Back to Multiple platform build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-10-16 11:36:58 -0400 (Mon, 16 Oct 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 496/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
David Zhang
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
merida1 | macOS 12.6.4 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the dasper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/dasper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: dasper |
Version: 1.10.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data dasper |
StartedAt: 2023-10-15 17:48:04 -0400 (Sun, 15 Oct 2023) |
EndedAt: 2023-10-15 17:51:48 -0400 (Sun, 15 Oct 2023) |
EllapsedTime: 223.6 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data dasper ### ############################################################################## ############################################################################## * checking for file ‘dasper/DESCRIPTION’ ... OK * preparing ‘dasper’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘dasper.Rmd’ using rmarkdown unsorted interval: chr21 26021921 26022042 , falling back to slower matching (doesn't affect BAM processing) For potentially faster BigWig reading performance, please sort your argument to --annotations (BED) file via sort -k1,1 -k2,2n and re-run megadepth. building whole annotation region map done 2 chromosomes for annotated regions read 1 chromosomes for annotated regions read, collapsed total number of annotations in collapsed: 84 Processing /Users/biocbuild/Library/Caches/org.R-project.R/R/BiocFileCache/ef4716b3188c_SRR660824_SRS389722_SRX222703_male_lung.bw Quitting from lines 262-269 [coverage_norm] (dasper.Rmd) Error: processing vignette 'dasper.Rmd' failed with diagnostics: BiocParallel errors 1 remote errors, element index: 1 1 unevaluated and other errors first remote error: Error in vroom_(file, delim = delim %||% col_types$delim, col_names = col_names, : bad value --- failed re-building ‘dasper.Rmd’ SUMMARY: processing the following file failed: ‘dasper.Rmd’ Error: Vignette re-building failed. Execution halted