057].
biodb.DEBUG[2024-05-18 16:02:37.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:37.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:37.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:37.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:37.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:37.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:37.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:37.827][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.831][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.834][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.835][private$selectFields]
biodb.TRACE[2024-05-18 16:02:37.835][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:37.836][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:37.837][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.838][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.839][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.840][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.841][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.842][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.843][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.844][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.845][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:37.845][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.846][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.848][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.849][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:37.850][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.853][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.856][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:37.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:37.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:37.860][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171369134].
biodb.DEBUG[2024-05-18 16:02:37.861][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:37.862][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:37.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:37.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:37.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:37.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:37.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:37.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:37.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:37.895][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:37.898][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:02:37.899][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:02:37.900][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-05-18 16:02:37.977][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:02:37.978][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:02:37.979][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:02:37.980][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:02:38.071][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:02:38.072][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content"
biodb.TRACE[2024-05-18 16:02:38.076][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.request"
biodb.DEBUG[2024-05-18 16:02:38.078][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:38.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:38.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:38.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:38.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:38.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:38.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:38.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:38.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.095][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:38.095][private$selectFields]
biodb.TRACE[2024-05-18 16:02:38.096][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:38.097][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:38.098][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:38.099][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.100][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.101][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.102][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.103][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.104][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.105][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:38.106][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:38.107][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.108][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.109][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.110][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:38.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.114][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.118][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.121][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171381156].
biodb.DEBUG[2024-05-18 16:02:38.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:38.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:38.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:38.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:38.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:38.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:38.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:38.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.139][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:38.140][private$selectFields]
biodb.TRACE[2024-05-18 16:02:38.141][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:38.141][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:38.142][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:38.143][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.144][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.146][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.154][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.155][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.157][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.158][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:38.160][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:38.160][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.161][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.163][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.164][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:38.165][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.168][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.171][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.175][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380756].
biodb.DEBUG[2024-05-18 16:02:38.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:38.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:38.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:38.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:38.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:38.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:38.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:38.186][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.192][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:38.193][private$selectFields]
biodb.TRACE[2024-05-18 16:02:38.194][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:38.195][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:38.196][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:38.196][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.197][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.199][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.200][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.201][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.202][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.203][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:38.204][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:38.205][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.206][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.207][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.208][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:38.209][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.212][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.216][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.219][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380739].
biodb.DEBUG[2024-05-18 16:02:38.220][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:38.221][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:38.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:38.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:38.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:38.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:38.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:38.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:38.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:38.237][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:38.240][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:02:38.241][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:02:38.242][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-05-18 16:02:38.319][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:02:38.320][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:02:38.321][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:02:38.323][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:02:38.426][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:02:38.428][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content"
biodb.TRACE[2024-05-18 16:02:38.431][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.request"
biodb.DEBUG[2024-05-18 16:02:38.433][private$loadEntries] Creating entries from ids [1]: "171382340".
biodb.DEBUG[2024-05-18 16:02:38.434][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-18 16:02:38.436][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171382340".
biodb.TRACE[2024-05-18 16:02:38.437][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-18 16:02:38.437][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:02:38.438][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:02:38.439][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:02:38.440][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:02:38.441][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:02:38.442][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-18 16:02:38.443][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171382340/XML".
biodb.DEBUG[2024-05-18 16:02:38.445][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:02:38.446][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:02:38.447][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171382340/XML".
biodb.TRACE[2024-05-18 16:02:38.565][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171382340/XML).
biodb.TRACE[2024-05-18 16:02:38.754][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171382340.xml"
biodb.DEBUG[2024-05-18 16:02:38.756][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:02:38.757][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:02:38.758][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:02:38.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:38.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:38.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:38.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:38.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:38.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:38.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:38.770][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:38.771][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:38.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.772][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:38.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:38.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.776][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:38.777][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:38.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.779][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:38.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:38.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.783][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:38.784][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:38.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.785][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:38.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:38.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.789][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:38.790][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:38.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.792][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:38.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:38.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.796][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:38.797][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:38.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.798][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:38.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:38.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.803][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:38.804][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:38.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.805][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:38.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:38.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.809][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:38.810][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:38.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.812][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.813][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:02:38.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:38.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.816][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:38.817][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:38.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.818][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.819][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:38.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:38.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.822][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:38.823][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:38.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.825][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:38.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:38.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.829][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:38.830][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:38.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.832][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:38.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:38.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.836][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:38.837][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:38.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.838][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.839][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:38.840][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:38.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.841][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:02:38.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:38.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.846][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:38.846][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:38.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.848][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.849][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:38.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:38.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.852][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:38.853][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:38.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.855][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.856][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:38.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:38.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.859][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:02:38.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:38.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:38.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:38.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:38.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:38.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.868][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:02:38.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:38.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:38.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:38.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:38.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:38.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.878][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:02:38.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:38.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:38.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:38.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:38.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:38.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.888][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:02:38.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:38.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:38.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:38.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:38.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:38.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.898][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:02:38.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:38.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:38.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:38.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:38.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:38.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.907][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:38.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:38.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.910][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:38.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:38.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:38.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:38.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:38.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:38.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:38.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:38.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:38.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:38.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:38.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:38.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:38.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:38.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:38.955][self$createEntryFromContent] Accession numbers: 171382340.
biodb.DEBUG[2024-05-18 16:02:38.956][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:38.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:38.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:38.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:38.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:38.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:38.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:38.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:38.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.974][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:38.975][private$selectFields]
biodb.TRACE[2024-05-18 16:02:38.976][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:38.976][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:38.977][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:38.978][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.979][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.980][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.981][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.982][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.984][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.984][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:38.985][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:38.986][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.987][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.989][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.989][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:38.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:38.997][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:38.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:38.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.000][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171382340].
biodb.DEBUG[2024-05-18 16:02:39.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:39.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:39.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:39.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:39.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:39.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:39.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:39.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.013][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.017][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.017][private$selectFields]
biodb.TRACE[2024-05-18 16:02:39.018][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:39.019][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:39.020][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.020][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.021][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.023][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.023][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.024][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.026][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.026][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.027][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.028][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.029][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.030][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.031][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:39.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.038][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.041][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171382334].
biodb.DEBUG[2024-05-18 16:02:39.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:39.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:39.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:39.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:39.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:39.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:39.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:39.051][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.054][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.057][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.058][private$selectFields]
biodb.TRACE[2024-05-18 16:02:39.059][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:39.059][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:39.060][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.061][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.062][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.063][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.064][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.064][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.066][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.067][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.068][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.068][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.069][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.071][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.071][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:39.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.079][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.082][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380845].
biodb.DEBUG[2024-05-18 16:02:39.083][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:39.084][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:39.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:39.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:39.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:39.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:39.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:39.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:39.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:39.117][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:39.119][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:39.120][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8ad32143f99567438eba281a371befbc".
biodb.TRACE[2024-05-18 16:02:39.121][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:39.123][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content".
biodb.DEBUG[2024-05-18 16:02:39.124][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:39.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:39.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:39.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:39.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:39.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:39.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:39.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:39.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.141][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.142][private$selectFields]
biodb.TRACE[2024-05-18 16:02:39.142][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:39.143][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:39.144][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.145][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.146][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.147][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.148][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.148][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.150][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.151][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.151][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.152][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.153][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.154][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.155][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:39.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.159][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.165][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171381459].
biodb.DEBUG[2024-05-18 16:02:39.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:39.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:39.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:39.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:39.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:39.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:39.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:39.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.181][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.182][private$selectFields]
biodb.TRACE[2024-05-18 16:02:39.183][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:39.183][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:39.184][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.185][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.186][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.187][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.188][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.188][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.190][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.190][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.191][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.192][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.193][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.194][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.195][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:39.196][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.205][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.209][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.213][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171381203].
biodb.DEBUG[2024-05-18 16:02:39.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:39.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:39.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:39.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:39.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:39.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:39.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:39.223][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.227][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.230][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.231][private$selectFields]
biodb.TRACE[2024-05-18 16:02:39.232][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:39.232][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:39.233][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.234][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.235][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.236][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.237][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.238][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.240][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.241][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.241][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.242][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.243][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.245][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.245][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:39.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.253][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.256][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171379913].
biodb.DEBUG[2024-05-18 16:02:39.257][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:39.257][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:39.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:39.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:39.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:39.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:39.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:39.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:39.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:39.273][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:39.275][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:39.276][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ead2a4c6d4c972bfbf7c3e8a0e8299c8".
biodb.TRACE[2024-05-18 16:02:39.277][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:39.278][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content".
biodb.DEBUG[2024-05-18 16:02:39.280][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:39.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:39.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:39.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:39.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:39.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:39.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:39.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:39.290][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.293][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.297][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.297][private$selectFields]
biodb.TRACE[2024-05-18 16:02:39.298][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:39.299][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:39.300][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.300][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.301][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.303][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.303][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.304][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.306][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.307][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.308][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.308][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.309][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.311][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.311][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:39.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.322][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374855].
biodb.DEBUG[2024-05-18 16:02:39.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:39.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:39.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:39.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:39.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:39.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:39.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:39.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.336][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.339][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.339][private$selectFields]
biodb.TRACE[2024-05-18 16:02:39.340][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:39.341][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:39.342][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.342][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.343][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.345][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.346][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.346][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.348][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.349][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.349][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.350][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.351][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.352][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.353][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:39.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.364][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374844].
biodb.DEBUG[2024-05-18 16:02:39.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:39.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:39.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:39.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:39.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:39.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:39.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:39.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.381][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.381][private$selectFields]
biodb.TRACE[2024-05-18 16:02:39.382][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:39.383][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:39.384][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.385][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.386][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.387][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.388][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.389][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.390][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.391][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.392][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.393][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.394][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.395][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.396][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:39.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.400][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.407][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [12196694].
biodb.DEBUG[2024-05-18 16:02:39.408][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:39.408][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:39.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:39.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:39.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:39.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:39.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:39.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:39.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:39.441][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:39.444][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:39.445][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-05-18 16:02:39.446][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:39.447][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-05-18 16:02:39.449][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:39.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:39.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:39.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:39.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:39.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:39.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:39.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:39.459][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.466][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.467][private$selectFields]
biodb.TRACE[2024-05-18 16:02:39.467][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:39.468][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:39.469][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.470][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.471][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.472][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.473][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.474][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.475][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.476][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.477][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.478][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.479][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.481][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.481][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:39.482][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.492][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.500][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-05-18 16:02:39.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:39.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:39.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:39.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:39.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:39.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:39.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:39.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.514][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.517][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.518][private$selectFields]
biodb.TRACE[2024-05-18 16:02:39.519][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:39.520][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:39.520][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.521][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.522][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.524][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.524][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.525][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.527][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.527][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.528][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.529][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.530][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.531][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.532][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:39.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.536][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.543][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372625].
biodb.DEBUG[2024-05-18 16:02:39.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:39.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:39.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:39.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:39.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:39.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:39.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:39.553][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.560][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.560][private$selectFields]
biodb.TRACE[2024-05-18 16:02:39.561][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:39.562][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:39.563][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.564][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.565][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.566][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.567][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.568][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.569][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.570][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.571][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.572][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.573][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.575][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.575][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:39.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.586][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372572].
biodb.DEBUG[2024-05-18 16:02:39.587][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:39.587][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:39.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:39.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:39.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:39.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:39.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:39.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:39.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:39.602][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:39.605][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:39.606][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-05-18 16:02:39.607][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:39.608][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-05-18 16:02:39.609][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:39.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:39.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:39.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:39.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:39.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:39.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:39.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:39.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.627][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.628][private$selectFields]
biodb.TRACE[2024-05-18 16:02:39.628][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:39.629][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:39.630][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.631][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.631][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.633][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.634][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.634][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.636][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.637][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.637][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.638][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.639][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.641][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.642][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:39.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.646][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.652][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374155].
biodb.DEBUG[2024-05-18 16:02:39.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:39.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:39.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:39.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:39.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:39.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:39.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:39.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.669][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.670][private$selectFields]
biodb.TRACE[2024-05-18 16:02:39.671][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:39.672][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:39.673][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.674][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.675][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.676][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.677][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.678][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.680][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.681][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.681][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.682][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.683][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.685][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.686][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:39.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.693][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.697][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374057].
biodb.DEBUG[2024-05-18 16:02:39.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:39.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:39.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:39.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:39.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:39.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:39.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:39.707][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.713][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.714][private$selectFields]
biodb.TRACE[2024-05-18 16:02:39.715][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:39.715][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:39.716][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.717][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.718][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.719][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.720][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.721][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.723][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.723][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.724][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.725][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.726][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.727][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.728][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:39.729][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.735][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.739][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171369134].
biodb.DEBUG[2024-05-18 16:02:39.740][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:39.740][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:39.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:39.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:39.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:39.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:39.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:39.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:39.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:39.781][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:39.784][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:39.785][cch$loadFileContent] Trying to load 1 files from cache: [1]: "93b38cb571769a97b3321f7f5a86241a".
biodb.TRACE[2024-05-18 16:02:39.787][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:39.788][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content".
biodb.DEBUG[2024-05-18 16:02:39.789][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:39.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:39.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:39.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:39.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:39.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:39.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:39.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:39.800][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.806][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.807][private$selectFields]
biodb.TRACE[2024-05-18 16:02:39.808][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:39.809][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:39.810][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.810][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.811][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.813][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.814][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.815][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.817][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.817][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.818][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.819][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.820][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.822][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.822][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:39.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.827][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.830][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.833][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171381156].
biodb.DEBUG[2024-05-18 16:02:39.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:39.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:39.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:39.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:39.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:39.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:39.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:39.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.850][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.851][private$selectFields]
biodb.TRACE[2024-05-18 16:02:39.852][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:39.852][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:39.853][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.854][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.855][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.856][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.857][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.858][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.860][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.861][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.862][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.863][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.863][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.865][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.866][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:39.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.878][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380756].
biodb.DEBUG[2024-05-18 16:02:39.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:39.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:39.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:39.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:39.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:39.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:39.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:39.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.891][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.895][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.895][private$selectFields]
biodb.TRACE[2024-05-18 16:02:39.896][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:39.897][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:39.898][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.899][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.900][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.901][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.902][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.903][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.904][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.905][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.906][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.907][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.908][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.909][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.910][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:39.911][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.918][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.922][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380739].
