Back to Multiple platform build/check report for BioC 3.17:   simplified   long
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This page was generated on 2023-10-16 11:36:47 -0400 (Mon, 16 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4379
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4395
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2199/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
vsclust 1.2.0  (landing page)
Veit Schwaemmle
Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/vsclust
git_branch: RELEASE_3_17
git_last_commit: 2155137
git_last_commit_date: 2023-04-25 11:40:46 -0400 (Tue, 25 Apr 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  ERROR    OK    ERROR    OK  
merida1macOS 12.6.4 Monterey / x86_64  ERROR    OK    ERROR    OK  
kjohnson2macOS 12.6.1 Monterey / arm64see weekly results here

CHECK results for vsclust on palomino3


To the developers/maintainers of the vsclust package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/vsclust.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: vsclust
Version: 1.2.0
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:vsclust.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings vsclust_1.2.0.tar.gz
StartedAt: 2023-10-16 08:02:21 -0400 (Mon, 16 Oct 2023)
EndedAt: 2023-10-16 08:02:26 -0400 (Mon, 16 Oct 2023)
EllapsedTime: 5.0 seconds
RetCode: 1
Status:   ERROR  
CheckDir: vsclust.Rcheck
Warnings: NA

Command output

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###
### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:vsclust.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings vsclust_1.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.17-bioc/meat/vsclust.Rcheck'
* using R version 4.3.1 (2023-06-16 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 12.2.0
    GNU Fortran (GCC) 12.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'vsclust/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'vsclust' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'vsclust' can be installed ... ERROR
Installation failed.
See 'F:/biocbuild/bbs-3.17-bioc/meat/vsclust.Rcheck/00install.out' for details.
* DONE

Status: 1 ERROR
See
  'F:/biocbuild/bbs-3.17-bioc/meat/vsclust.Rcheck/00check.log'
for details.

Installation output

vsclust.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL vsclust
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'vsclust' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
g++ -std=gnu++17 -shared -s -static-libgcc -o vsclust.dll tmp.def RcppExports.o vsclust_algo.o -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
collect2.exe: error: ld returned 5 exit status
installing to F:/biocbuild/bbs-3.17-bioc/R/library/00LOCK-vsclust/00new/vsclust/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for 'vsclust' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'F:/biocbuild/bbs-3.17-bioc/R/library/00LOCK-vsclust/00new/vsclust/libs/x64/vsclust.dll':
  LoadLibrary failure:  %1 is not a valid Win32 application.

Error: loading failed
Execution halted
ERROR: loading failed
* removing 'F:/biocbuild/bbs-3.17-bioc/R/library/vsclust'

Tests output

Example timings