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This page was generated on 2023-10-20 09:38:00 -0400 (Fri, 20 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson2macOS 12.6.1 Montereyarm644.3.1 (2023-06-16) -- "Beagle Scouts" 4347
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 395/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CoGAPS 3.20.0  (landing page)
Elana J. Fertig
Snapshot Date: 2023-10-15 14:00:07 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/CoGAPS
git_branch: RELEASE_3_17
git_last_commit: 6861e5b
git_last_commit_date: 2023-07-11 13:53:11 -0400 (Tue, 11 Jul 2023)
kjohnson2macOS 12.6.1 Monterey / arm64  OK    ERROR  skippedskipped

BUILD results for CoGAPS on kjohnson2


To the developers/maintainers of the CoGAPS package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: CoGAPS
Version: 3.20.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CoGAPS
StartedAt: 2023-10-15 23:53:30 -0400 (Sun, 15 Oct 2023)
EndedAt: 2023-10-15 23:59:31 -0400 (Sun, 15 Oct 2023)
EllapsedTime: 361.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CoGAPS
###
##############################################################################
##############################################################################


* checking for file ‘CoGAPS/DESCRIPTION’ ... OK
* preparing ‘CoGAPS’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CoGAPS.Rmd’ using rmarkdown
Data Model: Dense, Normal
Sampler Type: Sequential
Loading Data...Done! (00:00:00)
-- Equilibration Phase --
10000 of 50000, Atoms: 70(A), 30(P), ChiSq: 379, Time: 00:00:00 / 00:00:00
20000 of 50000, Atoms: 81(A), 31(P), ChiSq: 147, Time: 00:00:00 / 00:00:00
30000 of 50000, Atoms: 84(A), 38(P), ChiSq: 95, Time: 00:00:00 / 00:00:00
40000 of 50000, Atoms: 89(A), 34(P), ChiSq: 126, Time: 00:00:01 / 00:00:02
50000 of 50000, Atoms: 83(A), 40(P), ChiSq: 82, Time: 00:00:01 / 00:00:02
-- Sampling Phase --
10000 of 50000, Atoms: 86(A), 37(P), ChiSq: 120, Time: 00:00:02 / 00:00:03
20000 of 50000, Atoms: 86(A), 40(P), ChiSq: 103, Time: 00:00:02 / 00:00:02
30000 of 50000, Atoms: 89(A), 37(P), ChiSq: 108, Time: 00:00:02 / 00:00:02
40000 of 50000, Atoms: 87(A), 37(P), ChiSq: 107, Time: 00:00:03 / 00:00:03
50000 of 50000, Atoms: 86(A), 39(P), ChiSq: 110, Time: 00:00:03 / 00:00:03
trying URL 'https://zenodo.org/record/7709664/files/inputdata.Rds?download=1'
Content type 'application/octet-stream' length 433262849 bytes (413.2 MB)
==
downloaded 18.0 MB


Quitting from lines 235-240 [load single cell data from zenodo] (CoGAPS.Rmd)
Error: processing vignette 'CoGAPS.Rmd' failed with diagnostics:
download from 'https://zenodo.org/record/7709664/files/inputdata.Rds?download=1' failed
--- failed re-building ‘CoGAPS.Rmd’

SUMMARY: processing the following file failed:
  ‘CoGAPS.Rmd’

Error: Vignette re-building failed.
Execution halted