biodb.DEBUG[2024-05-18 16:02:39.922][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:39.923][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:39.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:39.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:39.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:39.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:39.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:39.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:39.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:39.939][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:39.942][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:39.943][cch$loadFileContent] Trying to load 1 files from cache: [1]: "405cf707472983a89dc9e0092ca888ad".
biodb.TRACE[2024-05-18 16:02:39.944][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:39.945][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content".
biodb.DEBUG[2024-05-18 16:02:39.947][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:39.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:39.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:39.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:39.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:39.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:39.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:39.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:39.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.961][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.964][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.965][private$selectFields]
biodb.TRACE[2024-05-18 16:02:39.966][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:39.966][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:39.967][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.968][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.969][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.971][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.971][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.972][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.974][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.974][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.975][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:39.976][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.977][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.978][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.979][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:39.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:39.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:39.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:39.989][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171382340].
biodb.DEBUG[2024-05-18 16:02:39.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:39.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:39.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:39.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:39.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:39.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:39.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:39.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.002][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.006][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:40.007][private$selectFields]
biodb.TRACE[2024-05-18 16:02:40.007][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:40.008][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:40.009][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:40.009][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.010][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.012][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.013][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.013][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.015][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.016][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:40.017][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:40.017][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.018][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.019][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.020][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:40.021][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.031][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171382334].
biodb.DEBUG[2024-05-18 16:02:40.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:40.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:40.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:40.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:40.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:40.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:40.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:40.041][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.047][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:40.048][private$selectFields]
biodb.TRACE[2024-05-18 16:02:40.048][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:40.049][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:40.050][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:40.051][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.052][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.053][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.054][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.055][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.056][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.057][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:40.058][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:02:40.064][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.065][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.067][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.068][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:02:40.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.076][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.080][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380845].
biodb.DEBUG[2024-05-18 16:02:40.081][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:40.081][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-18 16:02:40.100][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-18 16:02:40.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-18 16:02:40.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.103][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-18 16:02:40.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-18 16:02:40.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-18 16:02:40.110][biodb::testThat]
biodb.INFO [2024-05-18 16:02:40.110][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2024-05-18 16:02:40.111][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:40.112][biodb::testThat]
biodb.TRACE[2024-05-18 16:02:40.114][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-18 16:02:40.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-18 16:02:40.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.117][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-18 16:02:40.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-18 16:02:40.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:40.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:40.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:40.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:40.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:40.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:40.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:40.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:40.163][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:40.165][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:40.166][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-05-18 16:02:40.167][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:40.168][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-05-18 16:02:40.170][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:40.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:40.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:40.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:40.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:40.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:40.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:40.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:40.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:40.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:40.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:40.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:40.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.218][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:40.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:40.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.221][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:40.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:40.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:40.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:40.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:40.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:40.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.237][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:40.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:40.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.240][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:40.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:40.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.256][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:40.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:40.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.259][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:40.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:40.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.262][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.264][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.267][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:40.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:40.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.270][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:40.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:40.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.273][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:40.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:40.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.276][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:40.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:40.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.279][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:40.280][private$selectFields]
biodb.TRACE[2024-05-18 16:02:40.281][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:40.281][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:40.282][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:40.283][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:40.284][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:40.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.285][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.286][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.286][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.288][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.288][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.289][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.291][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.291][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.292][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.294][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.294][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.295][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.297][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.298][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.299][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.300][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.301][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:40.302][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:40.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.303][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.304][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:40.305][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:40.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.306][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.307][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.308][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.309][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.310][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:40.311][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:40.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.312][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.313][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.314][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.315][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.316][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.317][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.318][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.319][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:40.320][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:40.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.321][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.322][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.323][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.324][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.325][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:40.326][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:40.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.327][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.328][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:40.329][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:40.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.331][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.331][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:40.332][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:40.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.340][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.341][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.342][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.344][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.345][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.346][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.347][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.348][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.349][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.350][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.351][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.352][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.353][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.354][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.355][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.356][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.357][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:40.358][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:40.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.359][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.360][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:40.361][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:40.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.362][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.363][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.364][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.365][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.366][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:40.367][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:40.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.369][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.369][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.370][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.372][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.372][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.373][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.375][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.375][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:40.376][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:40.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.378][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.379][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.380][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.381][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.382][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:40.383][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:40.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.384][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.385][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:40.386][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:40.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.387][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.388][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:40.389][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:40.389][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:40.390][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:40.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.392][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.392][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.393][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.394][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.395][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.396][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.397][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.398][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.399][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.400][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.401][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.402][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.403][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.404][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.405][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.406][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.407][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:40.407][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:40.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.409][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.410][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:40.410][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:40.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.412][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.413][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.414][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.415][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.416][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:40.417][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:40.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.418][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.419][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.420][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.422][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.422][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.423][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.425][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.425][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:40.426][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:40.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.428][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.429][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.430][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.431][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.432][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:40.433][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:40.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.434][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.435][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:40.435][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:40.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.437][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.438][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:02:40.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:40.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:40.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:40.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:40.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:40.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:40.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.494][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:40.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:40.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.497][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:40.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:40.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.500][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:40.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:40.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.503][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:40.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:40.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:40.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:40.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:40.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:40.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.522][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:40.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:40.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.525][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:40.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:40.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.528][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:40.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:40.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.549][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:40.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:40.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.552][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:40.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:40.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.555][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:40.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:40.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.558][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.561][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.567][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:40.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:40.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.570][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:40.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:40.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:40.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:40.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:40.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:40.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.579][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:40.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:40.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.582][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:40.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:40.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.599][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171380427, 2-(octanoyl(15N)amino)acetic acid, 2-(1-oxooctyl(15N)amino)acetic acid, 2-(octanoyl(15N)amino)acetic acid, 2-(octanoyl(15N)amino)(1,2-13C2)ethanoic acid, ...].
biodb.DEBUG[2024-05-18 16:02:40.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:40.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:40.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:40.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:40.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:40.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:40.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:40.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:40.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:40.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:40.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:40.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.641][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.647][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:40.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:40.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.650][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:40.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:40.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:40.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:40.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.656][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:40.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:40.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.665][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:40.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:40.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.668][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:40.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:40.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.682][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:40.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:40.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.685][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:40.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:40.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.695][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:40.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:40.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.698][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:40.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:40.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.701][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:40.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:40.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.704][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:40.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:40.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.707][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:40.708][private$selectFields]
biodb.TRACE[2024-05-18 16:02:40.709][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:40.709][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:40.710][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:40.711][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:40.712][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:40.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.713][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.714][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.715][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.717][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.717][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.718][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.719][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.720][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.721][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.723][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.723][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.724][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.726][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.726][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.727][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.728][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.729][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:40.730][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:40.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.732][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.732][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:40.733][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:40.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.735][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.736][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.736][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.738][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.739][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:40.739][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:40.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.741][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.742][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.743][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.744][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.745][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.746][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.747][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.748][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:40.749][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:40.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.750][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.751][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.752][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.753][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.754][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:40.755][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:40.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.756][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.757][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:40.758][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:40.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.759][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.760][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:40.761][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:40.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.762][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.763][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.764][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.765][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.766][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.767][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.769][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.769][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.770][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.772][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.772][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.773][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.775][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.776][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.776][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.778][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.779][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:40.779][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:40.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.781][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.782][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:40.782][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:40.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.784][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.785][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.785][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.787][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.788][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:40.789][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:40.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.790][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.791][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.792][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.793][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.794][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.795][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.796][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.797][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:40.798][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:40.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.799][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.800][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.801][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.802][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.803][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:40.804][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:40.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.805][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.806][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:40.807][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:40.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.808][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.809][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:40.810][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:40.811][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:40.811][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:40.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.813][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.814][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.814][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.816][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.817][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.818][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.819][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.820][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.821][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.822][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.823][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.824][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.825][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.826][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.827][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.828][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.829][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:40.830][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:40.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.831][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.832][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:40.833][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:40.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.835][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.835][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.836][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.837][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.838][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:40.839][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:40.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.841][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.841][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.842][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.844][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.844][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.851][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.853][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.854][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:40.855][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:40.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.857][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.858][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.859][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.860][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.861][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:40.862][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:40.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.863][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.864][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:40.865][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:40.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.866][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.867][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:02:40.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:40.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:40.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:40.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:40.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:40.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:40.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:40.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.887][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:40.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.903][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:40.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:40.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:40.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.924][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:40.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:40.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.928][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:40.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:40.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.931][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:40.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:40.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:40.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:40.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:40.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:40.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:40.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:40.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:40.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.953][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:40.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:40.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.956][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:40.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:40.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.959][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:40.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:40.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:40.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:40.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.980][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:40.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:40.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.984][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:40.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:40.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.987][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:40.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:40.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:40.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:40.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:40.999][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.002][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.005][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.009][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.012][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.024][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171378033, (2R)-2-(diaminoamino)-5-guanidino-pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-[bis(azanyl)amino]-5-[bis(azanyl)methylideneamino]pentanoic acid, ...].
biodb.DEBUG[2024-05-18 16:02:41.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:41.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:41.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:41.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:41.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:41.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:41.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:41.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:41.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:41.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:41.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:41.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.072][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:41.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:41.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.075][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:41.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:41.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:41.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:41.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:41.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:41.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.091][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:41.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:41.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.094][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:41.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:41.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.116][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:41.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:41.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:41.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:41.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.126][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.129][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.133][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.136][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.139][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.142][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:41.143][private$selectFields]
biodb.TRACE[2024-05-18 16:02:41.144][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:41.145][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:41.146][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:41.147][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:41.147][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:41.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.149][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.150][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.151][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.152][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.153][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.154][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.156][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.157][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.157][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.159][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.160][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.161][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.162][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.163][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.164][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.166][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.166][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:41.167][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:41.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.169][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.170][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:41.171][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:41.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.172][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.173][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.174][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.175][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.176][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:41.177][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:41.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.178][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.179][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.180][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.182][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.182][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.183][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.185][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.186][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:41.186][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:41.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.188][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.189][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.190][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.191][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.192][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.193][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.195][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.195][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.196][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.198][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.199][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:41.199][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:41.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.201][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.202][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.203][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.204][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.205][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.206][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.208][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.208][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.209][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.211][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.212][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.212][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.214][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.215][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.215][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.217][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.218][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:41.219][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:41.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.220][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.221][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:41.222][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:41.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.223][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.224][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.225][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.226][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.227][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:41.228][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:41.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.229][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.230][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.231][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.233][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.233][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.234][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.236][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.236][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:41.237][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:41.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.238][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.239][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.240][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.241][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.242][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.243][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.244][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.245][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.246][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.247][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.248][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:41.249][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:41.250][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:41.250][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:41.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.252][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.253][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.254][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.255][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.256][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.257][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.258][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.259][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.260][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.262][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.262][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.263][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.265][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.266][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.266][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.268][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.269][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:41.270][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:41.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.271][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.272][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:41.273][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:41.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.274][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.275][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.276][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.278][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.278][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:41.279][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:41.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.281][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.281][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.282][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.284][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.285][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.285][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.287][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.288][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:41.289][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:41.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.290][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.291][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.292][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.293][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.294][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.295][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.296][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.297][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.298][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.299][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.300][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:02:41.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:41.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:41.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:41.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:41.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:41.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:41.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.338][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.361][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:41.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:41.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.364][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:41.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:41.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.367][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:41.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:41.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:41.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:41.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:41.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:41.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:41.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:41.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.387][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.396][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:41.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:41.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.399][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:41.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:41.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.403][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:41.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:41.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.426][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:41.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:41.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.429][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:41.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:41.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.432][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:41.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:41.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.445][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.448][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.454][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.457][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.460][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.469][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171375796, (Z)-2-cyano-3-phenyl-3-sulfanyl-prop-2-enamide, (Z)-2-cyano-3-mercapto-3-phenyl-2-propenamide, (Z)-2-cyano-3-phenyl-3-sulfanylprop-2-enamide, (Z)-2-cyano-3-phenyl-3-sulfanyl-prop-2-enamide, ...].
biodb.DEBUG[2024-05-18 16:02:41.470][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:41.471][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:41.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:41.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:41.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:41.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:41.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:41.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:41.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:41.486][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:41.489][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:41.490][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-05-18 16:02:41.491][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:41.492][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-05-18 16:02:41.493][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:41.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:41.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:41.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:41.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:41.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:41.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:41.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:41.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:41.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:41.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:41.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:41.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.515][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.539][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:41.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:41.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.542][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:41.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:41.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.545][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:41.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:41.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:41.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:41.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.557][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:41.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:41.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.560][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:41.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:41.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.576][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:41.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:41.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.579][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:41.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:41.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.591][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.594][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.597][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.600][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:41.601][private$selectFields]
biodb.TRACE[2024-05-18 16:02:41.602][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:41.602][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:41.603][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:41.604][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:41.605][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:41.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.606][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.607][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.608][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.610][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.610][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.611][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.613][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.613][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.614][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.615][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.616][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.617][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.619][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.619][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.620][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.622][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.622][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:41.623][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:41.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.625][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.625][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:41.626][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:41.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.628][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.628][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.629][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.630][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.652][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:41.653][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:41.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.655][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.656][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.657][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.659][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.659][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.660][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.662][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.662][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:41.663][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:41.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.665][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.665][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.666][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.668][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.669][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.670][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.671][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.672][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.673][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.674][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.675][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:41.676][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:41.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.677][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.678][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.679][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.680][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.681][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.682][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.684][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.684][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.685][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.687][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.687][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.688][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.690][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.691][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.692][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.693][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.694][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:41.695][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:41.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.696][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.697][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:41.698][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:41.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.699][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.700][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.701][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.702][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.703][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:41.704][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:41.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.705][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.706][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.707][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.709][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.709][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.710][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.712][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.713][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:41.713][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:41.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.715][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.716][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.716][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.718][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.719][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.719][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.721][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.721][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.722][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.724][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.724][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:41.725][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:41.726][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:41.727][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:41.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.728][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.729][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.730][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.732][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.732][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.733][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.735][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.735][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.736][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.737][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.738][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.739][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.741][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.742][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.743][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.744][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.745][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:41.746][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:41.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.748][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.748][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:41.749][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:41.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.751][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.752][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.753][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.754][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.755][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:41.756][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:41.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.757][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.758][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.759][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.761][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.761][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.762][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.764][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.765][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:41.766][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:41.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.767][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.768][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.769][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.771][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.771][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.772][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.774][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.775][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.776][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.777][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.778][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:02:41.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:41.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:41.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:41.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:41.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:41.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:41.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.796][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.808][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.837][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:41.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:41.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.840][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:41.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:41.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.843][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:41.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:41.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:41.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:41.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:41.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:41.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:41.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:41.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.863][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:41.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.866][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:41.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:41.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.869][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:41.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:41.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.873][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:41.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:41.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:41.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:41.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:41.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:41.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.901][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:41.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:41.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.904][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:41.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:41.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.908][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.911][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.915][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:41.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.924][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.928][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.931][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:41.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.935][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.942][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:41.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.951][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171368245, 2-fluoro-5-formyl-3-isopropoxy-benzoic acid, 2-fluoro-5-formyl-3-propan-2-yloxybenzoic acid, 2-fluoro-5-formyl-3-propan-2-yloxybenzoic acid, 2-fluoranyl-5-methanoyl-3-propan-2-yloxy-benzoic acid, ...].
