Mauro Castro
| Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023) |
| git_url: https://git.bioconductor.org/packages/RedeR |
| git_branch: RELEASE_3_17 |
| git_last_commit: 9f6ef64 |
| git_last_commit_date: 2023-08-30 20:15:15 -0400 (Wed, 30 Aug 2023) |
| Back to Multiple platform build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-10-16 11:37:26 -0400 (Mon, 16 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1674/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RedeR 2.4.3 (landing page) Mauro Castro
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the RedeR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RedeR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: RedeR |
| Version: 2.4.3 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RedeR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RedeR_2.4.3.tar.gz |
| StartedAt: 2023-10-16 05:54:46 -0400 (Mon, 16 Oct 2023) |
| EndedAt: 2023-10-16 05:56:26 -0400 (Mon, 16 Oct 2023) |
| EllapsedTime: 99.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RedeR.Rcheck |
| Warnings: 0 |
##############################################################################
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RedeR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RedeR_2.4.3.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.17-bioc/meat/RedeR.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.3 (clang-1403.0.22.14.1)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.6.4
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RedeR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RedeR’ version ‘2.4.3’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RedeR’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
data 3.3Mb
java 1.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.17-bioc/meat/RedeR.Rcheck/00check.log’
for details.
RedeR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL RedeR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library’ * installing *source* package ‘RedeR’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RedeR)
RedeR.Rcheck/RedeR-Ex.timings
| name | user | system | elapsed | |
| RedPort-class | 0.010 | 0.001 | 0.012 | |
| RedPort | 0.003 | 0.000 | 0.004 | |
| RedeR.data | 0.616 | 0.033 | 0.830 | |
| addEdgeBetweenContainers | 0.023 | 0.003 | 0.032 | |
| addEdges | 0.016 | 0.002 | 0.021 | |
| addGraph | 0.016 | 0.003 | 0.025 | |
| addLegend | 0.083 | 0.003 | 0.109 | |
| addNodes | 0.016 | 0.002 | 0.020 | |
| addSeries | 0 | 0 | 0 | |
| addSubgraph | 0.001 | 0.000 | 0.000 | |
| addSubgraph.list | 0.000 | 0.000 | 0.001 | |
| att | 0.066 | 0.007 | 0.090 | |
| calld | 0.080 | 0.001 | 0.099 | |
| cea | 0.023 | 0.004 | 0.030 | |
| deSelectEdges | 0.017 | 0.002 | 0.025 | |
| deSelectGraph | 0.019 | 0.002 | 0.026 | |
| deSelectNodes | 0.019 | 0.002 | 0.026 | |
| deleteEdges | 0.018 | 0.002 | 0.024 | |
| deleteNodes | 0.019 | 0.002 | 0.028 | |
| deleteSelectedEdges | 0.017 | 0.002 | 0.024 | |
| deleteSelectedNodes | 0.016 | 0.002 | 0.020 | |
| duplicateGraph | 0.000 | 0.000 | 0.001 | |
| exitd | 0.003 | 0.001 | 0.009 | |
| getContainerComponets | 0.017 | 0.003 | 0.026 | |
| getEdgeIDs | 0.016 | 0.003 | 0.025 | |
| getEdges | 0.016 | 0.002 | 0.021 | |
| getGraph | 0.014 | 0.003 | 0.023 | |
| getNodeIDs | 0.015 | 0.002 | 0.023 | |
| getNodes | 0.015 | 0.003 | 0.020 | |
| getSourceEdgeIDs | 0.015 | 0.002 | 0.021 | |
| getTargetEdgeIDs | 0.016 | 0.003 | 0.024 | |
| gtoy.rm | 0.000 | 0.001 | 0.001 | |
| isRelaxActive | 0.004 | 0.001 | 0.006 | |
| mergeNodes | 0.018 | 0.003 | 0.025 | |
| mergeOutEdges | 0.018 | 0.003 | 0.025 | |
| nestNodes | 0.017 | 0.002 | 0.025 | |
| nesthc | 2.138 | 0.124 | 2.887 | |
| ping | 0.004 | 0.000 | 0.004 | |
| relax | 0.017 | 0.002 | 0.022 | |
| resetd | 0.003 | 0.000 | 0.003 | |
| selectAllEdges | 0.016 | 0.002 | 0.024 | |
| selectAllNodes | 0.017 | 0.002 | 0.024 | |
| selectEdges | 0.020 | 0.002 | 0.033 | |
| selectGraph | 0.019 | 0.002 | 0.024 | |
| selectNodes | 0.018 | 0.002 | 0.024 | |
| setArrowDirection | 0.016 | 0.002 | 0.021 | |
| subg | 0.069 | 0.007 | 0.097 | |
| updateContainerSize | 0.030 | 0.003 | 0.038 | |
| updateCoordXY | 0.018 | 0.002 | 0.029 | |
| updateGraph | 0.018 | 0.001 | 0.024 | |
| version | 0.003 | 0.000 | 0.005 | |