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This page was generated on 2023-10-20 09:38:06 -0400 (Fri, 20 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson2macOS 12.6.1 Montereyarm644.3.1 (2023-06-16) -- "Beagle Scouts" 4347
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Package 1256/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mitoClone2 1.6.0  (landing page)
Benjamin Story
Snapshot Date: 2023-10-15 14:00:07 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/mitoClone2
git_branch: RELEASE_3_17
git_last_commit: add7e6c
git_last_commit_date: 2023-04-25 11:31:33 -0400 (Tue, 25 Apr 2023)
kjohnson2macOS 12.6.1 Monterey / arm64  ERROR    ERROR  skippedskipped

BUILD results for mitoClone2 on kjohnson2


To the developers/maintainers of the mitoClone2 package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: mitoClone2
Version: 1.6.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data mitoClone2
StartedAt: 2023-10-16 10:22:05 -0400 (Mon, 16 Oct 2023)
EndedAt: 2023-10-16 10:22:33 -0400 (Mon, 16 Oct 2023)
EllapsedTime: 28.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data mitoClone2
###
##############################################################################
##############################################################################


* checking for file ‘mitoClone2/DESCRIPTION’ ... OK
* preparing ‘mitoClone2’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘mitoClone2’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -D_FILE_OFFSET_BITS=64 ../inst/SCITEpkg/*.cpp -o scite
../inst/SCITEpkg/findBestTrees.cpp:100:141: error: reference to 'sample' is ambiguous
        sampleOutput = runMCMCbeta(optimalTrees, errorRates, rep, loops, gamma, moveProbs, n, m, dataMatrix, scoreType, trueParentVec, sampleStep, sample, chi, priorSd, useTreeList, treeType);
                                                                                                                                                   ^
../inst/SCITEpkg/findBestTrees.cpp:61:6: note: candidate found by name lookup is 'sample'
bool sample = false;
     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/algorithm:3227:17: note: candidate found by name lookup is 'std::sample'
_SampleIterator sample(_PopulationIterator __first,
                ^
../inst/SCITEpkg/findBestTrees.cpp:289:5: error: reference to 'sample' is ambiguous
                                sample = true;
                                ^
../inst/SCITEpkg/findBestTrees.cpp:61:6: note: candidate found by name lookup is 'sample'
bool sample = false;
     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/algorithm:3227:17: note: candidate found by name lookup is 'std::sample'
_SampleIterator sample(_PopulationIterator __first,
                ^
2 errors generated.
../inst/SCITEpkg/mcmcBinTreeMove.cpp:75:1: warning: non-void function does not return a value in all control paths [-Wreturn-type]
}
^
1 warning generated.
make: *** [scite] Error 1
ERROR: compilation failed for package ‘mitoClone2’
* removing ‘/private/tmp/RtmpJSR2el/Rinst17f8a2049239b/mitoClone2’
      -----------------------------------
ERROR: package installation failed