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This page was generated on 2023-10-16 11:37:41 -0400 (Mon, 16 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4379
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4395
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2212/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
wppi 1.8.0  (landing page)
Ana Galhoz
Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/wppi
git_branch: RELEASE_3_17
git_last_commit: 284601d
git_last_commit_date: 2023-04-25 11:28:27 -0400 (Tue, 25 Apr 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.6.4 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson2macOS 12.6.1 Monterey / arm64see weekly results here

BUILD BIN results for wppi on merida1


To the developers/maintainers of the wppi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/wppi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: wppi
Version: 1.8.0
Command: rm -rf wppi.buildbin-libdir && mkdir wppi.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh wppi_1.8.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R wppi.buildbin-libdir
StartedAt: 2023-10-16 10:25:19 -0400 (Mon, 16 Oct 2023)
EndedAt: 2023-10-16 10:25:50 -0400 (Mon, 16 Oct 2023)
EllapsedTime: 31.3 seconds
RetCode: 0
Status:   OK  
PackageFile: wppi_1.8.0.tgz
PackageFileSize: 295.5 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf wppi.buildbin-libdir && mkdir wppi.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh wppi_1.8.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R wppi.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=wppi.buildbin-libdir wppi_1.8.0.tar.gz'
>>>>>>> 

* installing *source* package ‘wppi’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
[2023-10-16 10:25:29] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2023-10-16 10:25:29] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-10-16 10:25:29] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2023-10-16 10:25:29] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2023-10-16 10:25:29] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2023-10-16 10:25:29] [TRACE]   [OmnipathR] Contains 1 files.
[2023-10-16 10:25:29] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2023-10-16 10:25:29] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2023-10-16 10:25:29] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-10-16 10:25:29] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2023-10-16 10:25:29] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2023-10-16 10:25:29] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2023-10-16 10:25:29] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-10-16 10:25:29] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2023-10-16 10:25:29] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-10-16 10:25:29] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2023-10-16 10:25:29] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-10-16 10:25:29] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2023-10-16 10:25:29] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-10-16 10:25:29] [TRACE]   [OmnipathR] Cache locked: FALSE
Note: wrong number of arguments to '/' 
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2023-10-16 10:25:40] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2023-10-16 10:25:40] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-10-16 10:25:40] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2023-10-16 10:25:40] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2023-10-16 10:25:40] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2023-10-16 10:25:40] [TRACE]   [OmnipathR] Contains 1 files.
[2023-10-16 10:25:40] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2023-10-16 10:25:40] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2023-10-16 10:25:40] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-10-16 10:25:40] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2023-10-16 10:25:40] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2023-10-16 10:25:40] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2023-10-16 10:25:40] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-10-16 10:25:40] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2023-10-16 10:25:40] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-10-16 10:25:40] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2023-10-16 10:25:40] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-10-16 10:25:40] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2023-10-16 10:25:40] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-10-16 10:25:40] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2023-10-16 10:25:49] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2023-10-16 10:25:49] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-10-16 10:25:49] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2023-10-16 10:25:49] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2023-10-16 10:25:49] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2023-10-16 10:25:49] [TRACE]   [OmnipathR] Contains 1 files.
[2023-10-16 10:25:49] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2023-10-16 10:25:49] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2023-10-16 10:25:49] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-10-16 10:25:49] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2023-10-16 10:25:49] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2023-10-16 10:25:49] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2023-10-16 10:25:49] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-10-16 10:25:49] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2023-10-16 10:25:49] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-10-16 10:25:49] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2023-10-16 10:25:49] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-10-16 10:25:49] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2023-10-16 10:25:49] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-10-16 10:25:49] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package keeps a record of temporary installation path
* DONE (wppi)