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This page was generated on 2023-10-16 11:36:39 -0400 (Mon, 16 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4379
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4395
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1917/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sigPathway 1.68.0  (landing page)
Weil Lai
Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/sigPathway
git_branch: RELEASE_3_17
git_last_commit: 9ef9f8f
git_last_commit_date: 2023-04-25 09:43:54 -0400 (Tue, 25 Apr 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  ERROR    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  ERROR    ERROR  skippedskipped
merida1macOS 12.6.4 Monterey / x86_64  ERROR    ERROR  skippedskipped
kjohnson2macOS 12.6.1 Monterey / arm64see weekly results here

BUILD results for sigPathway on palomino3


To the developers/maintainers of the sigPathway package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sigPathway.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: sigPathway
Version: 1.68.0
Command: chmod a+r sigPathway -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data sigPathway
StartedAt: 2023-10-15 22:24:17 -0400 (Sun, 15 Oct 2023)
EndedAt: 2023-10-15 22:24:23 -0400 (Sun, 15 Oct 2023)
EllapsedTime: 6.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r sigPathway -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data sigPathway
###
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* checking for file 'sigPathway/DESCRIPTION' ... OK
* preparing 'sigPathway':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package 'sigPathway' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.2.0'
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c calc_gene_set_internal.c -o calc_gene_set_internal.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c calc_gene_set_stat.c -o calc_gene_set_stat.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c calc_probe_stat.c -o calc_probe_stat.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c calc_weights.c -o calc_weights.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c matrix_fn.c -o matrix_fn.o
In file included from F:/biocbuild/bbs-3.17-bioc/R/include/R.h:78,
                 from sigPathway.h:18,
                 from matrix_fn.c:13:
matrix_fn.c: In function 'matprod':
matrix_fn.c:28:16: error: too few arguments to function 'dgemm_'
   28 |       F77_CALL(dgemm)(transa, transb, &nrx, &ncy, &ncx, &one,
      |                ^~~~~
F:/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro 'F77_CALL'
   77 | # define F77_CALL(x)    x ## _
      |                         ^
F:/biocbuild/bbs-3.17-bioc/R/include/R_ext/BLAS.h:207:10: note: declared here
  207 | F77_NAME(dgemm)(const char *transa, const char *transb, const int *m,
      |          ^~~~~
F:/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro 'F77_CALL'
   77 | # define F77_CALL(x)    x ## _
      |                         ^
F:/biocbuild/bbs-3.17-bioc/R/include/R_ext/BLAS.h:207:1: note: in expansion of macro 'F77_NAME'
  207 | F77_NAME(dgemm)(const char *transa, const char *transb, const int *m,
      | ^~~~~~~~
matrix_fn.c: In function 'eigen':
matrix_fn.c:65:12: error: too few arguments to function 'dsyevr_'
   65 |   F77_CALL(dsyevr)(jobv, range, uplo, &n, rx, &n,
      |            ^~~~~~
F:/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro 'F77_CALL'
   77 | # define F77_CALL(x)    x ## _
      |                         ^
F:/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:1274:10: note: declared here
 1274 | F77_NAME(dsyevr)(const char* jobz, const char* range, const char* uplo,
      |          ^~~~~~
F:/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro 'F77_CALL'
   77 | # define F77_CALL(x)    x ## _
      |                         ^
F:/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:1274:1: note: in expansion of macro 'F77_NAME'
 1274 | F77_NAME(dsyevr)(const char* jobz, const char* range, const char* uplo,
      | ^~~~~~~~
matrix_fn.c:77:12: error: too few arguments to function 'dsyevr_'
   77 |   F77_CALL(dsyevr)(jobv, range, uplo, &n, rx, &n,
      |            ^~~~~~
matrix_fn.c:77:3: note: in expansion of macro 'F77_CALL'
   77 |   F77_CALL(dsyevr)(jobv, range, uplo, &n, rx, &n,
      |   ^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:1274:10: note: declared here
 1274 | F77_NAME(dsyevr)(const char* jobz, const char* range, const char* uplo,
      |          ^~~~~~
F:/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro 'F77_CALL'
   77 | # define F77_CALL(x)    x ## _
      |                         ^
F:/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:1274:1: note: in expansion of macro 'F77_NAME'
 1274 | F77_NAME(dsyevr)(const char* jobz, const char* range, const char* uplo,
      | ^~~~~~~~
make: *** [F:/biocbuild/bbs-3.17-bioc/R/etc/x64/Makeconf:265: matrix_fn.o] Error 1
ERROR: compilation failed for package 'sigPathway'
* removing 'F:/biocbuild/bbs-3.17-bioc/tmpdir/RtmpgTrFtQ/Rinst202813273ca6/sigPathway'
      -----------------------------------
ERROR: package installation failed