biodb.DEBUG[2024-05-18 16:02:41.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:41.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:41.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:41.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:41.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:41.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:41.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:41.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:41.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:41.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:41.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:41.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:41.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:41.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:41.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:41.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:41.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:41.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:41.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.000][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:42.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:42.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.003][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:42.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:42.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:42.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:42.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:42.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:42.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.019][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:42.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:42.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.022][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:42.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:42.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.039][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:42.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:42.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.042][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:42.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:42.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.051][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.054][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.058][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.061][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.064][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:42.065][private$selectFields]
biodb.TRACE[2024-05-18 16:02:42.066][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:42.067][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:42.067][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:42.068][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:42.069][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:42.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.071][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.071][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.072][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.074][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.075][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.075][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.077][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.078][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.078][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.080][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.081][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.082][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.083][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.084][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.084][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.086][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.087][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:42.087][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:42.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.089][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.090][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:42.091][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:42.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.092][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.093][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.094][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.095][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.096][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:42.097][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:42.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.099][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.099][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.100][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.102][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.102][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.103][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.105][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.105][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:42.106][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:42.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.108][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.108][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.109][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.111][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.112][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.113][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.114][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.115][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.116][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.117][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.118][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:42.119][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:42.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.120][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.121][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.122][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.123][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.124][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.125][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.126][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.127][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.128][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.129][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.130][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.131][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.132][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.133][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.134][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.136][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.136][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:42.137][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:42.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.139][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.140][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:42.141][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:42.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.142][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.143][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.144][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.146][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.146][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:42.147][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:42.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.149][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.150][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.150][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.152][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.153][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.154][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.155][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.156][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:42.157][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:42.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.158][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.159][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.160][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.161][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.162][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.163][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.165][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.166][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.166][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.168][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.169][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:42.170][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:42.171][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:42.172][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:42.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.173][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.174][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.175][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.176][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.177][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.178][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.179][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.180][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.181][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.182][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.183][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.184][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.191][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.192][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.193][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.195][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.196][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:42.197][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:42.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.199][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.200][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:42.200][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:42.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.202][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.203][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.204][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.205][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.206][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:42.207][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:42.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.209][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.210][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.210][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.212][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.213][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.214][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.215][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.216][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:42.217][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:42.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.219][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.219][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.220][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.222][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.223][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.224][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.225][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.226][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.227][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.229][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.229][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:02:42.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:42.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:42.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:42.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:42.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:42.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:42.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.262][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.289][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:42.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:42.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.292][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:42.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:42.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.296][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:42.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:42.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:42.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:42.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:42.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:42.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.305][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:42.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:42.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.318][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:42.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:42.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.321][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:42.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:42.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.324][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:42.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:42.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.346][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:42.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:42.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.350][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:42.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:42.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.353][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:42.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:42.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.359][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.366][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.369][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.372][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.376][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.378][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.382][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.391][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171367693, 4-fluoro-3-formyl-5-isopropoxy-benzoic acid, 4-fluoro-3-formyl-5-propan-2-yloxybenzoic acid, 4-fluoro-3-formyl-5-propan-2-yloxybenzoic acid, 4-fluoranyl-3-methanoyl-5-propan-2-yloxy-benzoic acid, ...].
biodb.DEBUG[2024-05-18 16:02:42.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:42.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:42.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:42.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:42.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:42.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:42.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:42.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:42.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:42.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:42.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:42.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.437][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:42.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:42.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.440][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:42.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:42.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:42.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:42.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:42.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:42.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.461][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:42.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:42.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.464][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:42.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:42.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:42.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:42.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.482][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:42.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:42.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.485][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.491][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.495][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.498][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.500][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.503][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:42.504][private$selectFields]
biodb.TRACE[2024-05-18 16:02:42.505][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:42.505][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:42.506][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:42.507][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:42.508][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:42.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.509][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.510][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.511][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.512][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.513][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.514][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.515][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.516][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.517][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.518][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.519][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.520][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.521][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.522][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.523][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.524][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.525][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:42.526][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:42.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.527][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.528][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:42.529][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:42.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.530][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.531][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.532][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.533][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.534][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:42.535][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:42.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.537][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.537][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.538][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.539][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.540][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.541][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.543][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.543][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:42.544][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:42.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.546][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.546][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.547][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.548][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.549][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.550][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.552][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.552][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.553][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.554][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.555][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:42.556][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:42.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.558][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.558][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.559][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.560][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.561][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.562][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.564][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.564][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.565][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.567][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.567][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.568][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.570][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.571][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.572][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.573][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.574][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:42.575][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:42.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.576][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.577][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:42.578][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:42.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.579][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.580][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.581][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.583][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.583][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:42.584][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:42.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.586][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.586][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.587][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.589][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.589][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.590][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.591][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.592][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:42.593][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:42.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.594][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.595][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.596][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.597][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.598][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.599][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.600][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.601][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.601][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.603][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.603][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:42.604][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:42.605][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:42.606][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:42.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.607][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.608][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.609][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.610][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.611][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.612][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.613][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.614][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.615][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.617][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.617][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.618][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.619][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.620][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.621][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.622][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.623][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:42.624][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:42.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.625][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.626][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:42.627][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:42.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.628][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.629][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.630][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.631][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.632][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:42.633][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:42.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.635][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.635][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.636][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.638][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.638][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.639][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.641][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.641][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:42.642][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:42.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.643][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.644][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.645][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.646][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.647][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.648][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.649][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.650][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.651][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.652][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.653][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:02:42.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:42.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:42.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:42.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:42.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:42.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:42.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.663][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.669][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.717][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:42.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:42.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.720][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:42.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:42.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.724][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:42.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:42.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:42.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:42.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:42.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:42.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:42.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:42.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.740][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.746][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:42.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:42.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.749][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:42.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:42.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.753][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:42.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:42.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.775][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:42.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:42.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.778][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:42.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:42.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:42.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:42.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.794][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.797][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.800][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.803][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.806][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.809][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.818][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171367665, 3-fluoro-2-formyl-4-propoxy-benzoic acid, 3-fluoro-2-formyl-4-propoxybenzoic acid, 3-fluoro-2-formyl-4-propoxybenzoic acid, 3-fluoranyl-2-methanoyl-4-propoxy-benzoic acid, ...].
biodb.DEBUG[2024-05-18 16:02:42.819][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:42.819][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:42.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:42.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:42.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:42.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:42.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:42.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:42.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:42.840][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:42.842][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:42.843][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-05-18 16:02:42.844][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:42.846][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-05-18 16:02:42.847][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:42.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:42.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:42.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:42.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:42.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:42.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:42.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:42.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:42.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:42.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:42.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:42.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.894][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:42.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:42.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.897][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:42.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:42.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:42.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:42.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.903][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:42.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:42.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.912][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:42.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:42.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.915][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:42.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:42.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:42.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:42.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.929][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:42.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:42.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.932][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:42.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:42.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.935][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:42.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.941][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.944][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:42.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.947][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.950][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:42.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.953][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:42.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:42.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.956][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:42.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:42.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.959][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:42.960][private$selectFields]
biodb.TRACE[2024-05-18 16:02:42.961][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:42.961][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:42.962][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:42.963][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:42.969][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:42.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.971][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.972][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.973][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:42.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.975][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.976][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.977][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:42.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.978][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.979][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.980][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:42.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.981][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.982][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.983][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:42.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.984][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.985][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.985][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:42.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.987][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.988][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:42.988][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:42.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.990][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.990][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:42.991][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:42.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.993][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.993][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.994][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:42.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.996][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.996][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:42.997][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:42.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:42.999][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:42.999][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.000][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.002][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.002][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.003][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.005][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.005][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:43.006][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:43.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.008][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.009][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.009][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.011][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.012][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.012][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.014][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.014][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.015][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.017][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.018][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:43.018][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:43.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.020][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.021][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:43.022][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:43.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.023][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.024][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.025][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.026][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.027][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.028][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.030][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.030][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.031][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.033][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.034][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.034][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.036][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.037][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.037][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.039][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.040][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:43.041][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:43.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.042][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.043][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:43.043][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:43.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.045][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.046][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.047][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.048][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.049][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:43.050][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:43.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.051][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.052][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.053][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.054][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.055][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.056][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.057][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.058][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:43.059][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:43.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.060][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.061][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.062][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.063][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.064][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.064][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.066][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.067][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.068][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.069][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.070][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:43.071][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:43.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.072][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.073][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:43.074][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:43.075][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:43.075][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:43.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.077][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.078][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.079][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.080][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.081][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.082][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.083][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.084][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.085][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.086][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.087][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.088][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.089][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.090][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.091][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.092][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.093][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:43.094][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:43.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.095][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.096][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:43.097][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:43.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.098][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.099][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.100][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.101][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.102][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:43.103][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:43.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.105][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.105][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.106][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.108][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.108][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.109][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.111][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.111][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:43.112][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:43.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.114][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.115][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.115][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.117][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.117][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.118][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.120][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.121][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.121][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.123][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.124][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:02:43.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:43.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:43.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:43.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:43.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:43.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:43.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.134][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.184][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:43.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:43.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.187][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:43.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:43.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.190][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:43.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:43.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:43.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:43.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:43.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:43.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:43.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:43.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.213][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:43.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:43.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.216][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:43.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:43.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.219][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:43.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:43.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.248][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:43.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:43.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:43.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:43.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:43.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:43.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.258][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.262][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.268][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.271][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.275][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.281][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.284][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.293][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171380427, 2-(octanoyl(15N)amino)acetic acid, 2-(1-oxooctyl(15N)amino)acetic acid, 2-(octanoyl(15N)amino)acetic acid, 2-(octanoyl(15N)amino)(1,2-13C2)ethanoic acid, ...].
biodb.DEBUG[2024-05-18 16:02:43.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:43.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:43.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:43.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:43.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:43.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:43.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:43.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:43.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:43.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:43.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:43.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.316][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.340][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:43.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:43.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.343][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:43.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:43.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:43.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:43.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:43.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:43.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.358][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:43.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:43.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.361][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:43.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:43.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.376][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:43.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:43.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.379][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:43.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:43.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.392][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.395][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.398][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.401][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:43.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:43.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.404][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:43.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:43.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.407][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:43.408][private$selectFields]
biodb.TRACE[2024-05-18 16:02:43.408][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:43.409][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:43.410][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:43.410][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:43.411][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:43.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.412][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.413][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.414][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.415][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.416][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.417][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.418][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.419][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.420][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.421][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.422][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.423][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.424][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.425][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.426][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.428][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.428][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:43.429][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:43.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.431][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.431][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:43.432][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:43.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.434][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.435][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.435][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.437][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.438][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:43.438][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:43.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.440][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.441][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.441][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.443][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.444][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.444][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.446][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.446][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:43.447][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:43.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.449][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.450][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.450][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.452][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.453][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.454][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.455][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.456][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.457][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.458][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.459][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:43.460][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:43.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.461][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.462][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:43.463][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:43.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.465][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.465][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.466][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.468][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.469][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.469][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.471][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.472][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.472][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.474][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.475][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.476][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.477][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.478][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.479][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.480][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.481][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:43.482][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:43.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.483][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.490][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:43.491][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:43.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.493][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.494][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.495][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.497][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.498][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:43.498][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:43.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.500][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.500][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.501][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.503][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.503][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.504][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.506][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.506][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:43.507][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:43.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.509][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.510][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.510][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.512][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.513][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.514][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.515][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.516][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.517][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.518][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.519][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:43.520][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:43.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.522][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.523][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:43.523][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:43.524][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:43.525][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:43.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.527][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.527][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.528][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.530][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.531][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.531][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.533][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.534][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.535][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.536][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.537][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.538][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.539][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.540][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.541][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.542][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.543][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:43.544][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:43.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.545][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.546][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:43.547][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:43.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.549][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.550][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.551][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.552][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.553][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:43.554][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:43.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.555][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.556][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.557][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.558][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.559][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.560][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.561][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.562][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:43.563][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:43.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.564][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.565][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.566][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.568][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.569][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.570][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.571][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.572][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.573][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.574][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.575][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:02:43.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:43.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:43.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:43.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:43.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:43.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:43.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.635][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:43.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:43.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.638][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:43.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:43.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.642][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:43.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:43.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:43.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:43.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:43.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:43.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:43.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:43.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.661][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.664][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:43.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:43.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.667][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:43.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:43.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.670][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:43.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:43.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:43.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:43.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.696][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:43.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:43.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.699][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:43.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:43.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.702][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.712][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.715][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.718][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.722][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.725][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.728][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.738][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171378033, (2R)-2-(diaminoamino)-5-guanidino-pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-[bis(azanyl)amino]-5-[bis(azanyl)methylideneamino]pentanoic acid, ...].
