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This page was generated on 2023-10-16 11:36:30 -0400 (Mon, 16 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4379
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4395
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1593/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
qckitfastq 1.16.0  (landing page)
August Guang
Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/qckitfastq
git_branch: RELEASE_3_17
git_last_commit: 985d8f5
git_last_commit_date: 2023-04-25 11:08:31 -0400 (Tue, 25 Apr 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.6.4 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson2macOS 12.6.1 Monterey / arm64see weekly results here

BUILD results for qckitfastq on palomino3


To the developers/maintainers of the qckitfastq package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/qckitfastq.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: qckitfastq
Version: 1.16.0
Command: chmod a+r qckitfastq -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data qckitfastq
StartedAt: 2023-10-15 21:32:02 -0400 (Sun, 15 Oct 2023)
EndedAt: 2023-10-15 21:32:58 -0400 (Sun, 15 Oct 2023)
EllapsedTime: 56.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r qckitfastq -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data qckitfastq
###
##############################################################################
##############################################################################


* checking for file 'qckitfastq/DESCRIPTION' ... OK
* preparing 'qckitfastq':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'vignette-qckitfastq.Rmd' using rmarkdown
!!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)!
pdfcrop: major issue: User/administrator updates are out-of-sync.
!!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)!
pdfcrop: major issue: User/administrator updates are out-of-sync.
!!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)!
pdfcrop: major issue: User/administrator updates are out-of-sync.
!!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)!
pdfcrop: major issue: User/administrator updates are out-of-sync.
!!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)!
pdfcrop: major issue: User/administrator updates are out-of-sync.
!!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)!
pdfcrop: major issue: User/administrator updates are out-of-sync.
!!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)!
pdfcrop: major issue: User/administrator updates are out-of-sync.
! LaTeX Error: File `tabu.sty' not found.

! Emergency stop.
<read *> 

! pdflatex: major issue: User/administrator updates are out-of-sync.

Error: processing vignette 'vignette-qckitfastq.Rmd' failed with diagnostics:
LaTeX failed to compile F:/biocbuild/bbs-3.17-bioc/tmpdir/Rtmpa2l7ip/Rbuild33c86c4d37d7/qckitfastq/vignettes/vignette-qckitfastq.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See vignette-qckitfastq.log for more info.
--- failed re-building 'vignette-qckitfastq.Rmd'

SUMMARY: processing the following file failed:
  'vignette-qckitfastq.Rmd'

Error: Vignette re-building failed.
Execution halted