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This page was generated on 2023-10-16 11:36:26 -0400 (Mon, 16 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4379
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4395
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1445/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ORFik 1.20.2  (landing page)
Haakon Tjeldnes
Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/ORFik
git_branch: RELEASE_3_17
git_last_commit: 2536088
git_last_commit_date: 2023-08-09 05:14:15 -0400 (Wed, 09 Aug 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.6.4 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson2macOS 12.6.1 Monterey / arm64see weekly results here

BUILD results for ORFik on palomino3


To the developers/maintainers of the ORFik package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ORFik.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: ORFik
Version: 1.20.2
Command: chmod a+r ORFik -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ORFik
StartedAt: 2023-10-15 21:05:04 -0400 (Sun, 15 Oct 2023)
EndedAt: 2023-10-15 21:12:15 -0400 (Sun, 15 Oct 2023)
EllapsedTime: 431.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r ORFik -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ORFik
###
##############################################################################
##############################################################################


* checking for file 'ORFik/DESCRIPTION' ... OK
* preparing 'ORFik':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'Annotation_Alignment.Rmd' using rmarkdown
--- finished re-building 'Annotation_Alignment.Rmd'

--- re-building 'Importing_Data.Rmd' using rmarkdown

Quitting from lines 152-164 [unnamed-chunk-7] (Importing_Data.Rmd)
Error: processing vignette 'Importing_Data.Rmd' failed with diagnostics:
Could not find genome, check spelling!
--- failed re-building 'Importing_Data.Rmd'

--- re-building 'ORFikExperiment.Rmd' using rmarkdown
--- finished re-building 'ORFikExperiment.Rmd'

--- re-building 'ORFikOverview.Rmd' using rmarkdown
--- finished re-building 'ORFikOverview.Rmd'

--- re-building 'Ribo-seq_pipeline.Rmd' using rmarkdown
--- finished re-building 'Ribo-seq_pipeline.Rmd'

--- re-building 'Working_with_transcripts.Rmd' using rmarkdown

Quitting from lines 29-42 [unnamed-chunk-1] (Working_with_transcripts.Rmd)
Error: processing vignette 'Working_with_transcripts.Rmd' failed with diagnostics:
Could not find genome, check spelling!
--- failed re-building 'Working_with_transcripts.Rmd'

SUMMARY: processing the following files failed:
  'Importing_Data.Rmd' 'Working_with_transcripts.Rmd'

Error: Vignette re-building failed.
Execution halted