biodb.DEBUG[2024-05-18 16:02:43.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:43.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:43.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:43.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:43.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:43.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:43.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:43.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:43.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:43.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:43.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:43.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.765][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.781][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.784][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.794][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:43.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:43.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.797][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:43.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:43.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.800][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:43.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:43.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:43.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:43.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.813][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:43.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:43.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.816][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:43.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:43.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.832][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:43.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:43.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.835][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:43.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:43.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.839][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.845][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.854][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.857][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:43.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:43.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.861][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:43.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:43.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.864][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:43.865][private$selectFields]
biodb.TRACE[2024-05-18 16:02:43.866][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:43.866][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:43.867][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:43.868][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:43.869][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:43.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.870][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.871][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.872][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.874][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.874][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.875][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.877][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.878][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.878][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.880][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.881][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.882][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.883][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.884][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.885][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.886][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.887][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:43.888][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:43.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.890][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.890][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:43.891][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:43.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.893][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.893][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.894][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.896][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.896][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:43.897][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:43.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.899][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.900][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.900][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.902][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.903][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.904][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.905][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.906][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:43.907][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:43.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.908][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.909][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.910][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.911][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.912][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.913][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.915][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.915][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.916][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.918][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.919][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:43.920][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:43.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.921][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.922][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:43.923][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:43.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.924][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.925][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.926][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.927][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.928][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.929][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.930][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.931][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.932][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.933][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.934][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.935][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.937][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.937][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.938][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.940][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.941][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:43.942][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:43.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.943][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.944][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:43.945][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:43.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.946][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.947][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.948][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:43.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.949][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.950][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:43.951][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:43.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.952][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.953][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.954][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:43.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.956][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.956][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.957][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:43.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.959][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.960][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:43.961][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:43.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.962][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.963][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.964][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:43.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.965][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.966][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.967][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:43.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.969][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.969][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.970][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:43.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.972][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.973][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:43.973][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:43.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.975][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.976][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:43.977][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:43.977][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:43.978][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:43.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.980][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.981][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.981][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:43.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.983][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.984][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.984][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:43.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.986][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.987][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.988][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:43.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.989][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.990][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.991][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:43.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.992][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.993][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.994][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:43.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.995][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.996][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:43.997][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:43.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:43.999][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:43.999][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:44.000][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:44.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.002][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.003][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.003][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.005][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.006][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:44.007][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:44.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.008][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.009][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.010][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.011][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.012][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.013][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.015][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.015][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:44.016][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:44.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.018][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.024][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.026][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.028][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.029][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.030][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.031][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.032][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.033][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.035][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.035][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:02:44.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:44.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:44.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:44.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:44.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:44.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:44.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.055][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.059][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.090][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:44.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:44.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.096][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:44.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:44.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.100][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:44.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:44.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.103][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:44.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:44.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:44.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:44.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.109][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:44.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:44.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.121][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:44.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:44.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.124][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:44.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:44.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.127][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:44.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:44.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.148][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:44.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:44.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.151][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:44.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:44.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.154][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:44.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:44.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.160][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.163][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.166][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.169][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.172][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.175][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.178][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.181][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.190][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171375796, (Z)-2-cyano-3-phenyl-3-sulfanyl-prop-2-enamide, (Z)-2-cyano-3-mercapto-3-phenyl-2-propenamide, (Z)-2-cyano-3-phenyl-3-sulfanylprop-2-enamide, (Z)-2-cyano-3-phenyl-3-sulfanyl-prop-2-enamide, ...].
biodb.DEBUG[2024-05-18 16:02:44.191][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:44.192][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:44.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:44.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:44.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:44.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:44.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:44.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:44.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:44.208][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:44.210][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:44.211][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-05-18 16:02:44.212][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:44.213][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-05-18 16:02:44.214][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:44.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:44.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:44.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:44.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:44.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:44.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:44.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:44.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:44.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:44.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:44.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:44.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.263][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:44.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:44.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.266][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:44.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:44.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:44.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:44.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:44.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:44.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.289][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:44.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:44.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.292][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:44.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:44.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.308][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:44.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:44.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.311][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:44.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:44.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.320][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.323][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.326][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.329][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.332][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:44.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:44.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.336][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:44.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:44.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.339][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:44.339][private$selectFields]
biodb.TRACE[2024-05-18 16:02:44.340][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:44.341][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:44.342][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:44.342][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:44.343][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:44.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.345][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.346][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.346][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.348][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.349][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.349][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.351][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.352][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.352][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.354][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.355][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.355][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.357][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.358][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.358][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.360][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.361][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:44.362][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:44.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.363][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.364][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:44.365][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:44.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.366][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.367][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.368][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.370][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.370][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:44.371][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:44.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.373][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.374][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.374][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.376][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.377][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.378][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.379][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.380][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:44.381][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:44.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.383][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.383][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.384][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.386][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.386][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.387][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.389][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.390][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.390][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.392][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.393][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:44.394][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:44.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.395][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.396][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:44.397][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:44.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.398][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.399][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.400][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.401][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.402][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.403][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.404][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.405][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.406][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.408][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.408][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.409][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.411][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.412][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.412][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.414][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.415][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:44.415][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:44.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.417][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.418][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:44.419][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:44.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.420][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.421][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.422][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.423][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.424][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:44.425][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:44.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.426][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.427][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.428][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.429][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.430][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.431][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.432][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.433][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:44.434][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:44.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.436][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.436][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.437][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.439][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.440][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.441][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.442][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.443][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.444][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.445][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.446][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:44.447][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:44.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.448][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.449][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:44.450][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:44.451][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:44.452][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:44.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.453][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.454][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.455][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.456][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.457][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.458][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.459][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.460][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.461][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.462][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.463][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.464][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.465][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.466][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.467][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.468][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.469][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:44.470][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:44.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.472][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.472][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:44.473][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:44.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.475][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.475][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.476][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.478][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.478][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:44.479][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:44.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.481][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.482][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.482][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.484][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.485][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.486][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.487][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.488][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:44.489][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:44.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.491][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.491][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.492][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.494][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.495][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.496][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.497][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.498][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.499][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.500][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.501][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:02:44.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:44.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:44.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:44.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:44.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:44.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:44.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.515][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.555][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.569][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:44.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:44.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.572][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:44.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:44.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.575][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:44.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:44.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:44.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:44.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:44.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:44.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:44.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:44.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.599][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:44.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:44.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.602][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:44.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:44.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.605][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:44.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:44.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.628][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:44.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:44.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.631][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:44.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:44.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.634][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:44.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:44.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.640][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.647][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.650][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.653][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.656][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.659][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.671][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171368245, 2-fluoro-5-formyl-3-isopropoxy-benzoic acid, 2-fluoro-5-formyl-3-propan-2-yloxybenzoic acid, 2-fluoro-5-formyl-3-propan-2-yloxybenzoic acid, 2-fluoranyl-5-methanoyl-3-propan-2-yloxy-benzoic acid, ...].
biodb.DEBUG[2024-05-18 16:02:44.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:44.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:44.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:44.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:44.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:44.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:44.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:44.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:44.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:44.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:44.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:44.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.720][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:44.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:44.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.723][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:44.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:44.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:44.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:44.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:44.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:44.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.739][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:44.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:44.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.743][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:44.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:44.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.759][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:44.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:44.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.762][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:44.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:44.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.772][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.775][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.778][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.781][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.784][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:44.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:44.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.788][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:44.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:44.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.791][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:44.791][private$selectFields]
biodb.TRACE[2024-05-18 16:02:44.792][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:44.793][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:44.794][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:44.795][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:44.795][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:44.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.797][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.798][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.798][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.800][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.801][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.802][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.803][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.804][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.805][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.807][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.808][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.809][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.810][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.817][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.819][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.821][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.822][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:44.823][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:44.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.825][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.825][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:44.826][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:44.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.828][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.829][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.830][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.831][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.832][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:44.833][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:44.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.835][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.835][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.836][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.838][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.839][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.840][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.841][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.842][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:44.843][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:44.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.845][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.845][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.846][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.848][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.849][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.850][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.851][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.852][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.853][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.854][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.855][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:44.856][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:44.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.858][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.858][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:44.859][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:44.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.861][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.862][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.863][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.864][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.865][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.866][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.867][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.868][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.869][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.870][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.871][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.872][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.874][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.874][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.875][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.877][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.878][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:44.878][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:44.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.880][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.881][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:44.881][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:44.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.883][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.884][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.884][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.886][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.887][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:44.888][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:44.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.889][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.890][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.891][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.893][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.893][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.894][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.896][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.896][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:44.897][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:44.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.898][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.899][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.900][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.902][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.902][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.903][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.905][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.906][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.906][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.908][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.909][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:44.909][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:44.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.911][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.912][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:44.913][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:44.914][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:44.914][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:44.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.916][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.917][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.917][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.919][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.920][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.921][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.922][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.923][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.924][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.925][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.926][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.927][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:44.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.928][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.929][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.930][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:44.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.931][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.932][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:44.933][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:44.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.934][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.935][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:44.936][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:44.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.938][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.938][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.939][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:44.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.941][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.942][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:44.943][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:44.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.944][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.945][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.946][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:44.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.947][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.948][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.949][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:44.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.951][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.951][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:44.952][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:44.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.954][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.955][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.955][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:44.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.957][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.958][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.959][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:44.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.960][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.961][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.962][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:44.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.963][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.964][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:02:44.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:44.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:44.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:44.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:44.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:44.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:44.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:44.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:44.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.994][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:44.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:44.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:44.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.000][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.023][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:45.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:45.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.026][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:45.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:45.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.030][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:45.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:45.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:45.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:45.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.036][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:45.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:45.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.039][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:45.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:45.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.052][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:45.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:45.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.055][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:45.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:45.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.058][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:45.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:45.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.088][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:45.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:45.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.091][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:45.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:45.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.095][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:45.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:45.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.105][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.108][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.111][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.121][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.125][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.134][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171367693, 4-fluoro-3-formyl-5-isopropoxy-benzoic acid, 4-fluoro-3-formyl-5-propan-2-yloxybenzoic acid, 4-fluoro-3-formyl-5-propan-2-yloxybenzoic acid, 4-fluoranyl-3-methanoyl-5-propan-2-yloxy-benzoic acid, ...].
biodb.DEBUG[2024-05-18 16:02:45.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:45.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:45.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:45.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:45.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:45.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:45.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:45.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:45.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:45.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:45.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:45.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.184][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:45.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:45.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.187][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:45.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:45.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:45.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:45.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:45.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:45.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.203][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:45.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:45.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.206][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:45.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:45.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.222][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:45.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:45.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.226][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:45.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:45.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.238][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.241][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.248][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:45.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:45.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.251][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:45.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:45.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.254][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:45.255][private$selectFields]
biodb.TRACE[2024-05-18 16:02:45.255][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:45.256][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:45.257][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:45.258][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:45.259][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:45.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.260][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.261][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.262][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.263][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.264][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.265][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.267][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.267][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.268][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.270][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.271][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.272][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.273][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.274][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.275][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.276][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.277][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:45.278][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:45.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.279][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.280][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:45.281][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:45.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.282][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.283][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.284][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.285][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.286][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:45.287][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:45.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.288][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.289][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.290][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.292][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.292][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.293][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.295][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.296][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:45.297][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:45.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.298][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.299][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.300][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.301][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.302][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.303][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.305][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.306][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.306][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.308][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.309][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:45.310][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:45.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.311][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.312][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:45.313][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:45.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.315][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.315][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.316][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.318][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.319][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.319][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.321][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.322][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.323][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.324][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.325][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.326][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.327][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.328][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.329][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.331][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.331][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:45.332][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:45.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.334][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.335][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:45.336][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:45.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.337][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.338][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.339][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.340][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.341][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:45.342][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:45.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.344][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.344][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.345][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.347][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.354][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.355][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.357][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.358][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:45.359][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:45.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.361][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.362][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.362][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.364][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.365][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.366][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.368][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.368][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.369][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.371][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.372][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:45.373][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:45.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.374][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.375][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:45.376][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:45.377][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:45.378][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:45.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.379][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.380][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.381][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.383][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.383][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.384][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.386][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.387][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.388][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.389][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.390][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.391][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.393][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.393][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.394][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.396][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.397][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:45.398][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:45.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.399][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.400][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:45.401][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:45.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.402][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.403][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.404][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.405][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.406][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:45.407][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:45.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.408][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.409][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.410][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.412][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.413][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.413][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.415][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.416][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:45.417][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:45.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.418][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.419][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.420][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.421][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.422][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.423][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.424][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.425][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.426][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.427][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.428][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:02:45.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:45.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:45.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:45.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:45.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:45.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:45.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.491][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:45.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:45.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.494][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:45.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:45.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.497][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:45.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:45.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:45.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:45.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:45.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:45.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.508][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:45.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:45.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.521][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:45.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:45.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.524][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:45.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:45.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.527][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:45.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:45.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.551][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:45.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:45.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.555][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:45.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:45.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.558][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:45.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:45.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.572][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.575][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.579][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.582][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.586][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.589][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.598][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171367665, 3-fluoro-2-formyl-4-propoxy-benzoic acid, 3-fluoro-2-formyl-4-propoxybenzoic acid, 3-fluoro-2-formyl-4-propoxybenzoic acid, 3-fluoranyl-2-methanoyl-4-propoxy-benzoic acid, ...].
