Back to Multiple platform build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-10-16 11:35:17 -0400 (Mon, 16 Oct 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 475/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
cyanoFilter 1.8.0 (landing page) Oluwafemi Olusoji
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.6.4 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the cyanoFilter package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cyanoFilter.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: cyanoFilter |
Version: 1.8.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings cyanoFilter_1.8.0.tar.gz |
StartedAt: 2023-10-15 20:32:02 -0400 (Sun, 15 Oct 2023) |
EndedAt: 2023-10-15 20:34:17 -0400 (Sun, 15 Oct 2023) |
EllapsedTime: 135.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: cyanoFilter.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings cyanoFilter_1.8.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/cyanoFilter.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0 * running under: Ubuntu 22.04.3 LTS * using session charset: UTF-8 * checking for file ‘cyanoFilter/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘cyanoFilter’ version ‘1.8.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘cyanoFilter’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed gateFunc 8.198 0.384 6.782 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘cyanoFilter.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
cyanoFilter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL cyanoFilter ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘cyanoFilter’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cyanoFilter)
cyanoFilter.Rcheck/cyanoFilter-Ex.timings
name | user | system | elapsed | |
MarginEvents | 2.880 | 0.132 | 3.013 | |
PhytoFilter | 0.524 | 0.024 | 0.549 | |
PhytopFilter | 0.559 | 0.032 | 0.591 | |
accTest | 0.306 | 0.000 | 0.306 | |
accuracy | 0.319 | 0.028 | 0.347 | |
cellmargin | 0.267 | 0.008 | 0.276 | |
clusterExtract | 0.691 | 0.004 | 0.695 | |
clusterExtractp | 0.693 | 0.028 | 0.721 | |
debrisNc | 0.543 | 0.044 | 0.586 | |
fullFlowframe-MarginEvents-method | 0.242 | 0.004 | 0.246 | |
fullFlowframe-PhytopFilter-method | 0.490 | 0.004 | 0.494 | |
fullFlowframe | 0.241 | 0.012 | 0.252 | |
gateFunc | 8.198 | 0.384 | 6.782 | |
ggpairsDens | 2.904 | 0.208 | 3.111 | |
ggplotDens | 0.499 | 0.028 | 0.527 | |
ggplotDens2 | 0.716 | 0.016 | 0.731 | |
goodfcs | 0.048 | 0.004 | 0.053 | |
is.DebrisFilter | 0 | 0 | 0 | |
is.MarginEvents | 0 | 0 | 0 | |
is.PhytopFilter | 0.000 | 0.000 | 0.001 | |
is.flowFrame | 0.000 | 0.001 | 0.000 | |
is.flowSet | 0 | 0 | 0 | |
lnTrans | 0.163 | 0.002 | 0.163 | |
newFlowframe | 0.169 | 0.048 | 0.217 | |
nona | 0.091 | 0.004 | 0.096 | |
noneg | 0.150 | 0.032 | 0.181 | |
oneDgate | 0.182 | 0.039 | 0.222 | |
pairsPlot | 2.021 | 0.096 | 2.117 | |
pigmentGate | 0.233 | 0.055 | 0.289 | |
reducedFlowframe-MarginEvents-method | 0.232 | 0.012 | 0.244 | |
reducedFlowframe | 0.585 | 0.040 | 0.625 | |
retain | 0.015 | 0.000 | 0.015 | |
rowNumbers | 0.177 | 0.044 | 0.222 | |
summaries-DebrisFilter-method | 0.248 | 0.012 | 0.260 | |
summaries-MarginEvents-method | 0.251 | 0.016 | 0.267 | |
summaries-PhytopFilter-method | 0.497 | 0.008 | 0.505 | |
summaries | 0.248 | 0.012 | 0.260 | |