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This page was generated on 2023-10-20 09:38:06 -0400 (Fri, 20 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson2macOS 12.6.1 Montereyarm644.3.1 (2023-06-16) -- "Beagle Scouts" 4347
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1236/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MinimumDistance 1.44.0  (landing page)
Robert Scharpf
Snapshot Date: 2023-10-15 14:00:07 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/MinimumDistance
git_branch: RELEASE_3_17
git_last_commit: c329604
git_last_commit_date: 2023-04-25 10:22:56 -0400 (Tue, 25 Apr 2023)
kjohnson2macOS 12.6.1 Monterey / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

BUILD BIN results for MinimumDistance on kjohnson2


To the developers/maintainers of the MinimumDistance package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: MinimumDistance
Version: 1.44.0
Command: rm -rf MinimumDistance.buildbin-libdir && mkdir MinimumDistance.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh MinimumDistance_1.44.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R MinimumDistance.buildbin-libdir
StartedAt: 2023-10-19 14:56:35 -0400 (Thu, 19 Oct 2023)
EndedAt: 2023-10-19 14:58:49 -0400 (Thu, 19 Oct 2023)
EllapsedTime: 134.0 seconds
RetCode: 0
Status:   OK  
PackageFile: MinimumDistance_1.44.0.tgz
PackageFileSize: 3.681 MiB

Command output

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### Running command:
###
###   rm -rf MinimumDistance.buildbin-libdir && mkdir MinimumDistance.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh MinimumDistance_1.44.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R MinimumDistance.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=MinimumDistance.buildbin-libdir MinimumDistance_1.44.0.tar.gz'
>>>>>>> 

* installing *source* package ‘MinimumDistance’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
No methods found in package ‘oligoClasses’ for request: ‘mean’ when loading ‘crlmm’
Warning: replacing previous import ‘ff::pattern’ by ‘grid::pattern’ when loading ‘MinimumDistance’
Creating a new generic function for ‘allNames’ in package ‘MinimumDistance’
in method for ‘coerce’ with signature ‘"RangedDataCNV","GRanges"’: no definition for class “RangedDataCNV”
in method for ‘todf’ with signature ‘object="TrioSet",rangeData="RangedData"’: no definition for class “RangedData”
in method for ‘prune’ with signature ‘object="TrioSet",ranges="RangedDataCNV"’: no definition for class “RangedDataCNV”
in method for ‘prune’ with signature ‘object="TrioSetList",ranges="RangedDataCNV"’: no definition for class “RangedDataCNV”
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package ‘oligoClasses’ for request: ‘mean’ when loading ‘crlmm’
Warning: replacing previous import ‘ff::pattern’ by ‘grid::pattern’ when loading ‘MinimumDistance’
** testing if installed package can be loaded from final location
No methods found in package ‘oligoClasses’ for request: ‘mean’ when loading ‘crlmm’
Warning: replacing previous import ‘ff::pattern’ by ‘grid::pattern’ when loading ‘MinimumDistance’
** testing if installed package keeps a record of temporary installation path
* DONE (MinimumDistance)