biodb.DEBUG[2024-05-18 16:02:45.599][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:45.600][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-18 16:02:45.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:45.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:45.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:45.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:45.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:45.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:45.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:45.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:45.657][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:45.660][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:45.661][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-05-18 16:02:45.662][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:45.663][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-05-18 16:02:45.665][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:45.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:45.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:45.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:45.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:45.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:45.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:45.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:45.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:45.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:45.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:45.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:45.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.716][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:45.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:45.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.719][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:45.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:45.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:45.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:45.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:45.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:45.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.729][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.736][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:45.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:45.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.739][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:45.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:45.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.756][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:45.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:45.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.759][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:45.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:45.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.763][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.769][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.773][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.776][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.780][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.783][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:45.784][private$selectFields]
biodb.TRACE[2024-05-18 16:02:45.784][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:45.785][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:45.786][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:45.787][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:45.788][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:45.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.789][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.790][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.791][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.793][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.793][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.794][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.796][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.797][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.798][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.799][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.800][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.801][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.802][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.803][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.804][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.806][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.807][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:45.807][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:45.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.809][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.810][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:45.811][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:45.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.812][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.813][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.814][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.816][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.816][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:45.817][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:45.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.819][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.820][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.820][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.822][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.823][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.824][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.825][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.826][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:45.827][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:45.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.829][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.830][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.830][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.832][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.833][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.834][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.835][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.836][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.837][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.838][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.839][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:45.840][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:45.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.842][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.843][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.843][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.845][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.846][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.847][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.848][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.849][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.850][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.851][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.852][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.853][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.855][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.855][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.856][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.858][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.859][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:45.859][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:45.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.861][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.862][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:45.863][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:45.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.864][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.865][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.866][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.867][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.868][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:45.869][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:45.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.871][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.871][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.872][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.874][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.875][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.875][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.877][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.878][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:45.879][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:45.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.880][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.881][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.882][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.883][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.884][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.885][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.887][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.887][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.888][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.890][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.891][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:45.891][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:45.892][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:45.893][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:45.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.895][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.896][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.896][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.900][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.901][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.902][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.904][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.904][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.911][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.914][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.915][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.916][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.918][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.918][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.919][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:45.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.921][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.922][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:45.922][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:45.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.924][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.925][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:45.926][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:45.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.927][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.928][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.929][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:45.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.931][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.931][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:45.932][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:45.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.934][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.935][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.935][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:45.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.937][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.938][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.939][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:45.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.940][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.941][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:45.942][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:45.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.943][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.944][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.945][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:45.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.947][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.948][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.948][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:45.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.950][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.951][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.952][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:45.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.953][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.954][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:02:45.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:45.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:45.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:45.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:45.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:45.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:45.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.965][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:45.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.979][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:45.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:45.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:45.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:45.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:45.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.016][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:46.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:46.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.019][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:46.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:46.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.022][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:46.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:46.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.025][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:46.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:46.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:46.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:46.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:46.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:46.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.045][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:46.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:46.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.048][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:46.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:46.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.052][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:46.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:46.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.075][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:46.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:46.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.078][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:46.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:46.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.081][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:46.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:46.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.085][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.095][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.098][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.101][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.105][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.108][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.111][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.121][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171378033, (2R)-2-(diaminoamino)-5-guanidino-pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-[bis(azanyl)amino]-5-[bis(azanyl)methylideneamino]pentanoic acid, ...].
biodb.DEBUG[2024-05-18 16:02:46.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:46.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:46.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:46.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:46.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:46.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:46.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:46.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:46.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:46.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:46.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:46.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.170][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:46.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:46.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.173][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:46.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:46.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:46.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:46.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:46.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:46.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.196][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:46.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:46.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.199][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:46.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:46.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.216][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:46.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:46.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.219][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:46.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:46.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.222][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.226][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.232][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.239][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.242][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:46.243][private$selectFields]
biodb.TRACE[2024-05-18 16:02:46.244][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:46.245][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:46.245][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:46.246][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:46.247][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:46.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.249][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.249][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.250][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.252][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.253][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.253][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.255][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.256][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.257][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.258][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.259][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.260][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.262][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.262][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.263][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.265][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.265][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:46.266][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:46.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.268][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.268][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:46.269][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:46.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.271][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.272][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.273][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.274][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.275][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:46.276][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:46.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.277][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.278][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.279][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.281][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.281][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.282][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.284][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.284][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:46.285][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:46.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.287][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.288][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.288][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.290][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.291][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.291][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.293][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.294][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.295][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.296][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.297][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:46.298][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:46.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.299][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.300][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.301][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.302][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.303][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.304][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.306][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.306][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.307][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.309][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.310][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.311][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.312][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.313][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.314][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.315][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.316][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:46.317][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:46.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.319][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.320][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:46.320][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:46.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.322][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.323][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.324][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.325][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.326][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:46.327][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:46.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.328][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.329][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.330][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.332][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.332][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.333][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.335][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.336][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:46.336][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:46.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.338][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.339][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.340][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.341][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.342][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.343][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.344][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.345][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.346][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.348][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.348][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:46.349][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:46.350][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:46.351][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:46.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.352][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.353][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.354][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.355][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.356][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.357][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.359][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.359][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.360][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.362][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.363][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.363][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.365][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.366][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.367][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.368][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.369][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:46.370][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:46.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.372][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.372][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:46.373][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:46.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.375][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.376][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.377][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.378][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.379][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:46.380][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:46.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.381][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.382][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.383][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.384][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.385][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.386][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.387][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.388][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:46.389][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:46.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.391][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.391][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.392][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.394][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.395][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.395][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.397][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.398][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.399][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.400][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.401][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:02:46.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:46.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:46.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:46.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:46.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:46.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:46.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.469][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:46.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:46.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.472][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:46.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:46.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.476][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:46.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:46.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:46.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:46.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.483][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:46.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:46.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:46.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:46.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.499][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:46.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:46.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.502][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:46.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:46.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.506][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:46.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:46.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:46.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:46.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.531][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:46.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:46.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.535][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:46.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:46.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.545][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.548][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.551][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.558][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.564][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.574][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171372625, tert-butyl 3-amino-2-fluoro-pyrrolidine-1-carboxylate, 3-amino-2-fluoro-1-pyrrolidinecarboxylic acid tert-butyl ester, tert-butyl 3-amino-2-fluoropyrrolidine-1-carboxylate, tert-butyl 3-azanyl-2-fluoranyl-pyrrolidine-1-carboxylate, ...].
biodb.DEBUG[2024-05-18 16:02:46.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:46.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:46.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:46.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:46.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:46.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:46.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:46.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:46.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:46.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:46.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:46.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.622][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:46.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:46.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.625][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:46.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:46.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:46.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:46.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:46.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:46.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.634][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.640][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:46.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:46.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.643][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:46.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:46.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:46.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:46.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.662][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:46.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:46.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.665][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.668][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.671][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.677][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.683][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:46.683][private$selectFields]
biodb.TRACE[2024-05-18 16:02:46.684][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:46.685][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:46.686][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:46.686][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:46.687][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:46.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.688][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.689][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.690][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.691][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.692][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.693][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.694][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.695][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.696][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.697][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.698][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.699][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.700][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.701][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.702][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.703][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.704][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:46.705][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:46.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.706][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.707][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:46.708][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:46.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.715][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.716][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.717][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.719][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.720][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:46.721][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:46.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.722][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.723][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.724][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.725][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.726][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.727][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.728][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.729][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:46.730][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:46.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.731][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.732][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.733][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.734][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.735][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.736][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.737][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.738][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.739][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.740][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.741][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:46.742][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:46.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.743][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.744][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.745][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.746][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.747][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.748][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.749][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.750][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.751][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.752][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.753][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.754][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.755][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.756][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.757][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.758][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.759][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:46.760][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:46.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.761][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.762][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:46.763][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:46.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.764][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.765][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.766][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.767][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.768][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:46.769][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:46.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.770][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.771][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.772][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.773][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.774][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.775][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.776][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.777][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:46.778][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:46.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.779][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.780][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.781][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.782][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.783][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.784][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.786][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.787][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.787][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.789][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.789][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:46.790][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:46.791][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:46.792][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:46.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.793][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.794][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.795][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.797][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.797][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.798][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.800][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.801][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.801][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.803][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.803][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.804][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.806][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.806][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.807][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.808][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.809][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:46.810][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:46.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.812][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.812][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:46.813][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:46.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.814][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.815][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.816][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.817][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.818][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:46.819][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:46.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.820][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.821][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.822][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.823][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.824][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.825][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.826][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.827][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:46.828][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:46.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.829][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.830][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.831][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.832][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.833][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.833][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.835][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.836][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.836][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.838][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.839][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:02:46.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:46.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:46.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:46.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:46.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:46.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:46.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:46.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:46.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:46.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:46.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:46.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.894][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:46.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:46.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.897][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:46.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:46.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.901][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:46.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:46.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:46.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:46.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:46.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:46.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:46.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:46.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.916][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:46.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.922][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:46.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:46.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.925][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:46.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:46.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.929][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:46.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:46.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:46.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:46.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:46.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:46.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.955][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:46.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:46.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.958][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:46.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:46.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.972][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:46.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.979][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.982][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:46.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.988][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.992][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:46.995][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:46.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:46.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.005][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171372572, 5-(3-ethylphenyl)pent-4-enoic acid, 5-(3-ethylphenyl)-4-pentenoic acid, 5-(3-ethylphenyl)pent-4-enoic acid, 5-(3-ethylphenyl)pent-4-enoic acid, ...].
biodb.DEBUG[2024-05-18 16:02:47.006][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:47.007][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:47.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:47.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:47.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:47.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:47.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:47.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:47.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:47.024][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:47.027][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:47.028][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-05-18 16:02:47.029][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:47.030][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-05-18 16:02:47.031][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:47.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:47.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:47.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:47.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:47.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:47.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:47.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:47.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:47.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:47.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:47.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:47.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.080][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:47.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:47.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.083][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:47.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:47.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:47.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:47.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:47.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:47.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.099][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:47.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:47.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.102][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:47.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:47.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.119][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:47.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:47.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.122][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:47.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:47.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.130][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.133][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.136][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.139][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.142][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:47.142][private$selectFields]
biodb.TRACE[2024-05-18 16:02:47.143][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:47.144][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:47.145][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:47.146][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:47.146][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:47.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.148][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.149][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.150][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.151][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.152][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.153][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.154][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.155][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.156][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.158][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.158][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.159][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.161][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.162][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.162][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.164][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.165][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:47.166][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:47.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.167][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.168][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:47.169][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:47.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.170][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.171][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.172][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.173][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.174][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:47.175][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:47.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.176][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.177][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.178][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.179][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.180][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.180][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.182][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.183][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:47.183][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:47.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.185][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.186][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.187][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.188][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.189][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.189][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.191][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.192][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.192][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.194][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.195][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:47.195][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:47.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.197][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.197][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.198][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.200][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.200][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.201][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.202][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.203][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.204][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.205][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.206][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.207][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.208][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.209][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.210][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.211][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.212][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:47.213][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:47.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.214][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.215][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:47.215][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:47.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.217][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.218][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.218][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.220][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.220][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:47.221][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:47.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.222][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.223][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.224][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.234][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.235][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.236][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.238][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.239][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:47.240][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:47.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.242][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.242][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.243][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.245][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.246][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.247][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.248][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.249][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.249][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.251][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.252][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-05-18 16:02:47.253][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-05-18 16:02:47.254][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:47.254][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:47.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.256][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.256][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.257][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.259][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.259][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.260][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.262][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.262][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.263][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.265][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.266][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.267][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.268][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.269][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.270][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.272][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.272][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:47.273][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:47.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.275][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.276][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:47.277][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:47.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.278][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.279][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.279][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.281][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.282][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.283][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.284][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.285][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.286][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.287][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.288][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:47.289][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:47.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.290][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.291][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.292][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.294][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.295][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.295][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.297][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.298][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.298][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.300][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.301][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:02:47.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:47.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:47.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:47.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:47.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:47.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:47.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.338][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.360][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:47.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:47.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.363][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:47.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:47.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.366][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:47.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:47.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.370][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:47.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:47.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:47.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:47.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:47.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:47.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.410][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:47.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:47.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.413][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:47.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:47.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.416][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:47.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:47.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.430][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.433][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.436][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.440][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.443][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.446][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.455][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171374155, potassium;(2,4-dimethylphenyl)methyl-trifluoro-boranuide, potassium;(2,4-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,4-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,4-dimethylphenyl)methyl-tris(fluoranyl)boranuide, ...].
biodb.DEBUG[2024-05-18 16:02:47.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:47.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:47.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:47.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:47.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:47.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:47.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:47.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:47.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:47.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:47.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:47.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.514][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:47.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:47.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.517][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:47.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:47.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:47.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:47.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:47.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:47.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.534][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:47.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:47.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.537][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:47.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:47.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.554][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:47.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:47.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.558][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:47.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:47.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.561][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.567][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.571][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.577][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.580][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:47.580][private$selectFields]
biodb.TRACE[2024-05-18 16:02:47.581][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:47.582][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:47.583][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:47.584][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:47.585][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:47.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.586][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.587][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.588][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.589][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.590][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.591][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.592][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.593][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.594][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.595][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.596][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.597][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.598][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.599][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.600][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.601][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.602][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:47.603][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:47.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.604][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.605][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:47.606][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:47.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.608][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.608][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.609][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.611][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.611][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:47.612][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:47.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.614][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.615][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.615][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.617][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.618][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.619][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.620][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.621][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:47.622][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:47.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.623][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.624][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.625][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.627][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.628][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.629][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.630][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.631][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.632][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.633][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.634][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:47.635][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:47.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.637][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.638][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.638][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.640][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.641][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.642][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.643][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.644][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.645][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.647][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.647][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.648][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.650][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.651][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.651][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.653][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.654][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:47.655][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:47.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.656][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.657][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:47.658][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:47.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.659][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.660][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.661][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.663][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.663][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:47.664][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:47.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.666][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.667][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.668][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.669][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.670][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.671][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.672][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.673][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:47.674][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:47.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.675][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.676][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.677][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.678][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.679][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.680][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.681][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.682][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.683][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.685][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.685][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-05-18 16:02:47.686][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-05-18 16:02:47.687][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:47.688][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:47.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.689][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.690][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.691][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.693][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.693][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.694][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.696][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.696][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.697][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.699][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.700][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.700][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.702][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.703][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.703][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.705][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.706][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:47.706][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:47.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.708][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.709][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:47.709][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:47.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.711][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.712][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.713][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.714][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.715][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.716][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.717][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.718][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.719][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.720][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.721][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:47.722][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:47.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.724][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.724][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.725][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.727][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.728][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.728][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.730][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.731][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.732][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.733][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.734][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:02:47.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:47.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:47.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:47.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:47.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:47.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:47.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.781][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.784][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.796][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.800][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:47.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:47.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.803][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:47.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:47.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.806][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:47.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:47.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:47.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:47.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:47.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:47.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:47.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:47.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.849][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:47.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:47.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.852][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:47.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:47.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.855][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:47.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:47.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.867][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.871][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.874][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.877][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.880][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.883][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:47.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.892][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171374057, potassium;(2,3-dimethylphenyl)methyl-trifluoro-boranuide, potassium;(2,3-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,3-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,3-dimethylphenyl)methyl-tris(fluoranyl)boranuide, ...].
biodb.DEBUG[2024-05-18 16:02:47.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:47.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:47.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:47.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:47.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:47.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:47.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:47.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:47.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:47.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:47.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:47.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:47.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:47.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:47.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:47.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:47.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.941][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:47.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:47.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.944][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:47.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:47.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:47.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:47.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:47.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:47.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:47.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.960][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:47.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:47.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.963][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:47.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:47.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:47.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:47.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.980][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:47.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:47.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.983][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:47.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:47.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:47.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.993][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.996][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:47.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:47.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:47.999][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.003][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.006][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:48.007][private$selectFields]
biodb.TRACE[2024-05-18 16:02:48.008][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:48.009][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:48.009][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:48.010][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:48.011][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:48.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.013][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.013][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.014][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.016][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.016][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.017][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.019][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.019][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.020][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.022][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.023][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.023][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.025][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.026][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.027][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.028][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.029][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:48.030][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:48.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.031][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.032][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:48.033][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:48.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.041][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.042][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.043][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.045][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.046][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:48.047][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:48.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.048][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.049][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.050][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.051][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.052][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.053][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.055][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.055][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:48.056][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:48.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.058][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.059][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.060][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.061][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.062][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.063][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.064][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.065][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.066][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.068][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.068][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:48.069][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:48.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.071][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.072][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.073][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.074][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.075][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.076][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.077][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.078][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.079][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.080][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.081][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.082][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.084][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.084][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.085][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.087][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.088][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:48.088][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:48.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.090][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.091][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:48.092][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:48.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.093][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.094][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.095][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.097][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.097][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:48.098][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:48.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.100][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.100][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.101][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.103][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.103][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.104][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.106][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.106][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:48.107][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:48.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.109][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.110][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.110][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.112][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.113][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.113][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.115][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.115][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.116][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.118][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.118][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:48.119][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:48.120][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:48.121][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:48.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.122][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.123][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.124][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.125][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.126][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.127][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.129][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.129][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.130][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.132][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.133][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.134][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.135][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.136][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.137][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.139][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.139][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:48.140][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:48.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.142][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.143][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:48.144][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:48.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.145][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.146][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.147][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.148][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.149][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:48.150][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:48.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.152][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.152][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.153][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.155][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.156][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.157][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.158][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.159][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:48.160][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:48.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.162][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.163][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.164][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.166][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.166][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.167][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.169][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.170][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.171][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.172][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.173][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:02:48.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:48.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:48.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:48.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:48.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:48.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:48.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.229][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:48.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:48.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.233][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:48.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:48.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.236][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:48.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:48.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.240][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:48.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:48.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:48.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:48.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:48.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:48.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.259][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:48.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:48.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.262][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:48.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:48.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.266][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:48.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:48.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.288][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:48.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:48.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.292][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:48.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:48.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.295][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:48.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:48.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.315][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.319][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.322][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.326][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.329][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.332][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.342][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171369134, (E)-7-(1,3-benzodioxol-5-yl)hept-4-en-2,6-diyn-1-ol, (E)-7-(1,3-benzodioxol-5-yl)-1-hept-4-en-2,6-diynol, (E)-7-(1,3-benzodioxol-5-yl)hept-4-en-2,6-diyn-1-ol, (E)-7-(1,3-benzodioxol-5-yl)hept-4-en-2,6-diyn-1-ol, ...].
biodb.DEBUG[2024-05-18 16:02:48.342][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:48.343][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:48.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:48.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:48.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:48.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:48.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:48.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:48.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:48.364][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:48.367][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:48.368][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-05-18 16:02:48.369][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:48.370][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-05-18 16:02:48.372][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:48.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:48.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:48.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:48.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:48.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:48.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:48.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:48.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:48.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:48.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:48.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:48.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.419][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:48.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:48.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.422][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:48.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:48.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:48.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:48.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.429][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:48.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:48.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.438][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:48.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:48.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.442][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:48.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:48.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.458][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:48.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:48.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.461][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:48.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:48.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.464][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.471][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.474][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.477][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.480][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.483][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:48.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:48.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.486][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:48.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:48.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.489][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:48.490][private$selectFields]
biodb.TRACE[2024-05-18 16:02:48.491][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:48.492][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:48.492][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:48.493][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:48.494][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:48.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.496][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.496][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.497][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.499][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.500][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.500][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.502][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.503][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.504][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.505][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.506][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.507][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.508][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.509][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.510][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.511][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.512][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:48.513][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:48.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.514][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.515][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:48.516][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:48.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.517][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.518][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.519][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.520][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.521][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:48.522][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:48.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.523][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.524][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.525][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.527][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.528][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.528][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.530][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.531][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:48.532][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:48.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.533][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.534][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.535][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.536][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.537][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.538][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.540][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.540][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.541][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.543][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.543][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:48.544][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:48.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.545][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.546][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:48.547][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:48.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.548][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.549][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.550][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.552][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.552][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.553][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.555][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.556][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.556][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.558][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.559][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.560][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.561][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.562][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.563][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.564][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.565][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:48.566][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:48.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.574][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.575][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:48.576][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:48.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.578][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.579][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.580][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.582][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.583][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:48.583][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:48.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.585][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.586][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.587][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.588][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.589][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.590][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.591][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.592][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:48.593][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:48.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.594][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.595][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.596][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.597][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.598][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.599][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.600][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.601][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.602][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.604][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.604][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:48.605][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:48.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.607][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.608][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:48.608][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:48.609][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:48.610][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:48.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.612][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.612][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.613][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.615][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.616][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.617][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.618][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.619][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.620][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.621][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.622][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.623][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.625][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.625][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.626][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.628][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.628][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:48.629][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:48.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.631][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.632][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:48.633][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:48.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.634][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.635][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.636][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.637][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.638][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:48.639][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:48.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.640][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.641][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.642][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.644][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.644][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.645][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.647][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.648][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:48.649][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:48.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.650][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.651][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.652][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.653][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.654][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.655][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.656][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.657][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.657][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.659][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.660][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:02:48.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:48.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:48.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:48.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:48.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:48.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:48.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.717][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:48.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:48.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.720][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:48.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:48.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.723][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:48.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:48.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:48.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:48.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.729][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:48.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:48.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:48.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:48.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.744][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:48.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:48.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.747][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:48.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:48.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.750][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:48.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:48.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.774][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:48.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:48.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.777][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:48.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:48.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:48.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:48.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.787][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.794][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.797][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.800][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.804][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.807][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.810][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.820][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171378033, (2R)-2-(diaminoamino)-5-guanidino-pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-[bis(azanyl)amino]-5-[bis(azanyl)methylideneamino]pentanoic acid, ...].
biodb.DEBUG[2024-05-18 16:02:48.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:48.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:48.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:48.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:48.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:48.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:48.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:48.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:48.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:48.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:48.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:48.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.877][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:48.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:48.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.880][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:48.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:48.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:48.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:48.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:48.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:48.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.896][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:48.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:48.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.899][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:48.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:48.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.916][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:48.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:48.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.919][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:48.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:48.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.925][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.929][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.932][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.935][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.941][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:48.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:48.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.944][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:48.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:48.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.947][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:48.948][private$selectFields]
biodb.TRACE[2024-05-18 16:02:48.949][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:48.949][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:48.950][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:48.951][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:48.952][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:48.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.953][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.954][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.955][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:48.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.957][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.957][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.958][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:48.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.960][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.961][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.961][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:48.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.963][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.964][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.965][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:48.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.966][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.967][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.968][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:48.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.969][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.970][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:48.971][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:48.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.972][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.973][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:48.974][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:48.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.976][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.976][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.977][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:48.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.979][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.980][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:48.980][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:48.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.982][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.983][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.984][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:48.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.985][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.986][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.987][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:48.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.988][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.989][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:48.990][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:48.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.991][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.992][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.993][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:48.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.994][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.995][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.996][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:48.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:48.998][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:48.998][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:48.999][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.001][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.002][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:49.002][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:49.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.004][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.005][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:49.006][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:49.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.007][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.008][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.009][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.011][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.011][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.012][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.014][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.015][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.015][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.017][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.018][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.019][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.020][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.021][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.022][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.024][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.024][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:49.025][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:49.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.027][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.028][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:49.029][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:49.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.030][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.031][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.032][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.033][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.034][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:49.035][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:49.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.037][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.037][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.038][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.040][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.041][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.041][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.043][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.044][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:49.045][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:49.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.046][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.047][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.048][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.050][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.050][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.051][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.053][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.053][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.054][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.056][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.057][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:49.058][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:49.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.059][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.060][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:49.061][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:49.062][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:49.063][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:49.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.064][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.065][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.066][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.067][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.068][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.069][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.070][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.071][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.072][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.074][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.074][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.075][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.077][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.078][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.078][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.080][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.081][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:49.082][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:49.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.083][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.084][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:49.085][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:49.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.086][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.087][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.088][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.090][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.090][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:49.091][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:49.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.093][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.093][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.094][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.096][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.097][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.098][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.106][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.107][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:49.108][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:49.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.110][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.111][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.112][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.114][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.114][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.115][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.117][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.118][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.119][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.120][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.121][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:02:49.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:49.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:49.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:49.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:49.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:49.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:49.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.182][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:49.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:49.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.185][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:49.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:49.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.188][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:49.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:49.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:49.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:49.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:49.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:49.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:49.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:49.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.211][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:49.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:49.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.214][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:49.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:49.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.217][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:49.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:49.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.241][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:49.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:49.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.244][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:49.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:49.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:49.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:49.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.251][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.260][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.264][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.267][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.270][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.273][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.276][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.286][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171372625, tert-butyl 3-amino-2-fluoro-pyrrolidine-1-carboxylate, 3-amino-2-fluoro-1-pyrrolidinecarboxylic acid tert-butyl ester, tert-butyl 3-amino-2-fluoropyrrolidine-1-carboxylate, tert-butyl 3-azanyl-2-fluoranyl-pyrrolidine-1-carboxylate, ...].
biodb.DEBUG[2024-05-18 16:02:49.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:49.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:49.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:49.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:49.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:49.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:49.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:49.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:49.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:49.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:49.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:49.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.312][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.332][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.335][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:49.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:49.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.338][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:49.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:49.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:49.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:49.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:49.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:49.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.355][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:49.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:49.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.358][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:49.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:49.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.382][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:49.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:49.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:49.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:49.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.395][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.399][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.402][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.409][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:49.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:49.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.412][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:49.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:49.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.416][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:49.416][private$selectFields]
biodb.TRACE[2024-05-18 16:02:49.417][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:49.418][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:49.419][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:49.420][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:49.421][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:49.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.422][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.423][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.424][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.425][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.426][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.427][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.428][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.429][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.430][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.431][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.432][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.433][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.434][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.435][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.436][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.438][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.438][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:49.439][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:49.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.441][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.441][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:49.442][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:49.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.444][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.445][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.446][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.447][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.448][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:49.449][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:49.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.450][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.451][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.452][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.454][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.455][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.455][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.457][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.458][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:49.459][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:49.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.460][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.461][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.462][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.463][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.464][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.465][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.466][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.467][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.468][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.470][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.470][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:49.471][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:49.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.473][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.474][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:49.474][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:49.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.476][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.477][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.477][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.479][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.480][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.480][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.482][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.483][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.484][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.485][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.486][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.487][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.488][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.489][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.490][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.491][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.492][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:49.493][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:49.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.494][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.495][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:49.496][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:49.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.497][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.498][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.499][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.500][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.501][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:49.502][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:49.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.503][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.504][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.505][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.507][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.507][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.508][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.510][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.510][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:49.511][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:49.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.513][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.513][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.514][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.516][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.517][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.517][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.519][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.520][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.520][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.522][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.523][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:49.524][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:49.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.525][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.526][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:49.527][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:49.527][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:49.528][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:49.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.530][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.530][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.531][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.533][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.533][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.534][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.536][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.536][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.537][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.539][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.539][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.540][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.542][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.542][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.543][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.545][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.545][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:49.546][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:49.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.548][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.548][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:49.549][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:49.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.551][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.552][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.552][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.554][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.555][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:49.555][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:49.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.557][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.558][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.558][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.560][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.561][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.562][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.563][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.564][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:49.564][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:49.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.566][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.567][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.567][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.569][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.570][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.570][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.572][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.573][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.573][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.575][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.576][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:02:49.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:49.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:49.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:49.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:49.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:49.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:49.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.640][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:49.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:49.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.644][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:49.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:49.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.647][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:49.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:49.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:49.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:49.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:49.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:49.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.656][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:49.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:49.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.670][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:49.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:49.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.674][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:49.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:49.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.677][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:49.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:49.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.700][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:49.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:49.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.704][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:49.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:49.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.707][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:49.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:49.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.720][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.723][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.727][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.730][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.733][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.736][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.746][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171372572, 5-(3-ethylphenyl)pent-4-enoic acid, 5-(3-ethylphenyl)-4-pentenoic acid, 5-(3-ethylphenyl)pent-4-enoic acid, 5-(3-ethylphenyl)pent-4-enoic acid, ...].
biodb.DEBUG[2024-05-18 16:02:49.747][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:49.747][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:02:49.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:49.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:49.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:49.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:49.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:49.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:49.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:49.764][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:02:49.767][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:02:49.768][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-05-18 16:02:49.769][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:49.770][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-05-18 16:02:49.771][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:02:49.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:49.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:49.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:49.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:49.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:49.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:49.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:49.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:49.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:49.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:49.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:49.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.820][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:49.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:49.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.823][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:49.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:49.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:49.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:49.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:49.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:49.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.839][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:49.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:49.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.842][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:49.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:49.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.858][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:49.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:49.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.862][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:49.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:49.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.865][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.869][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.872][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.875][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.878][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.882][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.885][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:49.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:49.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.888][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:49.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:49.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.892][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:49.892][private$selectFields]
biodb.TRACE[2024-05-18 16:02:49.893][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:49.894][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:49.895][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:49.896][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:49.896][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:49.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.898][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.899][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.900][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.901][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.908][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.909][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.911][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.912][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.913][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.915][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.916][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.917][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.918][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.919][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.920][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.921][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.922][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:49.923][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:49.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.925][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.926][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:49.926][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:49.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.928][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.929][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.930][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.931][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.932][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:49.933][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:49.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.935][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.935][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.936][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.938][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.939][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.940][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.941][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.942][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:49.943][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:49.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.944][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.945][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.946][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:49.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.948][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.949][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.949][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:49.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.951][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.952][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.953][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:49.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.954][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.955][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:49.956][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:49.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.957][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.958][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:49.959][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:49.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.960][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.961][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.962][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:49.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.963][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.964][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.965][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:49.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.967][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.967][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.968][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:49.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.970][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.971][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.971][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:49.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.973][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.974][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.975][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:49.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.976][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.977][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:49.978][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:49.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.979][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.980][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:49.981][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:49.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.983][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.983][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.984][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:49.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.986][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.987][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:49.987][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:49.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.989][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.990][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.990][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:49.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.992][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.993][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.993][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:49.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.995][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.996][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:49.997][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:49.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:49.998][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:49.999][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.000][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.001][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.002][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.003][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.004][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.005][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.006][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.007][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.008][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:50.009][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:50.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.011][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.012][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-05-18 16:02:50.013][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-05-18 16:02:50.014][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:50.014][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:50.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.016][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.017][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.018][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.019][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.020][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.021][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.022][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.023][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.024][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.026][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.027][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.027][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.029][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.030][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.031][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.032][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.033][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:50.034][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:50.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.036][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.036][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:50.037][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:50.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.039][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.040][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.041][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.042][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.043][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.044][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.045][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.046][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.047][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.048][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.049][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:50.050][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:50.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.052][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.052][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.053][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.055][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.055][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.056][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.058][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.059][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.059][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.061][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.062][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:02:50.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:50.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:50.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:50.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:50.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:50.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:50.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.086][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.120][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:50.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:50.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.124][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:50.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:50.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:50.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:50.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:50.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:50.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:50.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:50.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.137][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:50.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:50.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.143][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.147][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.175][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:50.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:50.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.180][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:50.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:50.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.184][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:50.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:50.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.190][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.200][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.203][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.207][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.210][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.213][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.222][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171374155, potassium;(2,4-dimethylphenyl)methyl-trifluoro-boranuide, potassium;(2,4-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,4-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,4-dimethylphenyl)methyl-tris(fluoranyl)boranuide, ...].
biodb.DEBUG[2024-05-18 16:02:50.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:50.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:50.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:50.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:50.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:50.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:50.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:50.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:50.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:50.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:50.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:50.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.252][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.262][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.272][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:50.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:50.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.275][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:50.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:50.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:50.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:50.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.281][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:50.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:50.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.287][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.290][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:50.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:50.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.294][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:50.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:50.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.310][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:50.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:50.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.313][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:50.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:50.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.320][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.323][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.326][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.329][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.333][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.336][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:50.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:50.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.339][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:50.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:50.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.342][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:50.343][private$selectFields]
biodb.TRACE[2024-05-18 16:02:50.343][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:50.344][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:50.345][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:50.346][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:50.347][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:50.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.348][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.349][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.350][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.351][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.352][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.353][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.354][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.355][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.356][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.358][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.358][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.359][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.361][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.362][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.363][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.364][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.365][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:50.366][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:50.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.367][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.368][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:50.369][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:50.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.370][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.371][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.372][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.373][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.374][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:50.375][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:50.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.377][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.378][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.378][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.380][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.381][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.382][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.383][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.384][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:50.385][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:50.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.387][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.387][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.388][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.390][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.391][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.392][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.393][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.394][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.395][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.396][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.397][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:50.398][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:50.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.400][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.401][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:50.402][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:50.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.403][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.404][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.405][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.406][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.407][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.408][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.410][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.411][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.411][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.413][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.414][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.415][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.417][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.418][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.419][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.420][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.421][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:50.422][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:50.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.424][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.425][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:50.425][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:50.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.427][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.428][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.429][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.430][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.431][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:50.432][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:50.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.433][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.434][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.435][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.436][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.437][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.438][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.446][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.447][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:50.448][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:50.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.450][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.451][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.452][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.454][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.454][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.455][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.457][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.457][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.458][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.460][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.461][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:50.461][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:50.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.463][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.464][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-05-18 16:02:50.464][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-05-18 16:02:50.465][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:50.466][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:50.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.468][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.469][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.469][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.471][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.472][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.472][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.474][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.475][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.476][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.477][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.478][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.479][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.480][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.481][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.482][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.483][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.484][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:50.485][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:50.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.486][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.487][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:50.488][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:50.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.489][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.490][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.491][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.492][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.493][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.494][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.495][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.496][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.497][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.499][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.500][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:50.500][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:50.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.502][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.503][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.504][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.505][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.506][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.507][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.508][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.509][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.509][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.511][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.512][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:02:50.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:50.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:50.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:50.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:50.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:50.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:50.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.555][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.569][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.572][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:50.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:50.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.575][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:50.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:50.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.578][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:50.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:50.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:50.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:50.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:50.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:50.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:50.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:50.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.621][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:50.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:50.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.624][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:50.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:50.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.627][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:50.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:50.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.631][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.641][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.644][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.647][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.651][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.654][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.658][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.666][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171374057, potassium;(2,3-dimethylphenyl)methyl-trifluoro-boranuide, potassium;(2,3-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,3-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,3-dimethylphenyl)methyl-tris(fluoranyl)boranuide, ...].
biodb.DEBUG[2024-05-18 16:02:50.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:50.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:50.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:50.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:50.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:50.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:50.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:50.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:50.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:50.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:50.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:50.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.722][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:50.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:50.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.726][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:50.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:50.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.729][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:50.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:50.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:50.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:50.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.739][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.742][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:50.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:50.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.745][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:50.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:50.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.761][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:50.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:50.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.765][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:50.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:50.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.771][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.774][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.777][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.781][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.784][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.787][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:50.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:50.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.790][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:50.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:50.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.794][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:50.794][private$selectFields]
biodb.TRACE[2024-05-18 16:02:50.795][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:02:50.796][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:02:50.797][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:50.798][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:50.798][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:50.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.800][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.801][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.802][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.803][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.804][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.805][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.806][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.807][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.808][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.809][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.810][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.811][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.812][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.813][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.814][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.816][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.816][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:50.817][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:50.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.819][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.819][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:50.820][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:50.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.822][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.822][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.823][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.825][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.826][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:50.827][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:50.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.828][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.829][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.830][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.831][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.832][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.833][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.834][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.835][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:50.836][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:50.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.837][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.838][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.839][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.840][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.841][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.842][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.843][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.844][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.845][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.847][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.847][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:50.848][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:50.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.850][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.850][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:50.851][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:50.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.853][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.853][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.854][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.856][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.857][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.857][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.859][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.860][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.860][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.862][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.863][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.863][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.865][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.866][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.866][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.868][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.869][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:50.870][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:50.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.871][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.872][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:50.873][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:50.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.874][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.875][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.876][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.878][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.878][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:50.879][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:50.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.881][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.881][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.882][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.884][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.885][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.885][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.887][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.888][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:50.889][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:50.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.890][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.891][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.892][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.893][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.894][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.895][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.897][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.897][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.898][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.900][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.901][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:02:50.901][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:02:50.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.903][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.904][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:50.905][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:02:50.906][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:50.907][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:50.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.908][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.909][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.910][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.911][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.912][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.913][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.915][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.915][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.916][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.918][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.919][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.920][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:50.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.921][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.922][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.923][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:50.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.924][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.925][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:50.926][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:50.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.927][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.928][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:50.929][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:50.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.931][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.931][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.932][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:50.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.934][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.934][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:50.935][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:50.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.937][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.937][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.938][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:50.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.940][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.941][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.941][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:50.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.943][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.944][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:50.945][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:50.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.946][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.947][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.947][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:50.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.949][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.950][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.951][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:50.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.952][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.953][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.954][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:50.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.955][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.956][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:02:50.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:50.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:50.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:50.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:50.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:50.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:50.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:02:50.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:02:50.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.994][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:50.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:50.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:50.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.000][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:51.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:02:51.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:51.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:51.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:51.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:51.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:51.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:02:51.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:51.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:51.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:51.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:51.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:51.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:02:51.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.023][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:51.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:51.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.026][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:51.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:51.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.029][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:02:51.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:02:51.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:51.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:51.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:51.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:51.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.039][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:02:51.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:02:51.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:51.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:51.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:51.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:51.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:02:51.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:02:51.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.052][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:51.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:51.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.055][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:51.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:51.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.058][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:02:51.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:02:51.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:51.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:51.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:51.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:51.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:51.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:02:51.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:51.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:51.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:51.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:51.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:51.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:02:51.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.081][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:51.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:51.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.084][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:51.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:51.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.087][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:02:51.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:02:51.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:51.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:51.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.094][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:51.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:51.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:51.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:51.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.100][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:51.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:51.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.103][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:51.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:51.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.107][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:51.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:02:51.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.110][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:51.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:51.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.113][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:51.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:51.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.117][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:51.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:02:51.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.126][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171369134, (E)-7-(1,3-benzodioxol-5-yl)hept-4-en-2,6-diyn-1-ol, (E)-7-(1,3-benzodioxol-5-yl)-1-hept-4-en-2,6-diynol, (E)-7-(1,3-benzodioxol-5-yl)hept-4-en-2,6-diyn-1-ol, (E)-7-(1,3-benzodioxol-5-yl)hept-4-en-2,6-diyn-1-ol, ...].
biodb.DEBUG[2024-05-18 16:02:51.127][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:02:51.128][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-18 16:02:51.134][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-18 16:02:51.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-18 16:02:51.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.137][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-18 16:02:51.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-18 16:02:51.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-18 16:02:51.143][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-18 16:02:51.144][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.comp from the request scheduler
biodb.INFO [2024-05-18 16:02:51.145][self$deleteConn] Connector "ncbi.pubchem.comp" deleted.
biodb.DEBUG[2024-05-18 16:02:51.146][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-18 16:02:51.147][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:51.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:51.148][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.150][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-05-18 16:02:51.154][biodb::testContext]
biodb.INFO [2024-05-18 16:02:51.155][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-18 16:02:51.155][biodb::testContext] Test context - Pubchem Subst long tests
biodb.INFO [2024-05-18 16:02:51.156][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-18 16:02:51.157][biodb::testContext]
biodb.INFO [2024-05-18 16:02:51.158][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-05-18 16:02:51.160][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-05-18 16:02:51.164][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-18 16:02:51.164][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-18 16:02:51.165][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-18 16:02:51.166][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.169][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-18 16:02:51.169][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-18 16:02:51.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.172][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-18 16:02:51.173][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-18 16:02:51.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.176][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-18 16:02:51.177][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-18 16:02:51.178][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-18 16:02:51.179][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.181][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-18 16:02:51.182][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-18 16:02:51.183][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-18 16:02:51.183][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.185][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-18 16:02:51.186][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-18 16:02:51.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.189][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-18 16:02:51.190][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-18 16:02:51.191][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-18 16:02:51.192][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.194][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-18 16:02:51.195][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-18 16:02:51.195][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.198][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-18 16:02:51.198][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-18 16:02:51.199][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-18 16:02:51.200][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.202][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-18 16:02:51.203][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-18 16:02:51.203][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-18 16:02:51.204][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-18 16:02:51.205][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-18 16:02:51.206][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-18 16:02:51.206][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.209][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-18 16:02:51.210][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-18 16:02:51.210][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.213][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-18 16:02:51.213][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-18 16:02:51.214][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.216][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-18 16:02:51.217][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-18 16:02:51.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.220][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-18 16:02:51.221][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-18 16:02:51.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.224][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-18 16:02:51.224][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-18 16:02:51.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.228][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-18 16:02:51.228][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-18 16:02:51.245][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-18 16:02:51.246][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.248][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-18 16:02:51.249][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-18 16:02:51.250][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-18 16:02:51.251][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.260][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-18 16:02:51.262][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:51.276][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-18 16:02:51.278][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.278][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:02:51.279][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.280][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:02:51.281][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:51.282][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:02:51.282][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-18 16:02:51.283][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:02:51.284][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.285][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-18 16:02:51.286][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:02:51.287][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:51.288][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.288][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:02:51.288][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-18 16:02:51.288][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-18 16:02:51.288][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-18 16:02:51.288][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-18 16:02:51.289][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:02:51.290][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:51.291][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:51.292][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:02:51.292][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:51.293][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:51.294][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:02:51.295][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:51.295][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:02:51.296][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:02:51.297][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:51.298][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:51.299][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-18 16:02:51.300][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:51.301][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-18 16:02:51.302][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.303][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:02:51.303][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.304][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:02:51.305][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:51.306][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:02:51.307][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-18 16:02:51.307][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:02:51.308][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.309][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-18 16:02:51.310][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:02:51.311][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:51.311][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.312][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:02:51.312][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-18 16:02:51.312][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-18 16:02:51.312][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-18 16:02:51.312][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-18 16:02:51.313][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:02:51.314][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:51.314][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:51.315][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:02:51.316][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:51.317][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:51.317][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:02:51.318][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:51.319][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:02:51.320][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:02:51.320][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:51.321][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:51.322][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-18 16:02:51.323][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.324][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-18 16:02:51.325][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.326][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:02:51.327][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.328][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:02:51.328][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:51.329][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:02:51.330][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-18 16:02:51.331][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:02:51.332][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:51.333][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-18 16:02:51.333][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:02:51.334][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:51.335][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.336][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:51.336][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:02:51.337][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:51.338][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:51.339][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:02:51.339][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:51.340][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:51.341][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:02:51.342][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:51.343][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:02:51.343][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:02:51.344][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:51.345][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:51.346][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-18 16:02:51.347][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.348][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-18 16:02:51.348][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.349][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:02:51.350][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.351][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:02:51.352][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:51.352][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:02:51.353][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-18 16:02:51.354][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:02:51.355][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:51.356][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-18 16:02:51.356][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:02:51.357][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:51.358][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.359][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:51.359][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:02:51.360][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:51.361][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:51.361][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:02:51.362][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:51.363][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:51.364][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:02:51.364][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:51.365][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:02:51.366][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:02:51.367][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:51.367][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:51.368][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-18 16:02:51.369][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.371][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.374][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.381][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.385][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.391][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.395][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.402][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.409][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.413][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.416][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.420][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.427][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.431][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-18 16:02:51.432][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-18 16:02:51.433][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-18 16:02:51.434][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-18 16:02:51.435][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-18 16:02:51.436][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-18 16:02:51.437][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-18 16:02:51.438][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-18 16:02:51.439][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-18 16:02:51.440][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-18 16:02:51.441][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-18 16:02:51.442][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-18 16:02:51.444][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-18 16:02:51.445][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-18 16:02:51.446][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-18 16:02:51.447][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-18 16:02:51.448][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-18 16:02:51.449][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-18 16:02:51.450][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-18 16:02:51.451][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-18 16:02:51.452][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-18 16:02:51.453][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-18 16:02:51.454][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-18 16:02:51.455][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-18 16:02:51.456][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-18 16:02:51.457][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-18 16:02:51.459][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-18 16:02:51.460][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-18 16:02:51.461][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-18 16:02:51.462][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-18 16:02:51.463][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-18 16:02:51.464][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-18 16:02:51.465][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-18 16:02:51.466][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-18 16:02:51.467][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-18 16:02:51.469][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-18 16:02:51.470][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-18 16:02:51.471][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-18 16:02:51.472][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-18 16:02:51.473][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-18 16:02:51.474][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-18 16:02:51.475][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-18 16:02:51.476][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-18 16:02:51.478][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-18 16:02:51.479][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-18 16:02:51.480][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-18 16:02:51.481][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-18 16:02:51.482][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-18 16:02:51.483][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-18 16:02:51.484][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-18 16:02:51.485][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-18 16:02:51.487][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-18 16:02:51.488][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-18 16:02:51.489][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-18 16:02:51.490][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-18 16:02:51.491][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-18 16:02:51.492][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-18 16:02:51.493][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-18 16:02:51.494][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-18 16:02:51.496][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-18 16:02:51.497][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-18 16:02:51.498][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-18 16:02:51.499][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-18 16:02:51.500][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-18 16:02:51.501][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-18 16:02:51.502][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-18 16:02:51.503][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-18 16:02:51.504][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-18 16:02:51.505][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-18 16:02:51.513][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-18 16:02:51.515][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-18 16:02:51.516][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-18 16:02:51.518][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-18 16:02:51.519][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-18 16:02:51.520][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-18 16:02:51.522][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-18 16:02:51.523][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-18 16:02:51.524][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-18 16:02:51.525][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-18 16:02:51.526][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-18 16:02:51.527][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-18 16:02:51.528][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-18 16:02:51.529][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-18 16:02:51.530][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-18 16:02:51.531][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-05-18 16:02:51.532][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-18 16:02:51.533][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.534][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.536][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:51.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:51.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:51.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:51.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:51.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:51.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:51.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:51.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.556][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:51.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:51.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.561][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:51.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:51.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.566][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:51.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:51.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:51.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:51.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:51.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:51.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:51.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:51.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.586][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:51.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:51.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:51.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:51.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.597][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:51.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:51.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.602][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:51.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:51.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:51.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:51.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.612][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:51.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:51.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.617][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:02:51.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:51.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:51.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:02:51.623][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-05-18 16:02:51.625][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-05-18 16:02:51.626][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.627][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-05-18 16:02:51.628][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.629][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:02:51.630][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.630][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:02:51.631][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.632][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:02:51.633][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-05-18 16:02:51.634][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:02:51.635][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.635][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-05-18 16:02:51.636][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:02:51.637][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-05-18 16:02:51.637][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-05-18 16:02:51.638][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:51.639][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:51.640][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-18 16:02:51.640][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:51.641][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:51.642][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:02:51.643][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:51.643][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:51.644][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:02:51.645][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-18 16:02:51.645][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-05-18 16:02:51.646][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:02:51.647][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:02:51.647][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.648][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:51.649][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-05-18 16:02:51.651][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.652][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-05-18 16:02:51.652][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.653][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:02:51.654][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.655][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:02:51.656][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.656][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:02:51.657][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-18 16:02:51.658][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:02:51.659][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.660][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-05-18 16:02:51.661][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:02:51.662][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-05-18 16:02:51.662][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-05-18 16:02:51.662][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-05-18 16:02:51.662][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-05-18 16:02:51.662][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-05-18 16:02:51.662][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-05-18 16:02:51.663][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:51.663][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:02:51.664][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-18 16:02:51.665][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:51.666][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:51.666][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:02:51.667][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:51.668][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:51.669][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:02:51.670][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:02:51.670][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-18 16:02:51.670][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:02:51.671][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:02:51.672][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.673][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:51.674][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-05-18 16:02:51.675][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:51.676][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-05-18 16:02:51.677][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.678][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:02:51.678][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.679][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:02:51.680][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.681][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:02:51.682][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-18 16:02:51.682][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:02:51.683][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.684][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-05-18 16:02:51.685][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:02:51.686][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-05-18 16:02:51.686][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:02:51.686][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:02:51.686][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:02:51.686][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:02:51.686][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:02:51.686][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:02:51.686][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:02:51.686][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:02:51.686][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:02:51.686][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-05-18 16:02:51.686][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:02:51.686][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:02:51.686][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:02:51.687][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:51.688][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:02:51.688][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-18 16:02:51.688][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-18 16:02:51.688][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-05-18 16:02:51.689][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:51.690][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:51.691][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:02:51.691][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:51.692][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:51.693][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:02:51.694][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:02:51.694][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-18 16:02:51.694][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-05-18 16:02:51.695][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:02:51.695][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:02:51.696][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.697][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-18 16:02:51.698][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-05-18 16:02:51.699][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.700][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-05-18 16:02:51.701][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.701][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:02:51.702][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.703][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:02:51.704][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.705][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:02:51.705][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-18 16:02:51.706][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:02:51.707][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.708][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-05-18 16:02:51.708][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:02:51.709][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-05-18 16:02:51.709][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-05-18 16:02:51.710][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:02:51.711][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:02:51.711][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-05-18 16:02:51.712][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:51.713][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:51.714][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:02:51.714][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:02:51.715][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:02:51.716][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:02:51.717][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:02:51.717][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-18 16:02:51.717][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-05-18 16:02:51.718][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:02:51.718][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:02:51.719][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:02:51.720][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-18 16:02:51.721][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-05-18 16:02:51.722][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-18 16:02:51.723][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-18 16:02:51.725][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-05-18 16:02:51.726][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-18 16:02:51.727][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-05-18 16:02:51.732][super$initialize] Initialize connector ncbi.pubchem.subst.
biodb.DEBUG[2024-05-18 16:02:51.733][super$initialize] Register connector ncbi.pubchem.subst with the request scheduler
biodb.DEBUG[2024-05-18 16:02:51.734][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.subst.
biodb.DEBUG[2024-05-18 16:02:51.735][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-05-18 16:02:51.736][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-05-18 16:02:51.736][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-05-18 16:02:51.737][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-05-18 16:02:51.738][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-05-18 16:02:51.739][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-05-18 16:02:51.740][rule$addConnector] Connector "ncbi.pubchem.subst" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-18 16:02:51.745][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.subst for database class ncbi.pubchem.subst .
biodb.INFO [2024-05-18 16:02:51.748][biodb::testThat]
biodb.INFO [2024-05-18 16:02:51.749][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-05-18 16:02:51.750][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:51.751][biodb::testThat]
biodb.TRACE[2024-05-18 16:02:51.753][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.subst-3-content.xml".
biodb.DEBUG[2024-05-18 16:02:51.754][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:02:51.757][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-05-18 16:02:51.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:51.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:51.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:51.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:51.768][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:51.769][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:51.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.771][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:51.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:51.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.783][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:51.784][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:51.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.786][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.787][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:51.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:51.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:02:51.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:02:51.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:02:51.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:02:51.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:51.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:51.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:02:51.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:02:51.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:51.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:51.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:51.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:51.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:51.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:51.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:51.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:51.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:51.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:51.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:51.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:51.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:51.825][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3.
biodb.TRACE[2024-05-18 16:02:51.826][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:51.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:51.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.830][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:51.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:51.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.833][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:51.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:51.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.836][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:02:51.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:02:51.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.840][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:02:51.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:02:51.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.843][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:02:51.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:02:51.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.846][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:02:51.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:02:51.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:51.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:51.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:02:51.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:02:51.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:51.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:51.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:51.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:51.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:51.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:51.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:51.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:51.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:51.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:51.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:51.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:51.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.884][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:02:51.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:02:51.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:02:51.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:02:51.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.891][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:02:51.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:02:51.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:51.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:51.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:51.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:51.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:51.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:51.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.909][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:51.910][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:51.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.912][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:51.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:51.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:51.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:51.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:51.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:51.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.930][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:51.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:51.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.934][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:51.935][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:51.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.936][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:51.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:51.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.947][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:51.948][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:51.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.950][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.954][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:51.955][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:51.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.956][ef$get] fields variable is a list.
biodb.INFO [2024-05-18 16:02:51.964][biodb::testThat]
biodb.INFO [2024-05-18 16:02:51.965][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-05-18 16:02:51.966][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:51.967][biodb::testThat]
biodb.DEBUG[2024-05-18 16:02:51.968][private$loadEntries] Creating entries from ids [1]: "3".
biodb.DEBUG[2024-05-18 16:02:51.970][conn$getEntryContent] Get PubChem Substance entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-18 16:02:51.972][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3".
biodb.TRACE[2024-05-18 16:02:51.974][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:02:51.976][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75/3.xml".
biodb.DEBUG[2024-05-18 16:02:51.976][conn$getEntryContent] 1 PubChem Substance entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:02:51.977][self$createEntryFromContent] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:02:51.978][self$createEntryFromContent] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-05-18 16:02:51.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:02:51.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:51.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:51.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:51.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:51.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:51.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:02:51.990][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:51.991][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:51.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.992][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:51.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:51.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:51.997][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:51.998][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:51.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:51.999][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:52.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:52.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:02:52.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:52.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:02:52.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:02:52.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:52.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:02:52.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:02:52.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:52.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:52.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:52.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:52.013][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:02:52.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:02:52.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:52.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:52.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:52.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:52.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:52.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:52.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:52.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:52.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:52.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:52.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:52.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:52.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:52.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:52.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:52.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:52.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:02:52.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:02:52.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:02:52.036][self$createEntryFromContent] Accession numbers: 3.
biodb.TRACE[2024-05-18 16:02:52.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-18 16:02:52.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-18 16:02:52.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:52.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:02:52.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:02:52.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:52.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:02:52.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:02:52.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-18 16:02:52.053][biodb::testThat]
biodb.INFO [2024-05-18 16:02:52.054][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-05-18 16:02:52.054][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:52.055][biodb::testThat]
biodb.INFO [2024-05-18 16:02:52.068][biodb::testThat]
biodb.INFO [2024-05-18 16:02:52.069][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-05-18 16:02:52.070][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:52.071][biodb::testThat]
biodb.WARN [2024-05-18 16:02:52.074][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-05-18 16:02:52.077][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-05-18 16:02:52.085][biodb::testThat]
biodb.INFO [2024-05-18 16:02:52.086][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-05-18 16:02:52.087][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:52.087][biodb::testThat]
biodb.TRACE[2024-05-18 16:02:52.096][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:52.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:52.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:52.100][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:52.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:52.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:52.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:52.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:52.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:52.107][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:02:52.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:02:52.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:52.110][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:02:52.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:02:52.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:52.114][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:02:52.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:02:52.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:52.117][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:02:52.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:02:52.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:52.122][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:52.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:52.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:52.125][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:02:52.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:02:52.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:52.128][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:52.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:02:52.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:52.132][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:02:52.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:02:52.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:52.135][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:02:52.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:02:52.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:52.138][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:02:52.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:02:52.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:02:52.141][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:02:52.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:02:52.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:02:52.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-18 16:02:52.149][biodb::testThat]
biodb.INFO [2024-05-18 16:02:52.150][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-05-18 16:02:52.151][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:52.152][biodb::testThat]
biodb.INFO [2024-05-18 16:02:52.159][biodb::testThat]
biodb.INFO [2024-05-18 16:02:52.160][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-05-18 16:02:52.161][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:52.161][biodb::testThat]
biodb.INFO [2024-05-18 16:02:52.169][biodb::testThat]
biodb.INFO [2024-05-18 16:02:52.170][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-05-18 16:02:52.171][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:52.171][biodb::testThat]
biodb.DEBUG[2024-05-18 16:02:52.174][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/substance/3".
biodb.DEBUG[2024-05-18 16:02:52.293][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/substance/3.
biodb.INFO [2024-05-18 16:02:52.405][biodb::testThat]
biodb.INFO [2024-05-18 16:02:52.406][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-05-18 16:02:52.407][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:02:52.407][biodb::testThat]
biodb.DEBUG[2024-05-18 16:02:52.516][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=3&t=l.
biodb.INFO [2024-05-18 16:02:52.599][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-18 16:02:52.600][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.subst from the request scheduler
biodb.INFO [2024-05-18 16:02:52.601][self$deleteConn] Connector "ncbi.pubchem.subst" deleted.
biodb.DEBUG[2024-05-18 16:02:52.602][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-18 16:02:52.602][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:02:52.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:02:52.604][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:02:52.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:02:52.605][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:02:52.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1034 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1034 ]
> 
> proc.time()
   user  system elapsed 
 37.975   1.747  76.787

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.8.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbNcbi/DESCRIPTION’ ... OK
* this is package ‘biodbNcbi’ version ‘1.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbNcbi’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.2Mb
  sub-directories of 1Mb or more:
    testref   7.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... WARNING
'library' or 'require' call not declared from: ‘biodbNci’
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/00check.log’
for details.

Installation output

biodbNcbi.Rcheck/00install.out

* installing *source* package ‘biodbNcbi’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbNcbi)